This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460974 (42 seq.)
>W131108956
APGP01000069
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
8228
8153
-
Gln
TTG
[ENA]
¡û
>W131218296
ATXO01000006
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
140126
140201
+
Gln
TTG
[ENA]
¡û
>C006901
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1400565
1400640
+
Gln
TTG
[Ensembl]
¡û
>WENV180014228
FPIC01105260
[FPIC] soil metagenome; Soil
479
404
-
Gln
TTG
[ENA]
¢þ
>WENV181226024
OFDK01000001
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
192473
192398
-
Gln
TTG
[ENA]
¢þ
>WENV181285447
OFGS01000484
[OFGS] hot springs metagenome; Water and soil
2008
2083
+
Gln
TTG
[ENA]
¢þ
>WENV181408730
OGCH01010697
[OGCH] hot springs metagenome; hot springs
883
958
+
Gln
TTG
[ENA]
¢þ
>C191131094
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
694005
694080
+
Gln
TTG
-
¡û
>W09104532
AALW01000002
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
69986
69911
-
Gln
TTG
[ENA]
¡û
>W09113809
ABYZ01000003
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
101297
101372
+
Gln
TTG
[ENA]
¡û
>C09100843
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2323945
2323870
-
Gln
TTG
[Ensembl]
¡û
>W1911155348
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2477152
2477077
-
Gln
TTG
[ENA]
¡û
>W1911244027
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1993844
1993919
+
Gln
TTG
[ENA]
¡û
>W1911244088
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2030235
2030160
-
Gln
TTG
[ENA]
¡û
>W1911244129
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2583203
2583128
-
Gln
TTG
[ENA]
¡û
>W1911244165
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
544851
544926
+
Gln
TTG
[ENA]
¡û
>W1911244233
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2493315
2493240
-
Gln
TTG
[ENA]
¡û
>W1911572528
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
455515
455590
+
Gln
TTG
[ENA]
¡û
>W1911572611
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
369804
369729
-
Gln
TTG
[ENA]
¡û
>W1911572623
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
539729
539804
+
Gln
TTG
[ENA]
¡û
>W1810052233
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
11865
11940
+
Gln
TTG
[ENA]
¡û
>W1810071881
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
493848
493923
+
Gln
TTG
[ENA]
¡û
>W1810071930
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1527973
1528048
+
Gln
TTG
[ENA]
¡û
>W1810072013
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
293556
293481
-
Gln
TTG
[ENA]
¡û
>W1810368038
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
156712
156637
-
Gln
TTG
[ENA]
¡û
>C10103659
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2129874
2129799
-
Gln
TTG
[Ensembl]
¡û
>C11105376
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
425287
425362
+
Gln
TTG
[Ensembl]
¡û
>C11105423
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
565522
565597
+
Gln
TTG
[Ensembl]
¡û
>C11105865
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1979925
1979850
-
Gln
TTG
[Ensembl]
¡û
>W11139377
AEKB01000003
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
99502
99427
-
Gln
TTG
[ENA]
¡û
>W11139433
AEKC01000023
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
686
611
-
Gln
TTG
[ENA]
¡û
>W1511563958
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
2579649
2579574
-
Gln
TTG
[ENA]
¡û
>W1511563997
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
997046
996971
-
Gln
TTG
[ENA]
¡û
>W1511564042
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
818593
818668
+
Gln
TTG
[ENA]
¡û
>W1710603731
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
979786
979861
+
Gln
TTG
[ENA]
¡û
>W1710603829
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1477495
1477420
-
Gln
TTG
[ENA]
¡û
>W1710603916
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2430802
2430727
-
Gln
TTG
[ENA]
¡û
>W1710605079
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1489451
1489376
-
Gln
TTG
[ENA]
¡û
>W1710609653
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
898429
898504
+
Gln
TTG
[ENA]
¡û
>W1710609739
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
75207
75132
-
Gln
TTG
[ENA]
¡û
>W1710609760
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2595882
2595807
-
Gln
TTG
[ENA]
¡û
>W1710609806
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2588425
2588350
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK