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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462503 (42 seq.)
>W1711283067
LZOF01000025
Spirochaetota
Brachyspira hampsonii [LZOF]
72252
72180
-
Arg
CCT
[ENA]
¡û
>W1711283118
LZOG01000175
Spirochaetota
Brachyspira hampsonii [LZOG]
11219
11291
+
Arg
CCT
[ENA]
¡û
>W1711307487
MAOX01000012
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
59350
59278
-
Arg
CCT
[ENA]
¡û
>W1711307519
MAOY01000007
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
58077
58005
-
Arg
CCT
[ENA]
¡û
>W1711351542
MDCO01000001
Spirochaetota
Brachyspira hampsonii [MDCO]
79382
79454
+
Arg
CCT
[ENA]
¡û
>W131093644
AOMM01000250
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
2622
2694
+
Arg
CCT
[ENA]
¡û
>W131184518
ARSY01000048
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
16933
16861
-
Arg
CCT
[ENA]
¡û
>W1711507037
MKXF01000001
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
65235
65307
+
Arg
CCT
[ENA]
¡û
>WENV180116956
OARB01000444
[OARB] human gut metagenome; ENVO:feces
312
384
+
Arg
CCT
[ENA]
¢þ
>WENV180117784
OARM01000071
[OARM] human gut metagenome; ENVO:feces
5921
5993
+
Arg
CCT
[ENA]
¢þ
>W141037652
ALNZ01000037
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
40372
40300
-
Arg
CCT
[ENA]
¡û
>C181038085
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
798681
798609
-
Arg
CCT
-
¡û
>C191017009
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
602165
602093
-
Arg
CCT
-
¡û
>W1910000014
AFQM01000023
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
17893
17965
+
Arg
CCT
[ENA]
¡û
>C09102353
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1041888
1041816
-
Arg
CCT
[Ensembl]
¡û
>W1910569213
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
2222207
2222135
-
Arg
CCT
[ENA]
¡û
>C10101998
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
161442
161370
-
Arg
CCT
[Ensembl]
¡û
>C11103110
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
1098806
1098878
+
Arg
CCT
[Ensembl]
¡û
>W1510641506
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
1859061
1858989
-
Arg
CCT
[ENA]
¡û
>W1511506956
JXNA01000073
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
17019
16947
-
Arg
CCT
[ENA]
¡û
>W1511506969
JXNB01000022
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
17194
17122
-
Arg
CCT
[ENA]
¡û
>W1511507005
JXNC01000016
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
17371
17299
-
Arg
CCT
[ENA]
¡û
>W1511507044
JXND01000030
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
17193
17121
-
Arg
CCT
[ENA]
¡û
>W1511507072
JXNE01000048
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
106915
106987
+
Arg
CCT
[ENA]
¡û
>W1511507100
JXNF01000025
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
17193
17121
-
Arg
CCT
[ENA]
¡û
>W1511507147
JXNG01000053
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
107114
107186
+
Arg
CCT
[ENA]
¡û
>W1511507161
JXNH01000025
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
17045
16973
-
Arg
CCT
[ENA]
¡û
>W1511507201
JXNI01000054
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
118109
118181
+
Arg
CCT
[ENA]
¡û
>W1511507235
JXNJ01000024
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
270376
270448
+
Arg
CCT
[ENA]
¡û
>W1511507260
JXNK01000025
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
81291
81363
+
Arg
CCT
[ENA]
¡û
>W1511507303
JXNL01000129
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
105175
105247
+
Arg
CCT
[ENA]
¡û
>W1511507321
JXNM01000020
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
17371
17299
-
Arg
CCT
[ENA]
¡û
>W1511507353
JXNN01000019
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
14735
14663
-
Arg
CCT
[ENA]
¡û
>W1511507379
JXNO01000014
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
196575
196647
+
Arg
CCT
[ENA]
¡û
>W1511507414
JXNP01000015
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
17194
17122
-
Arg
CCT
[ENA]
¡û
>W1511507443
JXNQ01000003
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
82191
82263
+
Arg
CCT
[ENA]
¡û
>W1511507501
JXNR01000076
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
17413
17341
-
Arg
CCT
[ENA]
¡û
>W1511507504
JXNS01000002
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
17194
17122
-
Arg
CCT
[ENA]
¡û
>C161092130
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2682508
2682580
+
Arg
CCT
[Ensembl]
¡û
>C131001478
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
496390
496462
+
Arg
CCT
[Ensembl]
¡û
>C131003831
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1492032
1491960
-
Arg
CCT
[Ensembl]
¡û
>C131019650
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1413990
1414062
+
Arg
CCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK