This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462527 (48 seq.)
>W1711283064
LZOF01000025
Spirochaetota
Brachyspira hampsonii [LZOF]
152954
152882
-
Lys
TTT
[ENA]
¡û
>W1711283114
LZOG01000172
Spirochaetota
Brachyspira hampsonii [LZOG]
9061
9133
+
Lys
TTT
[ENA]
¡û
>W1711307494
MAOX01000030
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
17755
17682
-
Lys
TTT
[ENA]
¡û
>W1711307516
MAOY01000007
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
131839
131766
-
Lys
TTT
[ENA]
¡û
>W1711351545
MDCO01000001
Spirochaetota
Brachyspira hampsonii [MDCO]
545481
545553
+
Lys
TTT
[ENA]
¡û
>W131093662
AOMM01000480
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
5490
5562
+
Lys
TTT
[ENA]
¡û
>W131184515
ARSY01000048
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
91133
91060
-
Lys
TTT
[ENA]
¡û
>W1711507059
MKXF01000036
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
18085
18158
+
Lys
TTT
[ENA]
¡û
>WENV180116978
OARB01002172
[OARB] human gut metagenome; ENVO:feces
203
276
+
Lys
TTT
[ENA]
¢þ
>WENV180117768
OARM01000059
[OARM] human gut metagenome; ENVO:feces
63197
63124
-
Lys
TTT
[ENA]
¢þ
>W141037639
ALNZ01000027
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
28171
28243
+
Lys
TTT
[ENA]
¡û
>WENV181705951
OGPK01071108
[OGPK] human gut metagenome; faeces
456
382
-
Lys
TTT
[ENA]
¢þ
>W141275712
JADF01000002
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
46563
46636
+
Lys
TTT
[ENA]
¡û
>WENV182965286
OKWR01058718
[OKWR] human gut metagenome; human gut
111
185
+
Lys
TTT
[ENA]
¢þ
>WENV183384209
OLYN01001525
[OLYN] human gut metagenome; feces
10400
10474
+
Lys
TTT
[ENA]
¢þ
>WENV183423745
OMBG01006616
[OMBG] human gut metagenome; feces
2412
2486
+
Lys
TTT
[ENA]
¢þ
>WENV183651823
OQVU01005483
[OQVU] human gut metagenome; human gut
3405
3333
-
Lys
TTT
[ENA]
¢þ
>C181038082
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
873765
873692
-
Lys
TTT
-
¡û
>C191017006
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
682867
682795
-
Lys
TTT
-
¡û
>W1910000019
AFQM01000035
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
67392
67465
+
Lys
TTT
[ENA]
¡û
>W1910569199
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
1135531
1135603
+
Lys
TTT
[ENA]
¡û
>C09102350
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1115505
1115432
-
Lys
TTT
[Ensembl]
¡û
>C10101967
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
448602
448675
+
Lys
TTT
[Ensembl]
¡û
>C11103107
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
1017947
1018020
+
Lys
TTT
[Ensembl]
¡û
>W1510641503
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
1942234
1942161
-
Lys
TTT
[ENA]
¡û
>W1511506953
JXNA01000073
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
93513
93440
-
Lys
TTT
[ENA]
¡û
>W1511506966
JXNB01000022
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
132345
132272
-
Lys
TTT
[ENA]
¡û
>W1511507002
JXNC01000016
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
92046
91973
-
Lys
TTT
[ENA]
¡û
>W1511507041
JXND01000030
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
93951
93878
-
Lys
TTT
[ENA]
¡û
>W1511507069
JXNE01000048
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
32361
32434
+
Lys
TTT
[ENA]
¡û
>W1511507097
JXNF01000025
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
91393
91320
-
Lys
TTT
[ENA]
¡û
>W1511507144
JXNG01000053
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
32569
32642
+
Lys
TTT
[ENA]
¡û
>W1511507159
JXNH01000025
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
90781
90708
-
Lys
TTT
[ENA]
¡û
>W1511507198
JXNI01000054
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
44314
44387
+
Lys
TTT
[ENA]
¡û
>W1511507232
JXNJ01000024
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
195701
195774
+
Lys
TTT
[ENA]
¡û
>W1511507257
JXNK01000025
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
7567
7640
+
Lys
TTT
[ENA]
¡û
>W1511507300
JXNL01000129
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
31362
31435
+
Lys
TTT
[ENA]
¡û
>W1511507337
JXNM01000104
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
49094
49021
-
Lys
TTT
[ENA]
¡û
>W1511507350
JXNN01000019
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
88524
88451
-
Lys
TTT
[ENA]
¡û
>W1511507376
JXNO01000014
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
120970
121043
+
Lys
TTT
[ENA]
¡û
>W1511507411
JXNP01000015
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
90985
90912
-
Lys
TTT
[ENA]
¡û
>W1511507440
JXNQ01000003
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
7649
7722
+
Lys
TTT
[ENA]
¡û
>W1511507498
JXNR01000076
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
92538
92465
-
Lys
TTT
[ENA]
¡û
>W1511507513
JXNS01000047
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
82702
82775
+
Lys
TTT
[ENA]
¡û
>C161092127
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2608308
2608381
+
Lys
TTT
[Ensembl]
¡û
>C131001505
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
215138
215065
-
Lys
TTT
[Ensembl]
¡û
>C131003834
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1019999
1019926
-
Lys
TTT
[Ensembl]
¡û
>C131019655
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1880603
1880676
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK