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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462677 (83 seq.)
>C08004837
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
33595
33670
+
Glu
TTC
[Ensembl]
¡û
>C08004859
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
1030586
1030661
+
Glu
TTC
[Ensembl]
¡û
>C08004877
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
3504687
3504615
-
Glu
TTC
[Ensembl]
¡û
>W141461786
JFGT01000005
Gammaproteobacteria
Pantoea sp. IMH [JFGT]
275511
275586
+
Glu
TTC
[ENA]
¡û
>C181084841
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
948855
948930
+
Glu
TTC
-
¡û
>C181084871
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
3962679
3962604
-
Glu
TTC
-
¡û
>C181084872
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
3808686
3808611
-
Glu
TTC
-
¡û
>C181084895
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
2956710
2956635
-
Glu
TTC
-
¡û
>C181109664
CP024970
Gammaproteobacteria
Erwinia amylovora E-2 [CP024970]
179966
180041
+
Glu
TTC
-
¡û
>C181109711
CP024970
Gammaproteobacteria
Erwinia amylovora E-2 [CP024970]
3459136
3459061
-
Glu
TTC
-
¡û
>C191021094
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
229743
229818
+
Glu
TTC
-
¡û
>C191021119
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
3930043
3929968
-
Glu
TTC
-
¡û
>C191021120
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
3788369
3788294
-
Glu
TTC
-
¡û
>C191021134
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
3657649
3657574
-
Glu
TTC
-
¡û
>C191100119
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
3450109
3450184
+
Glu
TTC
-
¡û
>C191100129
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
4224297
4224372
+
Glu
TTC
-
¡û
>C191100154
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
2985792
2985717
-
Glu
TTC
-
¡û
>C191100169
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
2728133
2728058
-
Glu
TTC
-
¡û
>C191100174
CP033076
Gammaproteobacteria
Buttiauxella sp. 3AFRM03 [CP033076]
2353705
2353630
-
Glu
TTC
-
¡û
>C191155789
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
1475186
1475261
+
Glu
TTC
-
¡û
>C191155799
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
1698844
1698919
+
Glu
TTC
-
¡û
>C191155804
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
1740255
1740330
+
Glu
TTC
-
¡û
>C191155856
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
235061
234986
-
Glu
TTC
-
¡û
>W141820828
JQNE01000001
Gammaproteobacteria
Erwinia sp. 9145 [JQNE]
1082
1157
+
Glu
TTC
[ENA]
¡û
>W141820833
JQNE01000001
Gammaproteobacteria
Erwinia sp. 9145 [JQNE]
40701
40776
+
Glu
TTC
[ENA]
¡û
>W141820879
JQNE01000001
Gammaproteobacteria
Erwinia sp. 9145 [JQNE]
4250701
4250776
+
Glu
TTC
[ENA]
¡û
>W141820891
JQNE01000001
Gammaproteobacteria
Erwinia sp. 9145 [JQNE]
2853532
2853457
-
Glu
TTC
[ENA]
¡û
>W1910576104
JRZZ01000130
Gammaproteobacteria
Erwinia sp. B116 [JRZZ]
124
199
+
Glu
TTC
[ENA]
¡û
>W1910665043
MCFB01000050
Gammaproteobacteria
Erwinia amylovora Ea321 [MCFB]
141
216
+
Glu
TTC
[ENA]
¡û
>W1910803979
MTCH01000331
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
47
122
+
Glu
TTC
[ENA]
¡û
>W1910803980
MTCH01000338
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
81
6
-
Glu
TTC
[ENA]
¡û
>W1910803981
MTCH01000339
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
81
6
-
Glu
TTC
[ENA]
¡û
>W1911174218
NQJK01000001
Gammaproteobacteria
Erwinia amylovora MASHBO [NQJK]
1136698
1136773
+
Glu
TTC
[ENA]
¡û
>W1911174265
NQJK01000007
Gammaproteobacteria
Erwinia amylovora MASHBO [NQJK]
110042
109967
-
Glu
TTC
[ENA]
¡û
>W1911174305
NQJL01000001
Gammaproteobacteria
Erwinia amylovora VTDMSF02 [NQJL]
3652240
3652165
-
Glu
TTC
[ENA]
¡û
>W1911174380
NQJM01000001
Gammaproteobacteria
Erwinia amylovora RISTBO01-2 [NQJM]
3654030
3653955
-
Glu
TTC
[ENA]
¡û
>W1911174455
NQJN01000001
Gammaproteobacteria
Erwinia amylovora MAGFLF 2 [NQJN]
3650666
3650591
-
Glu
TTC
[ENA]
¡û
>W1911174530
NQJO01000001
Gammaproteobacteria
Erwinia amylovora CTBT3-1 [NQJO]
3647145
3647070
-
Glu
TTC
[ENA]
¡û
>W1911174605
NQJP01000001
Gammaproteobacteria
Erwinia amylovora CTBT1-1 [NQJP]
3650505
3650430
-
Glu
TTC
[ENA]
¡û
>W1911174662
NQJQ01000013
Gammaproteobacteria
Erwinia amylovora WSDA87-73 [NQJQ]
155
230
+
Glu
TTC
[ENA]
¡û
>W1911174735
NQJR01000008
Gammaproteobacteria
Erwinia amylovora VTBL01-1 [NQJR]
667
592
-
Glu
TTC
[ENA]
¡û
>W1911174862
NQJS01000093
Gammaproteobacteria
Erwinia amylovora UT5P4 [NQJS]
667
592
-
Glu
TTC
[ENA]
¡û
>W1911174929
NQJT01000041
Gammaproteobacteria
Erwinia amylovora OR6 [NQJT]
147
222
+
Glu
TTC
[ENA]
¡û
>W1911174982
NQJU01000048
Gammaproteobacteria
Erwinia amylovora OR1 [NQJU]
147
222
+
Glu
TTC
[ENA]
¡û
>W1911175062
NQJV01000104
Gammaproteobacteria
Erwinia amylovora NHWL02-2 [NQJV]
147
222
+
Glu
TTC
[ENA]
¡û
>W1911175099
NQJW01000017
Gammaproteobacteria
Erwinia amylovora NHSB01-1 [NQJW]
155
230
+
Glu
TTC
[ENA]
¡û
>W1911175209
NQJX01000060
Gammaproteobacteria
Erwinia amylovora MANB02-1 [NQJX]
147
222
+
Glu
TTC
[ENA]
¡û
>W1911175278
NQJY01000049
Gammaproteobacteria
Erwinia amylovora LA092 [NQJY]
147
222
+
Glu
TTC
[ENA]
¡û
>W1911175288
NQJZ01000010
Gammaproteobacteria
Erwinia amylovora EA110 [NQJZ]
252
177
-
Glu
TTC
[ENA]
¡û
>W1911175359
NQKA01000040
Gammaproteobacteria
Erwinia amylovora CTST01-1 [NQKA]
147
222
+
Glu
TTC
[ENA]
¡û
>W1911175453
NQKB01000055
Gammaproteobacteria
Erwinia amylovora CTMF03-1 [NQKB]
154
229
+
Glu
TTC
[ENA]
¡û
>W1911175532
NQKC01000066
Gammaproteobacteria
Erwinia amylovora CA3R [NQKC]
528
453
-
Glu
TTC
[ENA]
¡û
>W1911175541
NQKC01000073
Gammaproteobacteria
Erwinia amylovora CA3R [NQKC]
105
30
-
Glu
TTC
[ENA]
¡û
>W1810053969
PDET01000069
Gammaproteobacteria
Pantoea coffeiphila 342 [PDET]
195
270
+
Glu
TTC
[ENA]
¡û
>SRA1014407
SRR023845.124798
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
142
217
+
Glu
TTC
[SRA]
>W1510076767
CDPK01000038
Gammaproteobacteria
Erwinia sp. ErVv1 [CDPK]
231
156
-
Glu
TTC
[ENA]
¡û
>C10105430
FN434113
Gammaproteobacteria
Erwinia amylovora CFBP1430 CFPB1430 [FN434113]
179966
180041
+
Glu
TTC
[Ensembl]
¡û
>C10105443
FN434113
Gammaproteobacteria
Erwinia amylovora CFBP1430 CFPB1430 [FN434113]
313226
313301
+
Glu
TTC
[Ensembl]
¡û
>C10105506
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
179966
180041
+
Glu
TTC
[Ensembl]
¡û
>C10105554
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
3458063
3457988
-
Glu
TTC
[Ensembl]
¡û
>C10106500
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
34880
34955
+
Glu
TTC
[Ensembl]
¡û
>C10106501
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
188873
188948
+
Glu
TTC
[Ensembl]
¡û
>C10106524
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
1040688
1040763
+
Glu
TTC
[Ensembl]
¡û
>C10106547
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
3033381
3033306
-
Glu
TTC
[Ensembl]
¡û
>C10106575
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
34880
34955
+
Glu
TTC
[Ensembl]
¡û
>C10106576
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
188880
188955
+
Glu
TTC
[Ensembl]
¡û
>C10106598
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
1040718
1040793
+
Glu
TTC
[Ensembl]
¡û
>C10106621
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
3033446
3033371
-
Glu
TTC
[Ensembl]
¡û
>C11108912
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
1462061
1462136
+
Glu
TTC
[Ensembl]
¡û
>C11108926
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
1596512
1596587
+
Glu
TTC
[Ensembl]
¡û
>C11108976
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
912476
912401
-
Glu
TTC
[Ensembl]
¡û
>C11108980
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
204184
204109
-
Glu
TTC
[Ensembl]
¡û
>W1511205232
JMSO01000328
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [JMSO]
167
92
-
Glu
TTC
[ENA]
¡û
>W1511248303
JNVB01000161
Gammaproteobacteria
Erwinia oleae DAPP-PG531 [JNVB]
605
530
-
Glu
TTC
[ENA]
¡û
>W1511358723
JRXE01000076
Gammaproteobacteria
Winslowiella iniecta B120 [JRXE]
132
207
+
Glu
TTC
[ENA]
¡û
>W1511358778
JRXF01000107
Gammaproteobacteria
Winslowiella iniecta B149 [JRXF]
112
187
+
Glu
TTC
[ENA]
¡û
>C121016262
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
27732
27807
+
Glu
TTC
[Ensembl]
¡û
>C121016272
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
284659
284734
+
Glu
TTC
[Ensembl]
¡û
>C121016277
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
326083
326158
+
Glu
TTC
[Ensembl]
¡û
>C121016321
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
3845880
3845805
-
Glu
TTC
[Ensembl]
¡û
>C161107957
LN907827
Gammaproteobacteria
Duffyella gerundensis [LN907827]
20559
20634
+
Glu
TTC
[Ensembl]
¡û
>W1610994577
LXER01000084
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
79
154
+
Glu
TTC
[ENA]
¡û
>ENV000035
AB222623
Environmental sample from ENV division of INSDC
102
177
+
Glu
TTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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