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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4627 (58 seq.)
>W1710893311
LNEP01000012
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
96063
95970
-
Ser
GCT
[ENA]
¡û
>W131164744
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
232142
232049
-
Ser
GCT
[ENA]
¡û
>W131186182
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
299072
299165
+
Ser
GCT
[ENA]
¡û
>W131186409
ARWC01000001
Betaproteobacteria
Methylotenera sp. 1P/1 [ARWC]
1415242
1415149
-
Ser
GCT
[ENA]
¡û
>W131186557
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1178547
1178640
+
Ser
GCT
[ENA]
¡û
>WENV180209306
OBAK01063574
[OBAK] marine metagenome; ENVO.00002150
319
226
-
Ser
GCT
[ENA]
¢þ
>WENV180209700
OBAL01014434
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
164
71
-
Ser
GCT
[ENA]
¢þ
>WENV180359907
OBNS01065495
[OBNS] marine metagenome; Seawater
109
202
+
Ser
GCT
[ENA]
¢þ
>WENV180361804
OBNW01002042
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
425
332
-
Ser
GCT
[ENA]
¢þ
>WENV180363462
OBNY01062662
[OBNY] marine metagenome; ENVO:00002010
111
18
-
Ser
GCT
[ENA]
¢þ
>WENV180367800
OBOF01004383
[OBOF] marine metagenome; ENVO:00002010
1204
1297
+
Ser
GCT
[ENA]
¢þ
>WENV180368816
OBOG01001311
[OBOG] marine metagenome; seawater
740
647
-
Ser
GCT
[ENA]
¢þ
>WENV180369912
OBOH01010301
[OBOH] marine metagenome; ENVO:00002010
335
242
-
Ser
GCT
[ENA]
¢þ
>WENV180392903
OBPP01023068
[OBPP] marine metagenome; ENVO:00002042
227
320
+
Ser
GCT
[ENA]
¢þ
>WENV180393791
OBPR01008707
[OBPR] marine metagenome; ENVO:00002042
150
57
-
Ser
GCT
[ENA]
¢þ
>WENV180637400
OCRG01017569
[OCRG] marine metagenome; seawater
70
163
+
Ser
GCT
[ENA]
¢þ
>WENV181144452
OEHO01019787
[OEHO] metagenome; unknown
163
70
-
Ser
GCT
[ENA]
¢þ
>WENV181187817
OEOE01000039
[OEOE] activated sludge metagenome; Activated Sludge
14518
14425
-
Ser
GCT
[ENA]
¢þ
>WENV181189047
OEOF01000034
[OEOF] activated sludge metagenome; Activated Sludge
22364
22271
-
Ser
GCT
[ENA]
¢þ
>WENV181222660
OFDC01000054
[OFDC] hot springs metagenome; Water
60144
60051
-
Ser
GCT
[ENA]
¢þ
>WENV181226718
OFDN01000020
[OFDN] hot springs metagenome; Water
153439
153532
+
Ser
GCT
[ENA]
¢þ
>WENV181377159
OFRA01003154
[OFRA] wastewater metagenome; Lake Maggiore Verbania
236
143
-
Ser
GCT
[ENA]
¢þ
>WENV181384197
OFRH01035099
[OFRH] wastewater metagenome; Exp Tend NO 100WW
283
190
-
Ser
GCT
[ENA]
¢þ
>WENV181400533
OFSF01009622
[OFSF] wastewater metagenome; Exp Tend VB 100WW
746
653
-
Ser
GCT
[ENA]
¢þ
>W141350154
JCKJ01000001
Betaproteobacteria
Methylophilaceae bacterium 11 [JCKJ]
2293123
2293030
-
Ser
GCT
[ENA]
¡û
>WENV170150579
CEOC01139907
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4915
5008
+
Ser
GCT
[ENA]
¢þ
>WENV170167298
CEOO01214932
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
421
328
-
Ser
GCT
[ENA]
¢þ
>WENV170559158
CXWL01112316
[CXWL] groundwater metagenome; biofilm material
1067
1160
+
Ser
GCT
[ENA]
¢þ
>WENV170577525
FSSH01000116
[FSSH] freshwater metagenome; drinking water
271863
271956
+
Ser
GCT
[ENA]
¢þ
>WENV170609094
FUWD011248598
[FUWD] metagenome; unknown
186
93
-
Ser
GCT
[ENA]
¢þ
>WENV170705482
LNAO01000930
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3299
3206
-
Ser
GCT
[ENA]
¢þ
>WENV170706208
LNAP01001687
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1050
957
-
Ser
GCT
[ENA]
¢þ
>WENV170706209
LNAP01001689
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
227
134
-
Ser
GCT
[ENA]
¢þ
>WENV170708957
LNFM01000048
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
256639
256730
+
Ser
GCT
[ENA]
¢þ
>WENV170710294
LNFM01001474
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
63220
63127
-
Ser
GCT
[ENA]
¢þ
>WENV170842266
MDSZ01237074
[MDSZ] marine metagenome; seawater
87753
87660
-
Ser
GCT
[ENA]
¢þ
>WENV170961568
MLJW01000169
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
9164
9071
-
Ser
GCT
[ENA]
¢þ
>WENV170961680
MLJW01000485
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1903
1996
+
Ser
GCT
[ENA]
¢þ
>W09111756
ABXG01000003
Betaproteobacteria
beta proteobacterium KB13 [ABXG]
89079
88986
-
Ser
GCT
[ENA]
¡û
>W141819379
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1419258
1419165
-
Ser
GCT
[ENA]
¡û
>W1910730035
MHBU01000027
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
82980
83073
+
Ser
GCT
[ENA]
¡û
>C09107801
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
2074601
2074694
+
Ser
GCT
[Ensembl]
¡û
>W1911624008
PQVH01000013
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
44796
44889
+
Ser
GCT
[ENA]
¡û
>C151104076
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
1384997
1385090
+
Ser
GCT
[Ensembl]
¡û
>ENV09000674
ABSP01013679
Freshwater sediment metagenome lwMethane_C1
587
680
+
Ser
GCT
[ENA]
¡û
>ENV09000929
ABSQ01000490
Freshwater sediment metagenome lwMethenol_C1
605
512
-
Ser
GCT
[ENA]
¡û
>ENV09001293
ABSR01000664
Freshwater sediment metagenome lwMethylamine_C1
870
777
-
Ser
GCT
[ENA]
¡û
>ENV09001331
ABSR01001872
Freshwater sediment metagenome lwMethylamine_C1
970
877
-
Ser
GCT
[ENA]
¡û
>ENV09001345
ABSR01002384
Freshwater sediment metagenome lwMethylamine_C1
2465
2558
+
Ser
GCT
[ENA]
¡û
>C10109357
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
2420113
2420206
+
Ser
GCT
[Ensembl]
¡û
>W1511431985
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
1960937
1960844
-
Ser
GCT
[ENA]
¡û
>W1511432031
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
1252291
1252198
-
Ser
GCT
[ENA]
¡û
>W1511433545
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2292730
2292637
-
Ser
GCT
[ENA]
¡û
>C161030829
CP011001
Betaproteobacteria
Methylophilales bacterium MBRSF5 [CP011001]
972457
972550
+
Ser
GCT
[Ensembl]
¡û
>C161030871
CP011002
Betaproteobacteria
Methylophilales bacterium MBRS-H7 [CP011002]
946166
946073
-
Ser
GCT
[Ensembl]
¡û
>C161030905
CP011003
Betaproteobacteria
Methylophilales bacterium MBRSG12 [CP011003]
946166
946073
-
Ser
GCT
[Ensembl]
¡û
>WENV057316
AACY023291268
Marine microbial communities from Global Ocean Sampling (GOS)
163
70
-
Ser
GCT
[ENA]
>W1610753577
LNEP01000012
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
96063
95970
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK