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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462785 (128 seq.)
>WENV180002135
FLNY01000020
[FLNY] bioreactor metagenome; Moose rumen
29592
29521
-
Gln
CTG
[ENA]
¡û
>WENV180002288
FLNY01000544
[FLNY] bioreactor metagenome; Moose rumen
5067
5138
+
Gln
CTG
[ENA]
¡û
>WENV180002666
FLNY01003164
[FLNY] bioreactor metagenome; Moose rumen
72
1
-
Gln
CTG
[ENA]
¡û
>WENV180002774
FLNY01003845
[FLNY] bioreactor metagenome; Moose rumen
2056
1985
-
Gln
CTG
[ENA]
¡û
>WENV180002886
FLNY01004234
[FLNY] bioreactor metagenome; Moose rumen
30146
30075
-
Gln
CTG
[ENA]
¡û
>WENV180003365
FLNZ01003245
[FLNZ] bioreactor metagenome; Moose rumen
18791
18720
-
Gln
CTG
[ENA]
¡û
>WENV180097997
MTBK01222311
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
102807
102878
+
Gln
CTG
[ENA]
¡û
>WENV180198255
OBAC01015963
[OBAC] human gut metagenome; ENVO:feces
166
94
-
Gln
CTG
[ENA]
¡û
>WENV180340245
OBLI01018464
[OBLI] pig gut metagenome; faeces
1407
1479
+
Gln
CTG
[ENA]
¡û
>WENV180340246
OBLI01018464
[OBLI] pig gut metagenome; faeces
1531
1602
+
Gln
CTG
[ENA]
¡û
>WENV180404265
OBSA01000008
[OBSA] human gut metagenome; ENVO:feces
56690
56761
+
Gln
CTG
[ENA]
¡û
>WENV180404266
OBSA01000008
[OBSA] human gut metagenome; ENVO:feces
56830
56901
+
Gln
CTG
[ENA]
¡û
>WENV180404603
OBSA01013643
[OBSA] human gut metagenome; ENVO:feces
73
2
-
Gln
CTG
[ENA]
¡û
>WENV180534203
OCHM01001538
[OCHM] human gut metagenome; human gut
4849
4777
-
Gln
CTG
[ENA]
¡û
>WENV180534204
OCHM01001538
[OCHM] human gut metagenome; human gut
4729
4658
-
Gln
CTG
[ENA]
¡û
>WENV180536521
OCHN01015783
[OCHN] human gut metagenome; human gut
1103
1031
-
Gln
CTG
[ENA]
¡û
>WENV180536522
OCHN01015783
[OCHN] human gut metagenome; human gut
983
912
-
Gln
CTG
[ENA]
¡û
>WENV180562580
OCLB01023740
[OCLB] human gut metagenome; human gut
454
525
+
Gln
CTG
[ENA]
¡û
>WENV180564995
OCLF01013486
[OCLF] human gut metagenome; human gut
1090
1161
+
Gln
CTG
[ENA]
¡û
>WENV180652183
OCVV010034401
[OCVV] gut metagenome; gut
82
153
+
Gln
CTG
[ENA]
¡û
>WENV180652184
OCVV010034401
[OCVV] gut metagenome; gut
82
153
+
Gln
CTG
[ENA]
¡û
>WENV180653981
OCVV010259472
[OCVV] gut metagenome; gut
319
246
-
Gln
CTG
[ENA]
¡û
>WENV180653982
OCVV010259472
[OCVV] gut metagenome; gut
319
246
-
Gln
CTG
[ENA]
¡û
>WENV180657701
OCVV010691838
[OCVV] gut metagenome; gut
980
1051
+
Gln
CTG
[ENA]
¡û
>WENV180657702
OCVV010691838
[OCVV] gut metagenome; gut
980
1051
+
Gln
CTG
[ENA]
¡û
>WENV180658977
OCVV010819703
[OCVV] gut metagenome; gut
645
718
+
Gln
CTG
[ENA]
¡û
>WENV180658978
OCVV010819703
[OCVV] gut metagenome; gut
645
718
+
Gln
CTG
[ENA]
¡û
>WENV180659869
OCVV010890890
[OCVV] gut metagenome; gut
944
873
-
Gln
CTG
[ENA]
¡û
>WENV180659870
OCVV010890890
[OCVV] gut metagenome; gut
944
873
-
Gln
CTG
[ENA]
¡û
>WENV180660867
OCVV010971088
[OCVV] gut metagenome; gut
250
323
+
Gln
CTG
[ENA]
¡û
>WENV180660868
OCVV010971088
[OCVV] gut metagenome; gut
250
323
+
Gln
CTG
[ENA]
¡û
>WENV180666401
OCVV011211129
[OCVV] gut metagenome; gut
163
92
-
Gln
CTG
[ENA]
¡û
>WENV180666402
OCVV011211129
[OCVV] gut metagenome; gut
163
92
-
Gln
CTG
[ENA]
¡û
>WENV180674533
OCVV011352445
[OCVV] gut metagenome; gut
18295
18366
+
Gln
CTG
[ENA]
¡û
>WENV180674535
OCVV011352445
[OCVV] gut metagenome; gut
18295
18366
+
Gln
CTG
[ENA]
¡û
>WENV180675597
OCVV011358887
[OCVV] gut metagenome; gut
828
757
-
Gln
CTG
[ENA]
¡û
>WENV180675598
OCVV011358887
[OCVV] gut metagenome; gut
828
757
-
Gln
CTG
[ENA]
¡û
>WENV180676557
OCVV011450616
[OCVV] gut metagenome; gut
270
199
-
Gln
CTG
[ENA]
¡û
>WENV180676558
OCVV011450616
[OCVV] gut metagenome; gut
270
199
-
Gln
CTG
[ENA]
¡û
>WENV180677829
OCVV011800119
[OCVV] gut metagenome; gut
249
176
-
Gln
CTG
[ENA]
¡û
>WENV180677830
OCVV011800119
[OCVV] gut metagenome; gut
249
176
-
Gln
CTG
[ENA]
¡û
>WENV180680849
OCVV012669234
[OCVV] gut metagenome; gut
212
141
-
Gln
CTG
[ENA]
¡û
>WENV180680850
OCVV012669234
[OCVV] gut metagenome; gut
212
141
-
Gln
CTG
[ENA]
¡û
>WENV180681773
OCVV012800332
[OCVV] gut metagenome; gut
13
84
+
Gln
CTG
[ENA]
¡û
>WENV180681774
OCVV012800332
[OCVV] gut metagenome; gut
13
84
+
Gln
CTG
[ENA]
¡û
>WENV180683891
OCVV012849622
[OCVV] gut metagenome; gut
10768
10839
+
Gln
CTG
[ENA]
¡û
>WENV180683894
OCVV012849622
[OCVV] gut metagenome; gut
10768
10839
+
Gln
CTG
[ENA]
¡û
>WENV180684529
OCVV012859025
[OCVV] gut metagenome; gut
481
408
-
Gln
CTG
[ENA]
¡û
>WENV180684530
OCVV012859025
[OCVV] gut metagenome; gut
481
408
-
Gln
CTG
[ENA]
¡û
>WENV180685293
OCVV012870994
[OCVV] gut metagenome; gut
63846
63775
-
Gln
CTG
[ENA]
¡û
>WENV180685294
OCVV012870994
[OCVV] gut metagenome; gut
63846
63775
-
Gln
CTG
[ENA]
¡û
>WENV180685683
OCVV012875588
[OCVV] gut metagenome; gut
21056
20985
-
Gln
CTG
[ENA]
¡û
>WENV180685684
OCVV012875588
[OCVV] gut metagenome; gut
21056
20985
-
Gln
CTG
[ENA]
¡û
>WENV180686265
OCVV012883910
[OCVV] gut metagenome; gut
37917
37988
+
Gln
CTG
[ENA]
¡û
>WENV180686266
OCVV012883910
[OCVV] gut metagenome; gut
37917
37988
+
Gln
CTG
[ENA]
¡û
>WENV180850119
ODKV01003080
[ODKV] human metagenome; G_DNA_Stool
5042
5113
+
Gln
CTG
[ENA]
¡û
>WENV181153262
OEIA01037649
[OEIA] human metagenome; G_DNA_Supragingival plaque
827
898
+
Gln
CTG
[ENA]
¡û
>WENV181351545
OFMP01017686
[OFMP] human gut metagenome; human gut
1296
1368
+
Gln
CTG
[ENA]
¡û
>WENV181352562
OFMQ01007367
[OFMQ] human gut metagenome; human gut
1889
1818
-
Gln
CTG
[ENA]
¡û
>WENV181561679
OGJE01000080
[OGJE] metagenome; Human gut stool
40977
40906
-
Gln
CTG
[ENA]
¡û
>WENV181617601
OGMB01000208
[OGMB] metagenome; Human gut stool
16632
16703
+
Gln
CTG
[ENA]
¡û
>WENV181687419
OGOX01001265
[OGOX] human gut metagenome; faeces
11761
11832
+
Gln
CTG
[ENA]
¡û
>WENV182154618
OHLP01002524
[OHLP] human gut metagenome; feces
4881
4810
-
Gln
CTG
[ENA]
¡û
>WENV182427559
OIHW01000231
[OIHW] human gut metagenome; human gut
18907
18836
-
Gln
CTG
[ENA]
¡û
>WENV182478618
OIQP01000212
[OIQP] human gut metagenome; human gut
917
988
+
Gln
CTG
[ENA]
¡û
>WENV182482273
OIRE01000213
[OIRE] human gut metagenome; human gut
918
989
+
Gln
CTG
[ENA]
¡û
>WENV182483717
OIRJ01000217
[OIRJ] human gut metagenome; human gut
953
1024
+
Gln
CTG
[ENA]
¡û
>WENV182489993
OISE01000386
[OISE] human gut metagenome; human gut
918
989
+
Gln
CTG
[ENA]
¡û
>WENV182499348
OITT01000369
[OITT] human gut metagenome; human gut
918
989
+
Gln
CTG
[ENA]
¡û
>WENV182625221
OJKP01000046
[OJKP] metagenome; faeces
39092
39021
-
Gln
CTG
[ENA]
¡û
>WENV182625222
OJKP01000046
[OJKP] metagenome; faeces
38972
38901
-
Gln
CTG
[ENA]
¡û
>WENV182903723
OKSZ01000177
[OKSZ] human gut metagenome; feces
911
982
+
Gln
CTG
[ENA]
¡û
>WENV182977708
OKYF01000521
[OKYF] human gut metagenome; human gut
917
988
+
Gln
CTG
[ENA]
¡û
>WENV182978500
OKYI01000271
[OKYI] human gut metagenome; human gut
918
989
+
Gln
CTG
[ENA]
¡û
>WENV182983896
OKZK01000215
[OKZK] human gut metagenome; human gut
18914
18843
-
Gln
CTG
[ENA]
¡û
>WENV183009478
OLDR01000216
[OLDR] human gut metagenome; human gut
917
988
+
Gln
CTG
[ENA]
¡û
>WENV183034439
OLFZ01000059
[OLFZ] human gut metagenome; faeces
38627
38698
+
Gln
CTG
[ENA]
¡û
>WENV183070818
OLIS01000787
[OLIS] human gut metagenome; feces
8312
8383
+
Gln
CTG
[ENA]
¡û
>WENV183224036
OLQN01000628
[OLQN] human gut metagenome; faeces
7155
7084
-
Gln
CTG
[ENA]
¡û
>WENV183305506
OLSX01001818
[OLSX] human gut metagenome; faeces
14966
15037
+
Gln
CTG
[ENA]
¡û
>WENV183396881
OLZJ01000198
[OLZJ] human gut metagenome; feces
34430
34359
-
Gln
CTG
[ENA]
¡û
>WENV183446927
OMCS01000312
[OMCS] human gut metagenome; feces
6378
6449
+
Gln
CTG
[ENA]
¡û
>WENV183556161
OOBO01000011
[OOBO] human gut metagenome; human gut
78123
78052
-
Gln
CTG
[ENA]
¡û
>WENV183642417
OQVN01002630
[OQVN] human gut metagenome; human gut
5251
5180
-
Gln
CTG
[ENA]
¡û
>WENV183649919
OQVT01007167
[OQVT] human gut metagenome; human gut
4770
4841
+
Gln
CTG
[ENA]
¡û
>WENV183653016
OQVZ01001700
[OQVZ] human gut metagenome; human gut
722
651
-
Gln
CTG
[ENA]
¡û
>WENV170066036
CDZN01001200
[CDZN] gut metagenome; human stools
734
661
-
Gln
CTG
[ENA]
¡û
>WENV170066037
CDZN01001200
[CDZN] gut metagenome; human stools
614
541
-
Gln
CTG
[ENA]
¡û
>WENV170066038
CDZN01001200
[CDZN] gut metagenome; human stools
494
421
-
Gln
CTG
[ENA]
¡û
>WENV170066727
CDZN01016139
[CDZN] gut metagenome; human stools
10806
10879
+
Gln
CTG
[ENA]
¡û
>WENV170560752
CZCA01000337
[CZCA] anaerobic digester metagenome; anaerobic digester
3047
3118
+
Gln
CTG
[ENA]
¡û
>WENV170722062
LSQX01214843
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
22350
22421
+
Gln
CTG
[ENA]
¡û
>WENV170775495
LXOW01054587
[LXOW] bovine gut metagenome; Cow rumen
47
120
+
Gln
CTG
[ENA]
¡û
>WENV170776041
LXOW01118886
[LXOW] bovine gut metagenome; Cow rumen
222
293
+
Gln
CTG
[ENA]
¡û
>WENV170776553
LXOW01181744
[LXOW] bovine gut metagenome; Cow rumen
1172
1245
+
Gln
CTG
[ENA]
¡û
>WENV170777015
LXOW01236867
[LXOW] bovine gut metagenome; Cow rumen
368
439
+
Gln
CTG
[ENA]
¡û
>WENV170777197
LXOW01255818
[LXOW] bovine gut metagenome; Cow rumen
1907
1978
+
Gln
CTG
[ENA]
¡û
>WENV170777688
LXOW01311918
[LXOW] bovine gut metagenome; Cow rumen
32128
32055
-
Gln
CTG
[ENA]
¡û
>WENV170970241
MTKW01058052
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1099
1028
-
Gln
CTG
[ENA]
¡û
>W141557104
JHUW01000008
Bacteroidota
Prevotella sp. MA2016 [JHUW]
339546
339619
+
Gln
CTG
[ENA]
¡û
>W141557464
JHVE01000003
Bacteroidota
Prevotella sp. P6B4 [JHVE]
104775
104702
-
Gln
CTG
[ENA]
¡û
>W141559889
JHXD01000006
Bacteroidota
Xylanibacter ruminicola Ga6B6 [JHXD]
66970
66897
-
Gln
CTG
[ENA]
¡û
>W141560047
JHXG01000007
Bacteroidota
Xylanibacter brevis P6B11 [JHXG]
223307
223378
+
Gln
CTG
[ENA]
¡û
>W141732645
JNKF01000016
Bacteroidota
Prevotella sp. P6B1 [JNKF]
107436
107509
+
Gln
CTG
[ENA]
¡û
>W141732678
JNKG01000011
Bacteroidota
Prevotella sp. RM4 [JNKG]
126693
126766
+
Gln
CTG
[ENA]
¡û
>W1911154511
NPJG01000124
Bacteroidota
Prevotella sp. P5-92 [NPJG]
28203
28132
-
Gln
CTG
[ENA]
¡û
>W1911154629
NPJJ01000020
Bacteroidota
Prevotella sp. P5-108 [NPJJ]
1708
1637
-
Gln
CTG
[ENA]
¡û
>W1911154758
NPJL01000060
Bacteroidota
Prevotella sp. P4-67 [NPJL]
39744
39815
+
Gln
CTG
[ENA]
¡û
>W2010432141
FZQZ01000003
Bacteroidota
Prevotellaceae bacterium MN60 [FZQZ]
68322
68393
+
Gln
CTG
[ENA]
¡û
>W2110638639
JAHQUZ010000001
Bacteroidota
Prevotella stercorea MSK.21.23 [JAHQUZ]
38696
38625
-
Gln
CTG
[ENA]
¡û
>W2110638640
JAHQUZ010000001
Bacteroidota
Prevotella stercorea MSK.21.23 [JAHQUZ]
38556
38485
-
Gln
CTG
[ENA]
¡û
>C231305972
CP091786
Bacteroidota
Prevotella sp. E9-3 [CP091786]
2965479
2965408
-
Gln
CTG
-
¡û
>C231306032
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
1136826
1136753
-
Gln
CTG
-
¡û
>C231306086
CP091788
Bacteroidota
Prevotella sp. E2-28 [CP091788]
1042366
1042293
-
Gln
CTG
-
¡û
>C231306134
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
1208420
1208347
-
Gln
CTG
-
¡û
>C231306184
CP091791
Bacteroidota
Prevotella sp. E2-25 [CP091791]
1119173
1119100
-
Gln
CTG
-
¡û
>C231306236
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
1081990
1081917
-
Gln
CTG
-
¡û
>C231306288
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
1081985
1081912
-
Gln
CTG
-
¡û
>C241039526
CP033459
Bacteroidota
Pseudoprevotella muciniphila E39 [CP033459]
2594578
2594507
-
Gln
CTG
-
¡û
>W121007337
AFZZ01000060
Bacteroidota
Leyella stercorea DSM 18206 [AFZZ]
7237
7308
+
Gln
CTG
[ENA]
¡û
>W121007338
AFZZ01000060
Bacteroidota
Leyella stercorea DSM 18206 [AFZZ]
7377
7448
+
Gln
CTG
[ENA]
¡û
>W1710526057
FNJZ01000005
Bacteroidota
Prevotella sp. khp1 [FNJZ]
177437
177510
+
Gln
CTG
[ENA]
¡û
>W1710533526
FNRE01000011
Bacteroidota
Prevotella sp. tc2-28 [FNRE]
48825
48898
+
Gln
CTG
[ENA]
¡û
>W1710540770
FNXC01000004
Bacteroidota
Xylanibacter ruminicola [FNXC]
60886
60813
-
Gln
CTG
[ENA]
¡û
>W1710554926
FOIV01000003
Bacteroidota
Prevotella sp. khp7 [FOIV]
81205
81134
-
Gln
CTG
[ENA]
¡û
>W1710579701
FPIT01000006
Bacteroidota
Prevotellaceae bacterium HUN156 [FPIT]
54988
55061
+
Gln
CTG
[ENA]
¡û
>W1710590618
FRBD01000009
Bacteroidota
Xylanibacter ruminicola [FRBD]
41179
41252
+
Gln
CTG
[ENA]
¡û
>W1710592341
FRCJ01000006
Bacteroidota
Xylanibacter ruminicola [FRCJ]
172582
172653
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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