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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462956 (46 seq.)
>C171100622
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
1893254
1893329
+
Ala
GGC
-
¡û
>C171119404
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
2484896
2484971
+
Ala
GGC
-
¡û
>WENV180013469
FMSI01088074
[FMSI] soil metagenome; Soil
819
744
-
Ala
GGC
[ENA]
¢þ
>WENV181407498
OGCG01032808
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
963
888
-
Ala
GGC
[ENA]
¢þ
>WENV181407506
OGCG01033973
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV181407532
OGCG01036983
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
77
2
-
Ala
GGC
[ENA]
¢þ
>W141224607
BAIO01000131
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
2881
2806
-
Ala
GGC
[ENA]
¡û
>WENV170002547
AGTN01064447
[AGTN] bioreactor metagenome; poplar biomass
365
290
-
Ala
GGC
[ENA]
¢þ
>W141401971
JDTI01000003
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
51348
51273
-
Ala
GGC
[ENA]
¡û
>C181103438
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
3441537
3441462
-
Ala
GGC
-
¡û
>C181175708
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
3600340
3600415
+
Ala
GGC
-
¡û
>C191023983
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
1197484
1197409
-
Ala
GGC
-
¡û
>C191150956
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2079530
2079605
+
Ala
GGC
-
¡û
>W1910015219
BDLU01000050
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
19359
19434
+
Ala
GGC
[ENA]
¡û
>W1910015267
BDLW01000025
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
86183
86258
+
Ala
GGC
[ENA]
¡û
>W1910694751
MDTO01000323
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
41538
41613
+
Ala
GGC
[ENA]
¡û
>W1910695667
MDVZ01000285
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
16703
16628
-
Ala
GGC
[ENA]
¡û
>W1910929238
NIRT01000006
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
48692
48617
-
Ala
GGC
[ENA]
¡û
>W1910972023
NKCY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
120388
120463
+
Ala
GGC
[ENA]
¡û
>W1910990425
NKTX01000004
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
92698
92773
+
Ala
GGC
[ENA]
¡û
>W1910990466
NKTY01000002
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
162372
162297
-
Ala
GGC
[ENA]
¡û
>W1910990509
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
65719
65794
+
Ala
GGC
[ENA]
¡û
>W1910990573
NKUA01000006
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
97771
97846
+
Ala
GGC
[ENA]
¡û
>W1910990619
NKUB01000004
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
55334
55409
+
Ala
GGC
[ENA]
¡û
>W1910990675
NKUC01000012
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
11453
11528
+
Ala
GGC
[ENA]
¡û
>W1911717685
QQBI01000005
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
93160
93085
-
Ala
GGC
[ENA]
¡û
>W1810894158
QUWV01000029
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
51268
51343
+
Ala
GGC
[ENA]
¡û
>C151006041
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
3385376
3385301
-
Ala
GGC
[Ensembl]
¡û
>C11109971
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
2008396
2008471
+
Ala
GGC
[Ensembl]
¡û
>W1511318942
JPYW01000714
Alphaproteobacteria
Acidicaldus organivorans DX-1 [JPYW]
749
674
-
Ala
GGC
[ENA]
¡û
>W1511431865
JUFX01000089
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
73410
73485
+
Ala
GGC
[ENA]
¡û
>W11157660
AFCH01000032
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
111111
111036
-
Ala
GGC
[ENA]
¡û
>W11186761
CADP01000004
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
27084
27009
-
Ala
GGC
[ENA]
¡û
>W11186843
CADR01000019
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
53737
53812
+
Ala
GGC
[ENA]
¡û
>W11186878
CADS01000004
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
108117
108192
+
Ala
GGC
[ENA]
¡û
>W11186946
CADT01000005
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
91583
91508
-
Ala
GGC
[ENA]
¡û
>W1610041010
BANB01000291
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
7064
7139
+
Ala
GGC
[ENA]
¡û
>W1610041119
BANF01000012
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
82680
82605
-
Ala
GGC
[ENA]
¡û
>W1610041251
BANI01000035
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
36034
36109
+
Ala
GGC
[ENA]
¡û
>W1610041306
BANJ01000022
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
64908
64983
+
Ala
GGC
[ENA]
¡û
>W1610070895
BCTP01000030
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
32767
32692
-
Ala
GGC
[ENA]
¡û
>W1710038208
BANB01000291
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
7064
7139
+
Ala
GGC
[ENA]
¡û
>W1710038317
BANF01000012
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
82680
82605
-
Ala
GGC
[ENA]
¡û
>W1710038449
BANI01000035
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
36034
36109
+
Ala
GGC
[ENA]
¡û
>W1710038504
BANJ01000022
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
64908
64983
+
Ala
GGC
[ENA]
¡û
>W1710068217
BCTP01000030
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
32767
32692
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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