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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462970 (33 seq.)
>W1711078547
LSMZ01000049
Bacillota
Clostridium sp. link-BC1 [LSMZ]
3402
3477
+
Trp
CCA
[ENA]
¡û
>W1711222519
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
963290
963365
+
Trp
CCA
[ENA]
¡û
>C007157
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
828365
828290
-
Trp
CCA
[Ensembl]
¡û
>W08011383
ABVG01000007
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
43388
43316
-
Trp
CCA
[ENA]
¡û
>W141251470
CBQO010000018
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
178776
178701
-
Trp
CCA
[ENA]
¡û
>W141265767
CCFK01000007
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
280770
280695
-
Trp
CCA
[ENA]
¡û
>W141267365
CCNN01000007
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
280770
280695
-
Trp
CCA
[ENA]
¡û
>WENV170562751
CZCB01005043
[CZCB] anaerobic digester metagenome; anaerobic digester
1087
1012
-
Trp
CCA
[ENA]
¢þ
>WENV170688086
LFRM01227516
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
56540
56465
-
Trp
CCA
[ENA]
¢þ
>WENV170690003
LFRM01321321
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
20805
20880
+
Trp
CCA
[ENA]
¢þ
>WENV170716786
LSQX01011570
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5771
5696
-
Trp
CCA
[ENA]
¢þ
>W09100458
AABG04000028
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
17590
17515
-
Trp
CCA
[ENA]
¡û
>W09135650
ACVX01000007
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
101155
101080
-
Trp
CCA
[ENA]
¡û
>C181114030
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
2131790
2131865
+
Trp
CCA
-
¡û
>C181136168
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2342147
2342072
-
Trp
CCA
-
¡û
>C191184284
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
3129632
3129557
-
Trp
CCA
-
¡û
>W1910213052
FMJL01000037
Bacillota
Clostridium sp. N3C [FMJL]
13397
13322
-
Trp
CCA
[ENA]
¡û
>W1910884592
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
3057849
3057924
+
Trp
CCA
[ENA]
¡û
>W1911496655
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
2215732
2215657
-
Trp
CCA
[ENA]
¡û
>W1911572322
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
1813840
1813915
+
Trp
CCA
[ENA]
¡û
>W1510060443
CCXI01000019
Bacillota
Clostridium polynesiense MS1 [CCXI]
692
767
+
Trp
CCA
[ENA]
¡û
>C11101194
AP012210
Bacillota
Candidatus Arthromitus sp. SFB-rat-Yit [AP012210]
1252003
1251928
-
Trp
CCA
[Ensembl]
¡û
>C11106474
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
1810191
1810266
+
Trp
CCA
[Ensembl]
¡û
>C161060783
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
1813840
1813915
+
Trp
CCA
-
¡û
>C161097535
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
1814311
1814386
+
Trp
CCA
-
¡û
>W121061321
AJGS01000067
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
101176
101101
-
Trp
CCA
[ENA]
¡û
>W121061350
AJGT01000015
Bacillota
Acetivibrio thermocellus YS [AJGT]
136737
136812
+
Trp
CCA
[ENA]
¡û
>W1610605609
LFSC01000040
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
56540
56465
-
Trp
CCA
[ENA]
¡û
>W1610605983
LFSL01000139
Bacillota
Clostridiales bacterium DTU058 [LFSL]
20805
20880
+
Trp
CCA
[ENA]
¡û
>W1710588665
FQZO01000001
Bacillota
Clostridium amylolyticum [FQZO]
138658
138733
+
Trp
CCA
[ENA]
¡û
>W1710602347
FUYD01000004
Bacillota
Clostridium sp. USBA 49 [FUYD]
161257
161332
+
Trp
CCA
[ENA]
¡û
>W1710726896
LFSC01000040
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
56540
56465
-
Trp
CCA
[ENA]
¡û
>W1710727270
LFSL01000139
Bacillota
Clostridiales bacterium DTU058 [LFSL]
20805
20880
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK