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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462978 (11 seq.)
>C009989
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
681964
682039
+
Thr
TGT
[Ensembl]
¡û
>C010112
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
3147570
3147495
-
Thr
TGT
[Ensembl]
¡û
>WENV170661380
JXWV01017755
[JXWV] soil metagenome; rice field; organic FYM Plot
394
319
-
Thr
TGT
[ENA]
¢þ
>W09100186
AAAS03000001
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
302018
302093
+
Thr
TGT
[ENA]
¡û
>C191000621
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
3070326
3070251
-
Thr
TGT
-
¡û
>C151059716
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
725338
725413
+
Thr
TGT
[Ensembl]
¡û
>C10107454
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
3041901
3041826
-
Thr
TGT
[Ensembl]
¡û
>W1511501007
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
2605923
2605848
-
Thr
TGT
[ENA]
¡û
>C161025466
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
1247532
1247457
-
Thr
TGT
[Ensembl]
¡û
>C161080252
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
2949883
2949808
-
Thr
TGT
-
¡û
>W121010745
AGJM01000062
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
11375
11450
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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