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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463210 (114 seq.)
>W1710935802
LOKT01000001
Actinomycetota
Nocardia donostiensis [LOKT]
429104
429177
+
Arg
CCT
[ENA]
¡û
>W1711050399
LRRM01000007
Actinomycetota
Nocardia brasiliensis [LRRM]
299785
299712
-
Arg
CCT
[ENA]
¡û
>W1711276571
LZIG01000028
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
120
47
-
Arg
CCT
[ENA]
¡û
>W1711281728
LZMK01000235
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
103796
103871
+
Arg
CCT
[ENA]
¡û
>W1711281776
LZML01000124
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
238
311
+
Arg
CCT
[ENA]
¡û
>W1711285864
LZSP01000203
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
120
47
-
Arg
CCT
[ENA]
¡û
>W1711613677
MOYO01000001
Actinomycetota
Nocardia seriolae [MOYO]
528122
528049
-
Arg
CCT
[ENA]
¡û
>W1711747323
MUKP01000028
Actinomycetota
Nocardia donostiensis [MUKP]
5552
5625
+
Arg
CCT
[ENA]
¡û
>W1711750393
MUMY01000001
Actinomycetota
Nocardia donostiensis [MUMY]
122172
122099
-
Arg
CCT
[ENA]
¡û
>W1711767579
MVAC01000075
Actinomycetota
Nocardia seriolae [MVAC]
33517
33590
+
Arg
CCT
[ENA]
¡û
>C171068243
CP017839
Actinomycetota
Nocardia seriolae EM150506 [CP017839]
8070879
8070952
+
Arg
CCT
-
¡û
>W131158671
AQUI01000002
Actinomycetota
Actinopolyspora halophila DSM 43834 [AQUI]
906293
906220
-
Arg
CCT
[ENA]
¡û
>WENV180030487
FTJM01090860
[FTJM] metagenome; soil
185
112
-
Arg
CCT
[ENA]
¢þ
>WENV180031905
FTJU01000972
[FTJU] metagenome; soil
1422
1349
-
Arg
CCT
[ENA]
¢þ
>WENV180031906
FTJU01000972
[FTJU] metagenome; soil
709
636
-
Arg
CCT
[ENA]
¢þ
>W141231383
BATZ01000041
Actinomycetota
Nocardia otitidiscaviarum IFM 11049 [BATZ]
177232
177159
-
Arg
CCT
[ENA]
¡û
>W141231452
BAUA01000221
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
30304
30379
+
Arg
CCT
[ENA]
¡û
>W141233820
BAWD01000040
Actinomycetota
Nocardia seriolae N-2927 [BAWD]
33396
33469
+
Arg
CCT
[ENA]
¡û
>C181003471
AP017900
Actinomycetota
Nocardia seriolae UTF1 [AP017900]
976919
976846
-
Arg
CCT
-
¡û
>C181057471
CP022088
Actinomycetota
Nocardia brasiliensis FDAARGOS_352 [CP022088]
5688610
5688683
+
Arg
CCT
-
¡û
>C181139069
CP026746
Actinomycetota
Nocardia cyriacigeorgica MDA3349 [CP026746]
763893
763966
+
Arg
CCT
-
¡û
>C191065487
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
5485992
5485919
-
Arg
CCT
-
¡û
>C191219095
LR215973
Actinomycetota
Nocardia cyriacigeorgica 3012STDY6756504 [LR215973]
5534567
5534493
-
Arg
CCT
-
¡û
>W141759277
JNZF01000004
Actinomycetota
Nocardia carnea carneus [JNZF]
772821
772746
-
Arg
CCT
[ENA]
¡û
>W141760920
JOAJ01000005
Actinomycetota
Nocardia rhamnosiphila [JOAJ]
283930
283855
-
Arg
CCT
[ENA]
¡û
>W141767035
JOEJ01000005
Actinomycetota
Nocardia rhamnosiphila [JOEJ]
407665
407740
+
Arg
CCT
[ENA]
¡û
>W141774674
JOJF01000002
Actinomycetota
Nocardia sp. NRRL WC-3656 [JOJF]
90135
90062
-
Arg
CCT
[ENA]
¡û
>W1910897063
NGAF01000006
Actinomycetota
Nocardia cerradoensis CNM20130759 [NGAF]
409607
409532
-
Arg
CCT
[ENA]
¡û
>W1911493041
OBEG01000005
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
117101
117176
+
Arg
CCT
[ENA]
¡û
>W1911532660
OIFR01000004
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
466212
466139
-
Arg
CCT
[ENA]
¡û
>W1810282356
PSYZ01000009
Actinomycetota
Nocardia nova ATCC 10905 [PSYZ]
211150
211223
+
Arg
CCT
[ENA]
¡û
>W1810282410
PSZA01000010
Actinomycetota
Nocardia nova MDA5529 [PSZA]
29128
29055
-
Arg
CCT
[ENA]
¡û
>W1810282449
PSZB01000004
Actinomycetota
Nocardia nova MDA3397 [PSZB]
226414
226341
-
Arg
CCT
[ENA]
¡û
>W1810282497
PSZC01000001
Actinomycetota
Nocardia nova MDA3139 [PSZC]
598503
598430
-
Arg
CCT
[ENA]
¡û
>W1810282554
PSZD01000007
Actinomycetota
Nocardia nova BAA2227 [PSZD]
211235
211308
+
Arg
CCT
[ENA]
¡û
>W1810282588
PSZE01000001
Actinomycetota
Nocardia nova MDA0897 [PSZE]
160907
160980
+
Arg
CCT
[ENA]
¡û
>W1810282685
PSZF01000064
Actinomycetota
Nocardia cyriacigeorgica MDA3732 [PSZF]
1511
1438
-
Arg
CCT
[ENA]
¡û
>W1810391020
PXZE01000289
Actinomycetota
Nocardia seriolae HSY-NS01 [PXZE]
188
261
+
Arg
CCT
[ENA]
¡û
>W1810402925
PYHS01000016
Actinomycetota
Nocardia nova ATCC 33727 [PYHS]
155361
155434
+
Arg
CCT
[ENA]
¡û
>W1810402992
PYHT01000041
Actinomycetota
Nocardia sp. MDA0666 [PYHT]
300
373
+
Arg
CCT
[ENA]
¡û
>W1810659618
QJKF01000003
Actinomycetota
Nocardia tenerifensis DSM 44704 [QJKF]
523917
523990
+
Arg
CCT
[ENA]
¡û
>C151013362
CP006850
Actinomycetota
Nocardia nova SH22a [CP006850]
866010
865937
-
Arg
CCT
[Ensembl]
¡û
>W1510021287
BBYQ01000029
Actinomycetota
Nocardia seriolae U-1 [BBYQ]
1299
1226
-
Arg
CCT
[ENA]
¡û
>W1511220677
JNCT01000274
Actinomycetota
Nocardia seriolae ZJ0503 [JNCT]
1343
1270
-
Arg
CCT
[ENA]
¡û
>W1511221560
JNFP01000003
Actinomycetota
Nocardia vulneris W9851 [JNFP]
142082
142155
+
Arg
CCT
[ENA]
¡û
>C121016080
FO082843
Actinomycetota
Nocardia cyriacigeorgica GUH-2 [FO082843]
794031
793958
-
Arg
CCT
[Ensembl]
¡û
>W121055545
AIHV01000011
Actinomycetota
Nocardia brasiliensis ATCC 700358 [AIHV]
299786
299713
-
Arg
CCT
[ENA]
¡û
>W121124950
BAFQ01000175
Actinomycetota
Nocardia aobensis NBRC 100429 [BAFQ]
21838
21911
+
Arg
CCT
[ENA]
¡û
>W121125073
BAFT01000009
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
39628
39555
-
Arg
CCT
[ENA]
¡û
>W121125120
BAFU01000019
Actinomycetota
Nocardia brevicatena NBRC 12119 [BAFU]
13613
13538
-
Arg
CCT
[ENA]
¡û
>W121125170
BAFV01000013
Actinomycetota
Nocardia carnea NBRC 14403 [BAFV]
130054
129979
-
Arg
CCT
[ENA]
¡û
>W121125216
BAFW01000016
Actinomycetota
Nocardia cerradoensis NBRC 101014 [BAFW]
58300
58225
-
Arg
CCT
[ENA]
¡û
>W121125328
BAFY01000035
Actinomycetota
Nocardia cyriacigeorgica NBRC 100375 [BAFY]
8188
8261
+
Arg
CCT
[ENA]
¡û
>W121125557
BAGC01000056
Actinomycetota
Nocardia niigatensis NBRC 100131 [BAGC]
16520
16595
+
Arg
CCT
[ENA]
¡û
>W121125618
BAGD01000113
Actinomycetota
Nocardia otitidiscaviarum NBRC 14405 [BAGD]
43558
43631
+
Arg
CCT
[ENA]
¡û
>W121125795
BAGH01000049
Actinomycetota
Nocardia tenerifensis NBRC 101015 [BAGH]
13623
13548
-
Arg
CCT
[ENA]
¡û
>W121125931
BAGJ01000267
Actinomycetota
Nocardia testacea NBRC 100365 [BAGJ]
61033
60960
-
Arg
CCT
[ENA]
¡û
>W121126010
BAGL01000013
Actinomycetota
Nocardia transvalensis NBRC 15921 [BAGL]
38997
38924
-
Arg
CCT
[ENA]
¡û
>W121126059
BAGM01000014
Actinomycetota
Nocardia veterana NBRC 100344 [BAGM]
27481
27408
-
Arg
CCT
[ENA]
¡û
>W1610078291
BDAU01000016
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
71024
70949
-
Arg
CCT
[ENA]
¡û
>W1610078332
BDAV01000002
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
124688
124761
+
Arg
CCT
[ENA]
¡û
>W1610078511
BDAY01000020
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
151971
151898
-
Arg
CCT
[ENA]
¡û
>W1610078593
BDAZ01000070
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
40856
40931
+
Arg
CCT
[ENA]
¡û
>W1610078860
BDBF01000011
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
52597
52524
-
Arg
CCT
[ENA]
¡û
>W1610079129
BDBK01000005
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
99422
99495
+
Arg
CCT
[ENA]
¡û
>W1610079214
BDBL01000048
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
22840
22913
+
Arg
CCT
[ENA]
¡û
>W1610079307
BDBN01000087
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
28357
28284
-
Arg
CCT
[ENA]
¡û
>W1610079351
BDBO01000119
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
35586
35511
-
Arg
CCT
[ENA]
¡û
>W1610079640
BDBU01000023
Actinomycetota
Nocardia jejuensis NBRC 103114 [BDBU]
263731
263806
+
Arg
CCT
[ENA]
¡û
>W1610079817
BDBX01000044
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
38986
39061
+
Arg
CCT
[ENA]
¡û
>W1610079874
BDBY01000279
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
14859
14784
-
Arg
CCT
[ENA]
¡û
>W1610079900
BDBZ01000009
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
120516
120441
-
Arg
CCT
[ENA]
¡û
>W1610079962
BDCA01000010
Actinomycetota
Nocardia vermiculata NBRC 100427 [BDCA]
56730
56805
+
Arg
CCT
[ENA]
¡û
>W1610080100
BDCD01000013
Actinomycetota
Nocardia yamanashiensis NBRC 100130 [BDCD]
267912
267985
+
Arg
CCT
[ENA]
¡û
>W1610080172
BDCE01000034
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
94328
94403
+
Arg
CCT
[ENA]
¡û
>W1610080304
BDCG01000015
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
82025
81950
-
Arg
CCT
[ENA]
¡û
>W1610080382
BDCH01000049
Actinomycetota
Nocardia crassostreae [BDCH]
11009
10936
-
Arg
CCT
[ENA]
¡û
>W1610080414
BDCI01000023
Actinomycetota
Nocardia vulneris [BDCI]
371004
370931
-
Arg
CCT
[ENA]
¡û
>W1610080449
BDCJ01000006
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
279995
279920
-
Arg
CCT
[ENA]
¡û
>W1610080564
BDCL01000038
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
56964
56889
-
Arg
CCT
[ENA]
¡û
>W1610080583
BDCM01000003
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
128896
128969
+
Arg
CCT
[ENA]
¡û
>W1610080671
BDCN01000045
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
53163
53090
-
Arg
CCT
[ENA]
¡û
>W1610080900
BDCU01000023
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
18696
18621
-
Arg
CCT
[ENA]
¡û
>C131008874
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
889591
889518
-
Arg
CCT
[Ensembl]
¡û
>W1610891528
LRRM01000007
Actinomycetota
Nocardia brasiliensis [LRRM]
299785
299712
-
Arg
CCT
[ENA]
¡û
>W1611035856
LZIG01000028
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
120
47
-
Arg
CCT
[ENA]
¡û
>W1611041013
LZMK01000235
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
103796
103871
+
Arg
CCT
[ENA]
¡û
>W1611041061
LZML01000124
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
238
311
+
Arg
CCT
[ENA]
¡û
>W1611043425
LZSP01000203
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
120
47
-
Arg
CCT
[ENA]
¡û
>W1710076850
BDAU01000016
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
71024
70949
-
Arg
CCT
[ENA]
¡û
>W1710076891
BDAV01000002
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
124688
124761
+
Arg
CCT
[ENA]
¡û
>W1710077070
BDAY01000020
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
151971
151898
-
Arg
CCT
[ENA]
¡û
>W1710077152
BDAZ01000070
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
40856
40931
+
Arg
CCT
[ENA]
¡û
>W1710077419
BDBF01000011
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
52597
52524
-
Arg
CCT
[ENA]
¡û
>W1710077688
BDBK01000005
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
99422
99495
+
Arg
CCT
[ENA]
¡û
>W1710077773
BDBL01000048
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
22840
22913
+
Arg
CCT
[ENA]
¡û
>W1710077866
BDBN01000087
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
28357
28284
-
Arg
CCT
[ENA]
¡û
>W1710077910
BDBO01000119
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
35586
35511
-
Arg
CCT
[ENA]
¡û
>W1710078199
BDBU01000023
Actinomycetota
Nocardia jejuensis NBRC 103114 [BDBU]
263731
263806
+
Arg
CCT
[ENA]
¡û
>W1710078376
BDBX01000044
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
38986
39061
+
Arg
CCT
[ENA]
¡û
>W1710078433
BDBY01000279
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
14859
14784
-
Arg
CCT
[ENA]
¡û
>W1710078459
BDBZ01000009
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
120516
120441
-
Arg
CCT
[ENA]
¡û
>W1710078521
BDCA01000010
Actinomycetota
Nocardia vermiculata NBRC 100427 [BDCA]
56730
56805
+
Arg
CCT
[ENA]
¡û
>W1710078659
BDCD01000013
Actinomycetota
Nocardia yamanashiensis NBRC 100130 [BDCD]
267912
267985
+
Arg
CCT
[ENA]
¡û
>W1710078731
BDCE01000034
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
94328
94403
+
Arg
CCT
[ENA]
¡û
>W1710078863
BDCG01000015
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
82025
81950
-
Arg
CCT
[ENA]
¡û
>W1710078941
BDCH01000049
Actinomycetota
Nocardia crassostreae [BDCH]
11009
10936
-
Arg
CCT
[ENA]
¡û
>W1710078973
BDCI01000023
Actinomycetota
Nocardia vulneris [BDCI]
371004
370931
-
Arg
CCT
[ENA]
¡û
>W1710079008
BDCJ01000006
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
279995
279920
-
Arg
CCT
[ENA]
¡û
>W1710079123
BDCL01000038
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
56964
56889
-
Arg
CCT
[ENA]
¡û
>W1710079142
BDCM01000003
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
128896
128969
+
Arg
CCT
[ENA]
¡û
>W1710079230
BDCN01000045
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
53163
53090
-
Arg
CCT
[ENA]
¡û
>W1710079459
BDCU01000023
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
18696
18621
-
Arg
CCT
[ENA]
¡û
>W1710526773
FNKO01000002
Actinomycetota
Actinopolyspora saharensis [FNKO]
845896
845969
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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