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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463221 (13 seq.)
>W131155597
AQOS01000005
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
42165
42090
-
Ala
CGC
[ENA]
¡û
>C025893
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1831791
1831866
+
Ala
CGC
[Ensembl]
¡û
>C025964
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
80983
80908
-
Ala
CGC
[Ensembl]
¡û
>WENV181227466
OFDN01011858
[OFDN] hot springs metagenome; Water
594
519
-
Ala
CGC
[ENA]
¢þ
>WENV170238264
CEQM01126965
[CEQM] marine metagenome genome assembly TARA_078_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
145
70
-
Ala
CGC
[ENA]
¢þ
>WENV170248403
CEQQ01127204
[CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17162
17087
-
Ala
CGC
[ENA]
¢þ
>WENV170958345
MKWU01000886
[MKWU] sponge metagenome;
40552
40477
-
Ala
CGC
[ENA]
¢þ
>C191190026
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1365007
1364932
-
Ala
CGC
-
¡û
>C11116331
CP002361
Deinococcota
Oceanithermus profundus DSM 14977 [CP002361]
1820481
1820406
-
Ala
CGC
[Ensembl]
¡û
>C11123177
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
287593
287668
+
Ala
CGC
[Ensembl]
¡û
>C121009746
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1656359
1656284
-
Ala
CGC
[Ensembl]
¡û
>C161067103
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1694728
1694653
-
Ala
CGC
[Ensembl]
¡û
>W121056019
AIJQ01000002
Deinococcota
Thermus parvatiensis RL [AIJQ]
243430
243505
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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