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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463392 (58 seq.)
>W1710875600
LMON01000001
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
816836
816761
-
Arg
CCG
[ENA]
¡û
>W1710916196
LNUV01000002
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
125881
125806
-
Arg
CCG
[ENA]
¡û
>W1711124379
LUKB01000031
Actinomycetota
Arthrobacter sp. D2 [LUKB]
416334
416409
+
Arg
CCG
[ENA]
¡û
>W1711124437
LUKC01000041
Actinomycetota
Arthrobacter sp. D4 [LUKC]
416334
416409
+
Arg
CCG
[ENA]
¡û
>W1711466013
MJLT01000001
Actinomycetota
Arthrobacter sp. SW1 [MJLT]
327680
327755
+
Arg
CCG
[ENA]
¡û
>W1711719315
MTIC01000003
Actinomycetota
Sinomonas mesophila [MTIC]
350222
350149
-
Arg
CCG
[ENA]
¡û
>W1711724087
MTPV01000067
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
213580
213505
-
Arg
CCG
[ENA]
¡û
>C171062268
CP017421
Actinomycetota
Arthrobacter sp. ZXY-2 [CP017421]
1121507
1121432
-
Arg
CCG
-
¡û
>W131066832
ANPE02000188
Actinomycetota
Arthrobacter crystallopoietes BAB-32 [ANPE]
19223
19148
-
Arg
CCG
[ENA]
¡û
>W131172289
ARGU01000044
Actinomycetota
Arthrobacter sp. 161MFSha2.1 [ARGU]
201408
201483
+
Arg
CCG
[ENA]
¡û
>C000065
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
2872934
2873009
+
Arg
CCG
[Ensembl]
¡û
>WENV180016393
FSUT01000787
[FSUT] metagenome; soil
9
82
+
Arg
CCG
[ENA]
¢þ
>WENV180019634
FTCF01000099
[FTCF] metagenome; soil
7952
7879
-
Arg
CCG
[ENA]
¢þ
>W141065974
AQRI01000002
Actinomycetota
Arthrobacter sp. MA-N2 [AQRI]
157435
157510
+
Arg
CCG
[ENA]
¡û
>W141106059
AVPD01000002
Actinomycetota
Arthrobacter sp. AK-YN10 [AVPD]
282428
282501
+
Arg
CCG
[ENA]
¡û
>W141169246
AXVQ01000002
Actinomycetota
Arthrobacter sp. 35W [AXVQ]
754013
754086
+
Arg
CCG
[ENA]
¡û
>W141213570
AZSC01000066
Actinomycetota
Arthrobacter sp. H5 [AZSC]
26917
26992
+
Arg
CCG
[ENA]
¡û
>W141216713
AZVC01000001
Actinomycetota
Paenarthrobacter nicotinovorans 231Sha2.1M6 [AZVC]
576725
576650
-
Arg
CCG
[ENA]
¡û
>W141217124
AZVJ01000001
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
194471
194546
+
Arg
CCG
[ENA]
¡û
>W141241452
CAHH01000073
Actinomycetota
Timonella senegalensis JC301 [CAHH]
65116
65041
-
Arg
CCG
[ENA]
¡û
>W141278851
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
664290
664365
+
Arg
CCG
[ENA]
¡û
>C181033511
CP018863
Actinomycetota
Arthrobacter crystallopoietes DSM 20117 [CP018863]
4714189
4714263
+
Arg
CCG
-
¡û
>C181064971
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
3314253
3314326
+
Arg
CCG
-
¡û
>W1910181574
BJMD01000006
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
128185
128112
-
Arg
CCG
[ENA]
¡û
>W1911532745
OIVI01000316
Actinomycetota
Arthrobacter alpinus [OIVI]
2426
2353
-
Arg
CCG
[ENA]
¡û
>W1911566776
PCPC01000002
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
90036
90109
+
Arg
CCG
[ENA]
¡û
>W1911567550
PCPR01000002
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
201661
201734
+
Arg
CCG
[ENA]
¡û
>W1911798250
QYLP01000037
Actinomycetota
Arthrobacter celericrescens NEAU-SA2 [QYLP]
73388
73463
+
Arg
CCG
[ENA]
¡û
>W1810172000
PJMC01000005
Actinomycetota
Arthrobacter sp. AFG20 [PJMC]
186597
186524
-
Arg
CCG
[ENA]
¡û
>W1810368336
PVZO01000003
Actinomycetota
Arthrobacter woluwensis NM-35 [PVZO]
56256
56181
-
Arg
CCG
[ENA]
¡û
>W1810676791
QKMG01000001
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
808853
808780
-
Arg
CCG
[ENA]
¡û
>W1810677228
QKMO01000001
Actinomycetota
Arthrobacter sp. RC1.1 241 [QKMO]
416565
416638
+
Arg
CCG
[ENA]
¡û
>W1810695582
QLNP01000105
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
208635
208562
-
Arg
CCG
[ENA]
¡û
>W1810786764
QRCU01000038
Actinomycetota
Arthrobacter silvisoli NEAU-SA1 [QRCU]
17580
17505
-
Arg
CCG
[ENA]
¡û
>W1510018490
BBUD01000144
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
757
682
-
Arg
CCG
[ENA]
¡û
>W1510641771
CVLG01000002
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
461101
461176
+
Arg
CCG
[ENA]
¡û
>W1511319640
JPZK01000029
Actinomycetota
Arthrobacter sp. MWB30 [JPZK]
132545
132620
+
Arg
CCG
[ENA]
¡û
>W1511398225
JTDL01000037
Actinomycetota
Sinomonas humi MUSC 117 [JTDL]
121780
121855
+
Arg
CCG
[ENA]
¡û
>C161001332
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
4035949
4035874
-
Arg
CCG
-
¡û
>C161068063
CP014196
Actinomycetota
Arthrobacter sp. ATCC 21022 [CP014196]
2851825
2851900
+
Arg
CCG
-
¡û
>W121086823
AKKK01000031
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
7146
7071
-
Arg
CCG
[ENA]
¡û
>W121123827
BAEG01000085
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
42632
42705
+
Arg
CCG
[ENA]
¡û
>W1610067333
BCQN01000001
Actinomycetota
Arthrobacter woluwensis NBRC 107840 [BCQN]
356162
356237
+
Arg
CCG
[ENA]
¡û
>W1610081875
BDDW01000001
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
833709
833634
-
Arg
CCG
[ENA]
¡û
>C131002314
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
3051873
3051948
+
Arg
CCG
[Ensembl]
¡û
>W1610527119
JPWK01000008
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
198344
198269
-
Arg
CCG
[ENA]
¡û
>W1610737946
LMON01000001
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
816836
816761
-
Arg
CCG
[ENA]
¡û
>W1610774435
LNUV01000002
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
125881
125806
-
Arg
CCG
[ENA]
¡û
>W1710064706
BCQN01000001
Actinomycetota
Arthrobacter woluwensis NBRC 107840 [BCQN]
356162
356237
+
Arg
CCG
[ENA]
¡û
>W1710080590
BDDW01000001
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
833709
833634
-
Arg
CCG
[ENA]
¡û
>W1710084522
BDMH01000008
Actinomycetota
Paenarthrobacter ureafaciens KI72 [BDMH]
174000
174073
+
Arg
CCG
[ENA]
¡û
>W1710508493
FMWE01000001
Actinomycetota
Arthrobacter sp. UNCCL28 [FMWE]
822974
822899
-
Arg
CCG
[ENA]
¡û
>W1710518927
FNEI01000011
Actinomycetota
Arthrobacter cupressi [FNEI]
41698
41623
-
Arg
CCG
[ENA]
¡û
>W1710526418
FNKH01000002
Actinomycetota
Arthrobacter crystallopoietes [FNKH]
3519695
3519620
-
Arg
CCG
[ENA]
¡û
>W1710529001
FNNR01000002
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
438006
437931
-
Arg
CCG
[ENA]
¡û
>W1710535429
FNSN01000003
Actinomycetota
Arthrobacter woluwensis [FNSN]
1541735
1541660
-
Arg
CCG
[ENA]
¡û
>W1710541433
FNYI01000001
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
849648
849573
-
Arg
CCG
[ENA]
¡û
>W1710603416
FUZB01000001
Actinomycetota
Arthrobacter sp. 31Cvi3.1E [FUZB]
132303
132378
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK