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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463820 (133 seq.)
>W131156835
AQQF01000207
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
57087
57161
+
Pro
TGG
[ENA]
¡û
>W1711187732
LWPS01000093
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
21909
21834
-
Pro
TGG
[ENA]
¡û
>W131156828
AQQF01000165
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
74
-1
-
Pro
TGG
[ENA]
¡û
>C171021729
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3806157
3806082
-
Pro
TGG
-
¡û
>C171021732
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3805781
3805706
-
Pro
TGG
-
¡û
>C171021768
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
656235
656160
-
Pro
TGG
-
¡û
>C171047539
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
414104
414179
+
Pro
TGG
-
¡û
>C171047586
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
3431072
3431147
+
Pro
TGG
-
¡û
>W131001748
AGYK01000016
Bacillota
Clostridium butyricum 60E.3 [AGYK]
78606
78681
+
Pro
TGG
[ENA]
¡û
>W131001758
AGYK01000019
Bacillota
Clostridium butyricum 60E.3 [AGYK]
122557
122632
+
Pro
TGG
[ENA]
¡û
>W131110768
APKZ01000001
Bacillota
Clostridium butyricum DKU-01 [APKZ]
23658
23583
-
Pro
TGG
[ENA]
¡û
>W131110785
APKZ01000040
Bacillota
Clostridium butyricum DKU-01 [APKZ]
826
751
-
Pro
TGG
[ENA]
¡û
>W131110788
APKZ01000040
Bacillota
Clostridium butyricum DKU-01 [APKZ]
450
375
-
Pro
TGG
[ENA]
¡û
>W131232781
AUJN01000013
Bacillota
Clostridium butyricum AGR2140 [AUJN]
31239
31164
-
Pro
TGG
[ENA]
¡û
>W131232805
AUJN01000030
Bacillota
Clostridium butyricum AGR2140 [AUJN]
22203
22278
+
Pro
TGG
[ENA]
¡û
>W131232808
AUJN01000030
Bacillota
Clostridium butyricum AGR2140 [AUJN]
22579
22654
+
Pro
TGG
[ENA]
¡û
>WENV180191182
OAXB01003854
[OAXB] human gut metagenome; faeces
1636
1711
+
Pro
TGG
[ENA]
¢þ
>WENV180191312
OAXB01020192
[OAXB] human gut metagenome; faeces
254
329
+
Pro
TGG
[ENA]
¢þ
>WENV180278485
OBHX01004520
[OBHX] metagenome; feces
8661
8736
+
Pro
TGG
[ENA]
¢þ
>WENV180333297
OBLF01000492
[OBLF] metagenome; feces
22789
22864
+
Pro
TGG
[ENA]
¢þ
>WENV180333690
OBLF01001621
[OBLF] metagenome; feces
153
78
-
Pro
TGG
[ENA]
¢þ
>WENV180347689
OBLO01000931
[OBLO] metagenome; feces
23420
23495
+
Pro
TGG
[ENA]
¢þ
>WENV180348870
OBLO01014599
[OBLO] metagenome; feces
153
78
-
Pro
TGG
[ENA]
¢þ
>WENV180413500
OBVB01002605
[OBVB] human gut metagenome; faeces
1911
1986
+
Pro
TGG
[ENA]
¢þ
>WENV181555157
OGIT01000051
[OGIT] metagenome; Human gut stool
57090
57165
+
Pro
TGG
[ENA]
¢þ
>WENV181798340
OGRV01000044
[OGRV] human gut metagenome; fecal sample 3 from infant 4
21977
21902
-
Pro
TGG
[ENA]
¢þ
>WENV181798412
OGRV01000198
[OGRV] human gut metagenome; fecal sample 3 from infant 4
20894
20969
+
Pro
TGG
[ENA]
¢þ
>WENV181798792
OGRX01000303
[OGRX] human gut metagenome; fecal sample 2 from infant 8
7891
7966
+
Pro
TGG
[ENA]
¢þ
>WENV181798805
OGRX01000354
[OGRX] human gut metagenome; fecal sample 2 from infant 8
20904
20979
+
Pro
TGG
[ENA]
¢þ
>WENV181801353
OGSB01000116
[OGSB] human gut metagenome; fecal sample 5 from infant 3
56756
56831
+
Pro
TGG
[ENA]
¢þ
>WENV181801450
OGSB01000335
[OGSB] human gut metagenome; fecal sample 5 from infant 3
20917
20992
+
Pro
TGG
[ENA]
¢þ
>WENV181801928
OGSC01000373
[OGSC] human gut metagenome; fecal sample 8 from infant 5
4340
4415
+
Pro
TGG
[ENA]
¢þ
>WENV181801933
OGSC01000420
[OGSC] human gut metagenome; fecal sample 8 from infant 5
20916
20991
+
Pro
TGG
[ENA]
¢þ
>WENV181805052
OGSH01000451
[OGSH] human gut metagenome; fecal sample 5 from infant 6
428
353
-
Pro
TGG
[ENA]
¢þ
>WENV181805098
OGSH01000640
[OGSH] human gut metagenome; fecal sample 5 from infant 6
5197
5122
-
Pro
TGG
[ENA]
¢þ
>WENV181805332
OGSI01000090
[OGSI] human gut metagenome; fecal sample 4 from infant 8
18241
18166
-
Pro
TGG
[ENA]
¢þ
>WENV181805380
OGSI01000269
[OGSI] human gut metagenome; fecal sample 4 from infant 8
22150
22225
+
Pro
TGG
[ENA]
¢þ
>WENV181805643
OGSJ01000149
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
17155
17080
-
Pro
TGG
[ENA]
¢þ
>WENV181805791
OGSJ01000561
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
340
265
-
Pro
TGG
[ENA]
¢þ
>WENV181807190
OGSN01010012
[OGSN] human gut metagenome; fecal sample 7 from infant 8
428
353
-
Pro
TGG
[ENA]
¢þ
>WENV181807834
OGSQ01000340
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
4360
4435
+
Pro
TGG
[ENA]
¢þ
>WENV181807837
OGSQ01000346
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
428
353
-
Pro
TGG
[ENA]
¢þ
>WENV181809418
OGST01000113
[OGST] human gut metagenome; fecal sample 7 from infant 6
20157
20082
-
Pro
TGG
[ENA]
¢þ
>WENV181809553
OGST01000492
[OGST] human gut metagenome; fecal sample 7 from infant 6
20917
20992
+
Pro
TGG
[ENA]
¢þ
>WENV181810584
OGSV01000288
[OGSV] human gut metagenome; fecal sample 4 from infant 3
7919
7994
+
Pro
TGG
[ENA]
¢þ
>WENV181810596
OGSV01000311
[OGSV] human gut metagenome; fecal sample 4 from infant 3
20917
20992
+
Pro
TGG
[ENA]
¢þ
>WENV181810674
OGSV01001087
[OGSV] human gut metagenome; fecal sample 4 from infant 3
3173
3098
-
Pro
TGG
[ENA]
¢þ
>WENV181811013
OGSX01001868
[OGSX] human gut metagenome; fecal sample 1 from infant 8
1666
1741
+
Pro
TGG
[ENA]
¢þ
>WENV181811119
OGSY01000008
[OGSY] human gut metagenome; fecal sample 5 from infant 8
196960
197035
+
Pro
TGG
[ENA]
¢þ
>WENV181811148
OGSY01000079
[OGSY] human gut metagenome; fecal sample 5 from infant 8
20152
20077
-
Pro
TGG
[ENA]
¢þ
>WENV181811589
OGSZ01000045
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
20165
20090
-
Pro
TGG
[ENA]
¢þ
>WENV181811672
OGSZ01000332
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
159
84
-
Pro
TGG
[ENA]
¢þ
>WENV181813679
OGTD01000138
[OGTD] human gut metagenome; fecal sample 1 from infant 3
3236
3161
-
Pro
TGG
[ENA]
¢þ
>WENV181813757
OGTD01000585
[OGTD] human gut metagenome; fecal sample 1 from infant 3
8836
8911
+
Pro
TGG
[ENA]
¢þ
>WENV181814041
OGTE01000704
[OGTE] human gut metagenome; fecal sample 2 from infant 3
1728
1803
+
Pro
TGG
[ENA]
¢þ
>WENV181814077
OGTE01004111
[OGTE] human gut metagenome; fecal sample 2 from infant 3
343
268
-
Pro
TGG
[ENA]
¢þ
>WENV181814407
OGTG01000085
[OGTG] human gut metagenome; fecal sample 1 from infant 4
20151
20076
-
Pro
TGG
[ENA]
¢þ
>WENV181815033
OGTI01000146
[OGTI] human gut metagenome; fecal sample 5 from infant 1
5843
5768
-
Pro
TGG
[ENA]
¢þ
>WENV181815089
OGTI01000875
[OGTI] human gut metagenome; fecal sample 5 from infant 1
1338
1413
+
Pro
TGG
[ENA]
¢þ
>WENV181817502
OGTN01000299
[OGTN] human gut metagenome; fecal sample 5 from infant 4
20096
20021
-
Pro
TGG
[ENA]
¢þ
>WENV181818237
OGTS01000051
[OGTS] human gut metagenome; fecal sample 4 from infant 4
22133
22058
-
Pro
TGG
[ENA]
¢þ
>WENV181818321
OGTS01000223
[OGTS] human gut metagenome; fecal sample 4 from infant 4
20887
20962
+
Pro
TGG
[ENA]
¢þ
>WENV181818591
OGTT01000272
[OGTT] human gut metagenome; fecal sample 6 from infant 8
425
350
-
Pro
TGG
[ENA]
¢þ
>WENV181818635
OGTT01000635
[OGTT] human gut metagenome; fecal sample 6 from infant 8
4895
4820
-
Pro
TGG
[ENA]
¢þ
>WENV181818864
OGTU01000048
[OGTU] human gut metagenome; fecal sample 6 from infant 4
51028
51103
+
Pro
TGG
[ENA]
¢þ
>WENV181823080
OGUH01008059
[OGUH] human gut metagenome; fecal sample 3 from infant 3
178
103
-
Pro
TGG
[ENA]
¢þ
>W141206232
AZLX01000021
Bacillota
Clostridium butyricum DORA_1 [AZLX]
283
208
-
Pro
TGG
[ENA]
¡û
>W141258966
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
580179
580104
-
Pro
TGG
[ENA]
¡û
>W141258969
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
579803
579728
-
Pro
TGG
[ENA]
¡û
>W141259009
CBYK010000015
Bacillota
Clostridium butyricum [CBYK]
8830
8755
-
Pro
TGG
[ENA]
¡û
>WENV182827041
OKCW01005607
[OKCW] human gut metagenome; human gut
61
136
+
Pro
TGG
[ENA]
¢þ
>WENV182841556
OKHW01000437
[OKHW] human gut metagenome; human gut
1543
1468
-
Pro
TGG
[ENA]
¢þ
>WENV182848004
OKKE01003248
[OKKE] human gut metagenome; human gut
1711
1786
+
Pro
TGG
[ENA]
¢þ
>WENV182864779
OKQE01002060
[OKQE] human gut metagenome; human gut
1738
1813
+
Pro
TGG
[ENA]
¢þ
>WENV182944533
OKVJ01000216
[OKVJ] human gut metagenome; human gut
9813
9888
+
Pro
TGG
[ENA]
¢þ
>WENV182944536
OKVJ01000216
[OKVJ] human gut metagenome; human gut
10189
10264
+
Pro
TGG
[ENA]
¢þ
>WENV182944765
OKVJ01001387
[OKVJ] human gut metagenome; human gut
3840
3765
-
Pro
TGG
[ENA]
¢þ
>WENV182952829
OKVX01000050
[OKVX] human gut metagenome; human gut
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV182952944
OKVX01000724
[OKVX] human gut metagenome; human gut
4284
4359
+
Pro
TGG
[ENA]
¢þ
>WENV183067178
OLIL01015900
[OLIL] metagenome; faeces
190
115
-
Pro
TGG
[ENA]
¢þ
>WENV183067191
OLIL01016706
[OLIL] metagenome; faeces
401
326
-
Pro
TGG
[ENA]
¢þ
>WENV183780951
PPYF01188671
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4431
4506
+
Pro
TGG
[ENA]
¢þ
>WENV183780985
PPYF01189627
[PPYF] human gut metagenome; stool from patient with Crohn's disease
78
3
-
Pro
TGG
[ENA]
¢þ
>WENV170016564
AZMM01000983
[AZMM] human gut metagenome; premature infant gut
161
86
-
Pro
TGG
[ENA]
¢þ
>WENV170016630
AZMM01018825
[AZMM] human gut metagenome; premature infant gut
55248
55323
+
Pro
TGG
[ENA]
¢þ
>C191171158
CP039702
Bacillota
Clostridium butyricum [CP039702]
472911
472986
+
Pro
TGG
-
¡û
>C191171257
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1563659
1563734
+
Pro
TGG
-
¡û
>C191171283
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2220377
2220452
+
Pro
TGG
-
¡û
>C191171286
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2220753
2220828
+
Pro
TGG
-
¡û
>W09132824
ACOM01000002
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
36067
35992
-
Pro
TGG
[ENA]
¡û
>W09132829
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
472775
472700
-
Pro
TGG
[ENA]
¡û
>W09132832
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
472399
472324
-
Pro
TGG
[ENA]
¡û
>W1910213012
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
24781
24706
-
Pro
TGG
[ENA]
¡û
>W1910213024
FMJL01000006
Bacillota
Clostridium sp. N3C [FMJL]
23682
23607
-
Pro
TGG
[ENA]
¡û
>W1910637957
LRDH01000013
Bacillota
Clostridium butyricum 300064 [LRDH]
78589
78664
+
Pro
TGG
[ENA]
¡û
>W1910637967
LRDH01000057
Bacillota
Clostridium butyricum 300064 [LRDH]
91
166
+
Pro
TGG
[ENA]
¡û
>W1910637992
LRDH01000141
Bacillota
Clostridium butyricum 300064 [LRDH]
20906
20981
+
Pro
TGG
[ENA]
¡û
>W1810250519
PQCS01000009
Bacillota
Clostridium sp. 3-3 [PQCS]
270
195
-
Pro
TGG
[ENA]
¡û
>W1810250560
PQCS01000153
Bacillota
Clostridium sp. 3-3 [PQCS]
4983
4908
-
Pro
TGG
[ENA]
¡û
>W1810805937
QRUG01000006
Bacillota
Clostridium butyricum AF25-25 [QRUG]
339
264
-
Pro
TGG
[ENA]
¡û
>W1810805954
QRUG01000020
Bacillota
Clostridium butyricum AF25-25 [QRUG]
56673
56748
+
Pro
TGG
[ENA]
¡û
>W1511350218
JRMA01000024
Bacillota
Clostridium butyricum INCQS635 [JRMA]
17720
17795
+
Pro
TGG
[ENA]
¡û
>W1511350236
JRMA01000084
Bacillota
Clostridium butyricum INCQS635 [JRMA]
11315
11240
-
Pro
TGG
[ENA]
¡û
>W1511350262
JRMA01000225
Bacillota
Clostridium butyricum INCQS635 [JRMA]
1494
1569
+
Pro
TGG
[ENA]
¡û
>W1511365583
JSEG01000008
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
30743
30668
-
Pro
TGG
[ENA]
¡û
>W1511365605
JSEG01000021
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
568
493
-
Pro
TGG
[ENA]
¡û
>W1511365608
JSEG01000021
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
192
117
-
Pro
TGG
[ENA]
¡û
>W1511501390
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3371553
3371478
-
Pro
TGG
[ENA]
¡û
>W1511501393
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3371177
3371102
-
Pro
TGG
[ENA]
¡û
>W1511501424
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
161879
161804
-
Pro
TGG
[ENA]
¡û
>W1511554753
JZWE01000048
Bacillota
Clostridium sp. IBUN22A [JZWE]
110203
110278
+
Pro
TGG
[ENA]
¡û
>W1511554771
JZWE01000105
Bacillota
Clostridium sp. IBUN22A [JZWE]
155
80
-
Pro
TGG
[ENA]
¡û
>W1511554790
JZWE01000175
Bacillota
Clostridium sp. IBUN22A [JZWE]
15
90
+
Pro
TGG
[ENA]
¡û
>W1511554829
JZWF01000043
Bacillota
Clostridium sp. IBUN125C [JZWF]
8773
8698
-
Pro
TGG
[ENA]
¡û
>W1511554855
JZWF01000070
Bacillota
Clostridium sp. IBUN125C [JZWF]
433
358
-
Pro
TGG
[ENA]
¡û
>W1511554862
JZWG01000025
Bacillota
Clostridium sp. IBUN13A [JZWG]
551
476
-
Pro
TGG
[ENA]
¡û
>W1511554865
JZWG01000025
Bacillota
Clostridium sp. IBUN13A [JZWG]
175
100
-
Pro
TGG
[ENA]
¡û
>W1511554888
JZWG01000098
Bacillota
Clostridium sp. IBUN13A [JZWG]
99335
99410
+
Pro
TGG
[ENA]
¡û
>W1511554962
JZWH01000051
Bacillota
Clostridium sp. IBUN62F [JZWH]
15744
15819
+
Pro
TGG
[ENA]
¡û
>W1511554965
JZWH01000051
Bacillota
Clostridium sp. IBUN62F [JZWH]
16120
16195
+
Pro
TGG
[ENA]
¡û
>W1511554973
JZWH01000062
Bacillota
Clostridium sp. IBUN62F [JZWH]
74080
74155
+
Pro
TGG
[ENA]
¡û
>W1511554974
JZWH01000066
Bacillota
Clostridium sp. IBUN62F [JZWH]
155
80
-
Pro
TGG
[ENA]
¡û
>W1511554976
JZWH01000077
Bacillota
Clostridium sp. IBUN62F [JZWH]
69
144
+
Pro
TGG
[ENA]
¡û
>C161054098
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
62611
62686
+
Pro
TGG
-
¡û
>C161054124
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
724864
724939
+
Pro
TGG
-
¡û
>C161055877
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
412599
412674
+
Pro
TGG
-
¡û
>C161055918
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
3583330
3583405
+
Pro
TGG
-
¡û
>C161076401
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
397858
397933
+
Pro
TGG
-
¡û
>C161076432
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
3544980
3545055
+
Pro
TGG
-
¡û
>W1610627652
LIDW01000017
Bacillota
Clostridium butyricum [LIDW]
82872
82947
+
Pro
TGG
[ENA]
¡û
>W1610627667
LIDW01000054
Bacillota
Clostridium butyricum [LIDW]
380
305
-
Pro
TGG
[ENA]
¡û
>W1710758779
LIDW01000017
Bacillota
Clostridium butyricum [LIDW]
82872
82947
+
Pro
TGG
[ENA]
¡û
>W1710758794
LIDW01000054
Bacillota
Clostridium butyricum [LIDW]
380
305
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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