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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464140 (91 seq.)
>W1710905380
LNNF01000169
Bacteroidota
Flavobacterium psychrophilum [LNNF]
95100
95175
+
Gly
GCC
[ENA]
¡û
>W1710914547
LNTP01000157
Bacteroidota
Flavobacterium psychrophilum [LNTP]
41490
41565
+
Gly
GCC
[ENA]
¡û
>W1710914590
LNTQ01000128
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
7876
7801
-
Gly
GCC
[ENA]
¡û
>W1711053997
LRTL01000005
Bacteroidota
Flavobacterium psychrophilum [LRTL]
68859
68934
+
Gly
GCC
[ENA]
¡û
>W1711431517
MIJV01000033
Bacteroidota
Flavobacterium psychrophilum [MIJV]
63356
63281
-
Gly
GCC
[ENA]
¡û
>W1711431546
MIJW01000038
Bacteroidota
Flavobacterium psychrophilum [MIJW]
72056
71981
-
Gly
GCC
[ENA]
¡û
>W1711712443
MTBY01000007
Bacteroidota
Flavobacterium psychrophilum [MTBY]
128754
128679
-
Gly
GCC
[ENA]
¡û
>W1711712478
MTBZ01000007
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
50605
50530
-
Gly
GCC
[ENA]
¡û
>W1711712569
MTCB01000005
Bacteroidota
Flavobacterium psychrophilum [MTCB]
73734
73809
+
Gly
GCC
[ENA]
¡û
>W1711712599
MTCC01000003
Bacteroidota
Flavobacterium psychrophilum [MTCC]
97073
96998
-
Gly
GCC
[ENA]
¡û
>W1711712657
MTCD01000319
Bacteroidota
Flavobacterium psychrophilum [MTCD]
10936
11011
+
Gly
GCC
[ENA]
¡û
>W131214023
ATTM01000001
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
256839
256914
+
Gly
GCC
[ENA]
¡û
>W131229110
AUGN01000007
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
41586
41661
+
Gly
GCC
[ENA]
¡û
>C009535
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
480868
480793
-
Gly
GCC
[Ensembl]
¡û
>WENV180039991
LLBY010280481
[LLBY] soil metagenome; soil from tomato rhizosphere
3091
3018
-
Gly
GCC
[ENA]
¢þ
>WENV180041152
LLBZ010053577
[LLBZ] soil metagenome; soil from tomato rhizosphere
1251
1178
-
Gly
GCC
[ENA]
¢þ
>WENV170559410
CXWL01122121
[CXWL] groundwater metagenome; biofilm material
14
87
+
Gly
GCC
[ENA]
¢þ
>WENV170604143
FUWD010369654
[FUWD] metagenome; unknown
410
485
+
Gly
GCC
[ENA]
¢þ
>C181220292
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
483585
483512
-
Gly
GCC
-
¡û
>W1910183302
BJNP01000021
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
53377
53450
+
Gly
GCC
[ENA]
¡û
>W1910184578
BJSV01000018
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
1434
1361
-
Gly
GCC
[ENA]
¡û
>W1910184634
BJSW01000057
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
1434
1361
-
Gly
GCC
[ENA]
¡û
>W1910184651
BJSX01000011
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
73213
73140
-
Gly
GCC
[ENA]
¡û
>W1910184685
BJSY01000009
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
38277
38350
+
Gly
GCC
[ENA]
¡û
>W1910184720
BJSZ01000004
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
1434
1361
-
Gly
GCC
[ENA]
¡û
>W1910184757
BJTA01000005
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
1434
1361
-
Gly
GCC
[ENA]
¡û
>W1910184866
BJTD01000007
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
69968
69895
-
Gly
GCC
[ENA]
¡û
>W1910184923
BJTE01000033
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
1336
1263
-
Gly
GCC
[ENA]
¡û
>W1910184969
BJTF01000066
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
38276
38349
+
Gly
GCC
[ENA]
¡û
>W1910502976
FYBY01000021
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
63261
63188
-
Gly
GCC
[ENA]
¡û
>W1910503036
FYBZ01000068
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
89026
89099
+
Gly
GCC
[ENA]
¡û
>W1910503094
FYCB01000061
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
21949
21876
-
Gly
GCC
[ENA]
¡û
>W1910503100
FYCC01000001
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
63259
63186
-
Gly
GCC
[ENA]
¡û
>W1910503140
FYCD01000014
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
63260
63187
-
Gly
GCC
[ENA]
¡û
>W1910503195
FYCF01000006
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
63259
63186
-
Gly
GCC
[ENA]
¡û
>W1910503263
FYCG01000047
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
82440
82367
-
Gly
GCC
[ENA]
¡û
>W1910503266
FYCH01000003
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
68185
68258
+
Gly
GCC
[ENA]
¡û
>W1910503324
FYCI01000045
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
69478
69405
-
Gly
GCC
[ENA]
¡û
>W1910503529
FYCM01000187
Bacteroidota
Flavobacterium psychrophilum FPC 831 [FYCM]
13686
13759
+
Gly
GCC
[ENA]
¡û
>W1910503540
FYCN01000064
Bacteroidota
Flavobacterium psychrophilum JIP 08/99 [FYCN]
12995
12922
-
Gly
GCC
[ENA]
¡û
>W1910503559
FYCO01000018
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
88469
88542
+
Gly
GCC
[ENA]
¡û
>W1910503590
FYCP01000001
Bacteroidota
Flavobacterium psychrophilum KU 051128-10 [FYCP]
34816
34743
-
Gly
GCC
[ENA]
¡û
>W1910503620
FYCQ01000120
Bacteroidota
Flavobacterium psychrophilum KU 061128-1 [FYCQ]
239
166
-
Gly
GCC
[ENA]
¡û
>W1910503651
FYCR01000365
Bacteroidota
Flavobacterium psychrophilum JIP 16/00 [FYCR]
1429
1356
-
Gly
GCC
[ENA]
¡û
>W1910503653
FYCS01000001
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
63259
63186
-
Gly
GCC
[ENA]
¡û
>W1910503695
FYCT01000012
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
68185
68258
+
Gly
GCC
[ENA]
¡û
>W1910503732
FYCU01000102
Bacteroidota
Flavobacterium psychrophilum KU 060626-4 [FYCU]
34262
34189
-
Gly
GCC
[ENA]
¡û
>W1910503749
FYCV01000054
Bacteroidota
Flavobacterium psychrophilum KU 060626-59 [FYCV]
7112
7185
+
Gly
GCC
[ENA]
¡û
>W1910503801
FYCW01000043
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
63259
63186
-
Gly
GCC
[ENA]
¡û
>W1910503836
FYCX01000052
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
90838
90911
+
Gly
GCC
[ENA]
¡û
>W1910503863
FYCY01000031
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
63259
63186
-
Gly
GCC
[ENA]
¡û
>W1910503883
FYCZ01000007
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
68185
68258
+
Gly
GCC
[ENA]
¡û
>W1910503945
FYDA01000069
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
88921
88994
+
Gly
GCC
[ENA]
¡û
>W1910503954
FYDB01000002
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
71794
71721
-
Gly
GCC
[ENA]
¡û
>W1910504023
FYDC01000041
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
63259
63186
-
Gly
GCC
[ENA]
¡û
>W1910504130
FYDF01000125
Bacteroidota
Flavobacterium psychrophilum LVDJ XP189 [FYDF]
13678
13751
+
Gly
GCC
[ENA]
¡û
>W1910505678
FYEO01000040
Bacteroidota
Flavobacterium psychrophilum FPC 840 [FYEO]
1356
1283
-
Gly
GCC
[ENA]
¡û
>W1910576494
JSCD01000008
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
94625
94698
+
Gly
GCC
[ENA]
¡û
>W1910576632
JSWL01000007
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
73734
73807
+
Gly
GCC
[ENA]
¡û
>W1910728173
MGWJ01000010
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
4964
5037
+
Gly
GCC
[ENA]
¡û
>W1910809495
MUHE01000014
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
71980
71907
-
Gly
GCC
[ENA]
¡û
>C151018528
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
496267
496192
-
Gly
GCC
[Ensembl]
¡û
>C151018576
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
481733
481658
-
Gly
GCC
[Ensembl]
¡û
>C151030365
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
496015
495940
-
Gly
GCC
[Ensembl]
¡û
>C151038989
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
433710
433635
-
Gly
GCC
[Ensembl]
¡û
>C151039027
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
424832
424757
-
Gly
GCC
[Ensembl]
¡û
>C151039064
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
435373
435298
-
Gly
GCC
[Ensembl]
¡û
>C151039554
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
421762
421687
-
Gly
GCC
[Ensembl]
¡û
>C151065087
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
479251
479176
-
Gly
GCC
-
¡û
>C151065135
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
479045
478970
-
Gly
GCC
-
¡û
>C151072387
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
1318972
1319047
+
Gly
GCC
-
¡û
>W1511357152
JRWA01000006
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
260587
260512
-
Gly
GCC
[ENA]
¡û
>W1511357181
JRWB01000013
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
190173
190098
-
Gly
GCC
[ENA]
¡û
>W1511357230
JRWC01000003
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
266928
266853
-
Gly
GCC
[ENA]
¡û
>W1511357296
JRWD01000101
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
69034
69109
+
Gly
GCC
[ENA]
¡û
>W1511357343
JRWE01000104
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
69032
69107
+
Gly
GCC
[ENA]
¡û
>W1511357390
JRWF01000097
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
69045
69120
+
Gly
GCC
[ENA]
¡û
>C161024454
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
479235
479160
-
Gly
GCC
-
¡û
>C161024502
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
479732
479657
-
Gly
GCC
-
¡û
>C161024550
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
479777
479702
-
Gly
GCC
-
¡û
>W1610062193
BCNG01000020
Bacteroidota
Flavobacterium psychrophilum [BCNG]
1414
1339
-
Gly
GCC
[ENA]
¡û
>W1610764394
LNNF01000169
Bacteroidota
Flavobacterium psychrophilum [LNNF]
95100
95175
+
Gly
GCC
[ENA]
¡û
>W1610772906
LNTP01000157
Bacteroidota
Flavobacterium psychrophilum [LNTP]
41490
41565
+
Gly
GCC
[ENA]
¡û
>W1610772949
LNTQ01000128
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
7876
7801
-
Gly
GCC
[ENA]
¡û
>W1610895185
LRTL01000005
Bacteroidota
Flavobacterium psychrophilum [LRTL]
68859
68934
+
Gly
GCC
[ENA]
¡û
>W1710059734
BCNG01000020
Bacteroidota
Flavobacterium psychrophilum [BCNG]
1414
1339
-
Gly
GCC
[ENA]
¡û
>W1710087875
BDSH01000050
Bacteroidota
Flavobacterium psychrophilum [BDSH]
1413
1338
-
Gly
GCC
[ENA]
¡û
>W1710507327
FMVE01000008
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
90167
90242
+
Gly
GCC
[ENA]
¡û
>W1710541072
FNYA01000007
Bacteroidota
Flavobacterium terrigena [FNYA]
164027
164100
+
Gly
GCC
[ENA]
¡û
>W1710555830
FOJT01000004
Bacteroidota
Flavobacterium swingsii [FOJT]
354508
354583
+
Gly
GCC
[ENA]
¡û
>W1710591927
FRCC01000001
Bacteroidota
Flavobacterium flevense [FRCC]
487617
487544
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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