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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464225 (58 seq.)
>W1710785346
LJHT01000111
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
53826
53899
+
Gly
TCC
[ENA]
¡û
>W1710877834
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
319
246
-
Gly
TCC
[ENA]
¡û
>W131166930
ARCV01000006
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
43082
43155
+
Gly
TCC
[ENA]
¡û
>W131170311
ARFL01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
17112
17039
-
Gly
TCC
[ENA]
¡û
>W131178086
ARLH01000068
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
1443
1370
-
Gly
TCC
[ENA]
¡û
>W1711387433
MEGQ01000014
Betaproteobacteria
Thiomonas sp. SCN 64-16 [MEGQ]
53565
53638
+
Gly
TCC
[ENA]
¡û
>W1711793357
MWLO01000124
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
18193
18120
-
Gly
TCC
[ENA]
¡û
>C171103257
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
1661229
1661156
-
Gly
TCC
-
¡û
>C171119352
CP021455
Betaproteobacteria
Comamonas serinivorans DSM 26136 [CP021455]
4494127
4494054
-
Gly
TCC
-
¡û
>WENV180393665
OBPR01000571
[OBPR] marine metagenome; ENVO:00002042
1839
1766
-
Gly
TCC
[ENA]
¡û
>WENV180692339
OCZS010477186
[OCZS] soil metagenome; soil
156
83
-
Gly
TCC
[ENA]
¡û
>WENV180835730
ODKE01009907
[ODKE] human metagenome; G_DNA_Supragingival plaque
284
211
-
Gly
TCC
[ENA]
¡û
>WENV180983684
ODVF01028720
[ODVF] human metagenome; G_DNA_Supragingival plaque
1114
1187
+
Gly
TCC
[ENA]
¡û
>WENV181188576
OEOE01203794
[OEOE] activated sludge metagenome; Activated Sludge
91
164
+
Gly
TCC
[ENA]
¡û
>WENV183709982
PDWI01037579
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
357
284
-
Gly
TCC
[ENA]
¡û
>WENV170690878
LFRM01367511
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
429
502
+
Gly
TCC
[ENA]
¡û
>WENV170710394
LNFM01001674
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
492
419
-
Gly
TCC
[ENA]
¡û
>WENV170711967
LNFM01008728
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
15210
15283
+
Gly
TCC
[ENA]
¡û
>WENV170713954
LNFM01048148
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1240
1167
-
Gly
TCC
[ENA]
¡û
>WENV170714748
LNFM01097603
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
158
231
+
Gly
TCC
[ENA]
¡û
>C181158449
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
358228
358155
-
Gly
TCC
-
¡û
>W1910699735
MERU01000013
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_63_240 [MERU]
979
906
-
Gly
TCC
[ENA]
¡û
>W1910700356
MESK01000112
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
113159
113232
+
Gly
TCC
[ENA]
¡û
>W1911502776
OEQA01000003
Betaproteobacteria
Ottowia sp. Marseille-P4747 [OEQA]
259300
259373
+
Gly
TCC
[ENA]
¡û
>W2010677278
JACCKX010000001
Betaproteobacteria
Ottowia beijingensis GCS-AN-3 [JACCKX]
1534108
1534035
-
Gly
TCC
[ENA]
¡û
>W2010702745
JACHHO010000005
Betaproteobacteria
Inhella inkyongensis DSM 23958 [JACHHO]
277159
277232
+
Gly
TCC
[ENA]
¡û
>W2010733593
JACIVI010000005
Betaproteobacteria
Piscinibacter sp. SJAQ100 [JACIVI]
38768
38695
-
Gly
TCC
[ENA]
¡û
>W2110331207
JADKYZ010000013
Betaproteobacteria
Diaphorobacter sp. NR2-3-3-1 [JADKYZ]
108145
108072
-
Gly
TCC
[ENA]
¡û
>W2110362757
JADOUB010000001
Betaproteobacteria
Rubrivivax gelatinosus CBS [JADOUB]
2150751
2150824
+
Gly
TCC
[ENA]
¡û
>W2110406190
JAEDAL010000006
Betaproteobacteria
Inhella gelatinilytica 4Y10 [JAEDAL]
952
879
-
Gly
TCC
[ENA]
¡û
>W2110406307
JAEDAO010000001
Betaproteobacteria
Ramlibacter sp. CrO1 [JAEDAO]
635681
635754
+
Gly
TCC
[ENA]
¡û
>W2110438436
JAEPWM010000001
Betaproteobacteria
Ramlibacter ginsenosidimutans KACC 17527 [JAEPWM]
943631
943558
-
Gly
TCC
[ENA]
¡û
>W2110445552
JAERRA010000001
Betaproteobacteria
Piscinibacter sp. Jin2 [JAERRA]
207077
207004
-
Gly
TCC
[ENA]
¡û
>W2110566489
JAGQDE010000006
Betaproteobacteria
Ideonella sp. 4Y11 [JAGQDE]
202292
202219
-
Gly
TCC
[ENA]
¡û
>W10105798
ACXV01000015
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
77673
77746
+
Gly
TCC
[ENA]
¡û
>C211137517
CP060714
Betaproteobacteria
Diaphorobacter ruginosibacter DSM 27467 [CP060714]
4943869
4943942
+
Gly
TCC
-
¡û
>C211362928
CP078069
Betaproteobacteria
Comamonas sp. NLF-1-9 [CP078069]
2711117
2711190
+
Gly
TCC
-
¡û
>C231572327
CP116009
Betaproteobacteria
Ramlibacter tataouinensis DMF-7 [CP116009]
2145510
2145437
-
Gly
TCC
-
¡û
>C241138740
CP049905
Betaproteobacteria
Diaphorobacter sp. HDW4B [CP049905]
3037844
3037917
+
Gly
TCC
-
¡û
>C241138864
CP049910
Betaproteobacteria
Diaphorobacter sp. HDW4A [CP049910]
5910805
5910878
+
Gly
TCC
-
¡û
>WENV11100572
AERA01025695
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
1046
973
-
Gly
TCC
[ENA]
¡û
>W11108118
ACXV01000015
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
77673
77746
+
Gly
TCC
[ENA]
¡û
>W1510741299
CYHF01000011
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
1129
1056
-
Gly
TCC
[ENA]
¡û
>C121016359
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
3629915
3629842
-
Gly
TCC
[Ensembl]
¡û
>W121060082
AJFF01000039
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
324
251
-
Gly
TCC
[ENA]
¡û
>W1610085384
CTRI01000003
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
568858
568931
+
Gly
TCC
[ENA]
¡û
>W1610085427
CTRJ01000007
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
632505
632578
+
Gly
TCC
[ENA]
¡û
>W1610085459
CTRK01000001
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
254
181
-
Gly
TCC
[ENA]
¡û
>W1610085500
CTRL01000001
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
254
181
-
Gly
TCC
[ENA]
¡û
>W1610085553
CTRM01000025
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
61183
61256
+
Gly
TCC
[ENA]
¡û
>W1610632440
LIPV01000011
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
1129
1056
-
Gly
TCC
[ENA]
¡û
>W1610740180
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
319
246
-
Gly
TCC
[ENA]
¡û
>W1710089973
CTRI01000003
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
568858
568931
+
Gly
TCC
[ENA]
¡û
>W1710090016
CTRJ01000007
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
632505
632578
+
Gly
TCC
[ENA]
¡û
>W1710090048
CTRK01000001
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
254
181
-
Gly
TCC
[ENA]
¡û
>W1710090089
CTRL01000001
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
254
181
-
Gly
TCC
[ENA]
¡û
>W1710090142
CTRM01000025
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
61183
61256
+
Gly
TCC
[ENA]
¡û
>W1710766826
LIPV01000011
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
1129
1056
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK