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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46424 (62 seq.)
>W1710866852
LMHU01000011
Actinomycetota
Terrabacter sp. Root181 [LMHU]
111748
111835
+
Ser
GGA
[ENA]
¡û
>W1710868175
LMIW01000010
Actinomycetota
Terrabacter sp. Root85 [LMIW]
417793
417706
-
Ser
GGA
[ENA]
¡û
>W1710880235
LMSE01000005
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
95892
95979
+
Ser
GGA
[ENA]
¡û
>W1710881141
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
289829
289916
+
Ser
GGA
[ENA]
¡û
>W1710881202
LMSX01000007
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
310222
310135
-
Ser
GGA
[ENA]
¡û
>W1710996456
LQBL01000003
Actinomycetota
Serinicoccus chungangensis [LQBL]
150148
150061
-
Ser
GGA
[ENA]
¡û
>W1711187485
LWPN01000112
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
2238
2325
+
Ser
GGA
[ENA]
¡û
>W1711491927
MKJZ01000003
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
70025
69938
-
Ser
GGA
[ENA]
¡û
>W1711492048
MKKB01000428
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
158088
158175
+
Ser
GGA
[ENA]
¡û
>W1711492233
MKKF01000022
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
253234
253147
-
Ser
GGA
[ENA]
¡û
>W1711517406
MLJO01000002
Actinomycetota
Intrasporangium flavum flava [MLJO]
131626
131713
+
Ser
GGA
[ENA]
¡û
>W1711749129
MUMG01000276
Actinomycetota
Crossiella equi [MUMG]
5381
5466
+
Ser
GGA
[ENA]
¡û
>W1711749165
MUMH01000042
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
33611
33696
+
Ser
GGA
[ENA]
¡û
>C171034676
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
2758513
2758425
-
Ser
GGA
-
¡û
>W131217181
ATWM01000010
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
3496
3409
-
Ser
GGA
[ENA]
¡û
>W131185518
ARTT01000006
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
16679
16766
+
Ser
GGA
[ENA]
¡û
>W131217044
ATWJ01000011
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
209605
209518
-
Ser
GGA
[ENA]
¡û
>W131227576
AUFG01000019
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
23466
23553
+
Ser
GGA
[ENA]
¡û
>WENV180690170
OCZS010000191
[OCZS] soil metagenome; soil
18074
18161
+
Ser
GGA
[ENA]
¢þ
>WENV181371514
OFQV01010995
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
1105
1018
-
Ser
GGA
[ENA]
¢þ
>WENV181390367
OFRO01041982
[OFRO] wastewater metagenome; Exp Tend NO 10WW
147
60
-
Ser
GGA
[ENA]
¢þ
>W141142473
AWQS01000017
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
31780
31693
-
Ser
GGA
[ENA]
¡û
>W141143092
AWSA01000062
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
10761
10674
-
Ser
GGA
[ENA]
¡û
>W141170083
AXWW01000045
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
66212
66299
+
Ser
GGA
[ENA]
¡û
>W141242912
CAIZ01000131
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
15922
15835
-
Ser
GGA
[ENA]
¡û
>W141243080
CAJC01000202
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
5986
6073
+
Ser
GGA
[ENA]
¡û
>WENV170551548
CXWJ01011934
[CXWJ] wastewater metagenome; activated sludge
15937
15852
-
Ser
GGA
[ENA]
¢þ
>WENV170553418
CXWK01017756
[CXWK] wastewater metagenome; activated sludge
3903
3990
+
Ser
GGA
[ENA]
¢þ
>C181196319
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
259189
259102
-
Ser
GGA
-
¡û
>C181197178
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
2005791
2005704
-
Ser
GGA
-
¡û
>W09109299
ABUD01000002
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
177935
177848
-
Ser
GGA
[ENA]
¡û
>C191150913
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
3544838
3544925
+
Ser
GGA
-
¡û
>C191158380
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
3253515
3253602
+
Ser
GGA
-
¡û
>C191183679
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
2871844
2871757
-
Ser
GGA
-
¡û
>W141564777
JIBA01000006
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
20299
20386
+
Ser
GGA
[ENA]
¡û
>W141766730
JOEE01000001
Actinomycetota
Phycicoccus jejuensis [JOEE]
381195
381108
-
Ser
GGA
[ENA]
¡û
>W141766798
JOEF01000003
Actinomycetota
Allokutzneria albata [JOEF]
371276
371191
-
Ser
GGA
[ENA]
¡û
>W141773550
JOIN01000007
Actinomycetota
Corynebacterium variabile [JOIN]
242319
242406
+
Ser
GGA
[ENA]
¡û
>W1911495866
OBQK01000011
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
95543
95630
+
Ser
GGA
[ENA]
¡û
>W1911814591
QZFT01000047
Actinomycetota
Pseudonocardiaceae bacterium YIM PH 21723 [QZFT]
38240
38327
+
Ser
GGA
[ENA]
¡û
>W1911817429
QZMN01000008
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
83984
84071
+
Ser
GGA
[ENA]
¡û
>W1810173596
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
2627060
2627147
+
Ser
GGA
[ENA]
¡û
>W1810189360
PKIZ01000005
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
110865
110951
+
Ser
GGA
[ENA]
¡û
>W1810364551
PVTI01000009
Actinomycetota
Knoellia remsis ATCC BAA-1496 [PVTI]
17014
17101
+
Ser
GGA
[ENA]
¡û
>W1810535029
QDDJ01000003
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
18111
18024
-
Ser
GGA
[ENA]
¡û
>W1810697605
QLVD01000032
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
154389
154302
-
Ser
GGA
[ENA]
¡û
>C151090481
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
576989
576902
-
Ser
GGA
-
¡û
>C10108057
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
2668942
2669029
+
Ser
GGA
[Ensembl]
¡û
>C11111453
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
457657
457570
-
Ser
GGA
[Ensembl]
¡û
>W1511534736
JYOE01000013
Actinomycetota
Terrabacter sp. 28 [JYOE]
159850
159763
-
Ser
GGA
[ENA]
¡û
>W11155917
AFAQ01000552
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
3756
3669
-
Ser
GGA
[ENA]
¡û
>W11177042
AFYF01000086
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
15011
14924
-
Ser
GGA
[ENA]
¡û
>W1610068244
BCRE01000047
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
38201
38114
-
Ser
GGA
[ENA]
¡û
>W1610729198
LMHU01000011
Actinomycetota
Terrabacter sp. Root181 [LMHU]
111748
111835
+
Ser
GGA
[ENA]
¡û
>W1610730521
LMIW01000010
Actinomycetota
Terrabacter sp. Root85 [LMIW]
417793
417706
-
Ser
GGA
[ENA]
¡û
>W1610742581
LMSE01000005
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
95892
95979
+
Ser
GGA
[ENA]
¡û
>W1610743487
LMSW01000001
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
289829
289916
+
Ser
GGA
[ENA]
¡û
>W1610743548
LMSX01000007
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
310222
310135
-
Ser
GGA
[ENA]
¡û
>W1610851113
LQBL01000003
Actinomycetota
Serinicoccus chungangensis [LQBL]
150148
150061
-
Ser
GGA
[ENA]
¡û
>W1710065617
BCRE01000047
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
38201
38114
-
Ser
GGA
[ENA]
¡û
>W1710552763
FOHB01000005
Actinomycetota
Pedococcus cremeus [FOHB]
159906
159993
+
Ser
GGA
[ENA]
¡û
>W1710610297
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
1466081
1465994
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK