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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464380 (99 seq.)
>W1710877090
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70212
70287
+
Asp
GTC
[ENA]
¡û
>W1710877102
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76302
76377
+
Asp
GTC
[ENA]
¡û
>W1710877120
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
182
257
+
Asp
GTC
[ENA]
¡û
>W1710909378
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
916
991
+
Asp
GTC
[ENA]
¡û
>W1710909402
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258110
258185
+
Asp
GTC
[ENA]
¡û
>W1711116960
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
207
282
+
Asp
GTC
[ENA]
¡û
>W1711116989
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774652
774577
-
Asp
GTC
[ENA]
¡û
>W1711117013
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
758
683
-
Asp
GTC
[ENA]
¡û
>W1711166800
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1983160
1983085
-
Asp
GTC
[ENA]
¡û
>W131205108
ATCL01000011
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
174
249
+
Asp
GTC
[ENA]
¡û
>W131241544
BARY01000002
Bacillota
Exiguobacterium sp. OS-77 [BARY]
261185
261260
+
Asp
GTC
[ENA]
¡û
>W131241561
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928643
928568
-
Asp
GTC
[ENA]
¡û
>W1711603255
MOLV01000005
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
562
487
-
Asp
GTC
[ENA]
¡û
>W1711603294
MOLV01000045
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
923
848
-
Asp
GTC
[ENA]
¡û
>W1711603304
MOLV01000046
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
1157
1082
-
Asp
GTC
[ENA]
¡û
>W1711632636
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
529
604
+
Asp
GTC
[ENA]
¡û
>W1711632657
MPSZ01000004
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
221739
221814
+
Asp
GTC
[ENA]
¡û
>W1711632681
MPSZ01000023
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
899
824
-
Asp
GTC
[ENA]
¡û
>W1712017224
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
409
484
+
Asp
GTC
[ENA]
¡û
>W1712017302
NESR01000017
Bacillota
Kurthia gibsonii [NESR]
557
482
-
Asp
GTC
[ENA]
¡û
>W1712017330
NESR01000042
Bacillota
Kurthia gibsonii [NESR]
964
889
-
Asp
GTC
[ENA]
¡û
>C171040517
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
461724
461799
+
Asp
GTC
-
¡û
>C171040552
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162399
1162474
+
Asp
GTC
-
¡û
>C171040574
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
179053
178978
-
Asp
GTC
-
¡û
>C171072092
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
34590
34665
+
Asp
GTC
-
¡û
>C171072133
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
723751
723826
+
Asp
GTC
-
¡û
>C171072152
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
3002861
3002786
-
Asp
GTC
-
¡û
>w003701
AADW02000048
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
44
121
+
Asp
GTC
[ENA]
¡û
>w003695
AADW02000036
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
13936
14013
+
Asp
GTC
[ENA]
¡û
>w003678
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
54691
54768
+
Asp
GTC
[ENA]
¡û
>w003660
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
1630
1707
+
Asp
GTC
[ENA]
¡û
>w003634
AADW02000003
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
279892
279815
-
Asp
GTC
[ENA]
¡û
>C08004771
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
34663
34738
+
Asp
GTC
[Ensembl]
¡û
>C08004806
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
704348
704423
+
Asp
GTC
[Ensembl]
¡û
>C08004824
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
2789822
2789750
-
Asp
GTC
[Ensembl]
¡û
>WENV170022618
BCQK01026944
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
517
592
+
Asp
GTC
[ENA]
¢þ
>W141484796
JFYW01000010
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
242055
242130
+
Asp
GTC
[ENA]
¡û
>W141563048
JHZS01000001
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
256369
256444
+
Asp
GTC
[ENA]
¡û
>W141563067
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
2090542
2090467
-
Asp
GTC
[ENA]
¡û
>W141563154
JHZU01000002
Bacillota
Exiguobacterium undae 190-11 [JHZU]
1009
934
-
Asp
GTC
[ENA]
¡û
>W141563171
JHZU01000004
Bacillota
Exiguobacterium undae 190-11 [JHZU]
268132
268207
+
Asp
GTC
[ENA]
¡û
>W141563200
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
999140
999065
-
Asp
GTC
[ENA]
¡û
>W141563215
JHZV01000002
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1020
945
-
Asp
GTC
[ENA]
¡û
>W141563229
JHZV01000003
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
285309
285384
+
Asp
GTC
[ENA]
¡û
>W141563247
JHZV01000005
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1001572
1001497
-
Asp
GTC
[ENA]
¡û
>W141701491
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1439371
1439446
+
Asp
GTC
[ENA]
¡û
>W141701524
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1154776
1154701
-
Asp
GTC
[ENA]
¡û
>W141701542
JMKS01000005
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
239166
239241
+
Asp
GTC
[ENA]
¡û
>W141730828
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2217005
2216930
-
Asp
GTC
[ENA]
¡û
>W141730913
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
282808
282883
+
Asp
GTC
[ENA]
¡û
>W141730930
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2754191
2754266
+
Asp
GTC
[ENA]
¡û
>W141730963
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2478145
2478070
-
Asp
GTC
[ENA]
¡û
>W141730980
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1600297
1600372
+
Asp
GTC
[ENA]
¡û
>W141731015
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287155
2287230
+
Asp
GTC
[ENA]
¡û
>W141731033
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1311616
1311541
-
Asp
GTC
[ENA]
¡û
>C141009936
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
677623
677698
+
Asp
GTC
[Ensembl]
¡û
>C141009953
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
3163854
3163929
+
Asp
GTC
[Ensembl]
¡û
>C141009961
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
2885243
2885168
-
Asp
GTC
[Ensembl]
¡û
>W1911770654
QXJB01000001
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
384
459
+
Asp
GTC
[ENA]
¡û
>W1911770674
QXJB01000003
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
272809
272884
+
Asp
GTC
[ENA]
¡û
>W1911770699
QXJB01000021
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
920
845
-
Asp
GTC
[ENA]
¡û
>W1810760520
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
1893238
1893163
-
Asp
GTC
[ENA]
¡û
>W1810760538
QPKF01000002
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
645
570
-
Asp
GTC
[ENA]
¡û
>W1810760562
QPKF01000017
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
127
202
+
Asp
GTC
[ENA]
¡û
>W1511403796
JTLL01000008
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
152213
152288
+
Asp
GTC
[ENA]
¡û
>W1511403831
JTLL01000043
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
920
845
-
Asp
GTC
[ENA]
¡û
>W1511686074
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
41201
41126
-
Asp
GTC
[ENA]
¡û
>W1511686100
LFQN01000039
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
8031
8106
+
Asp
GTC
[ENA]
¡û
>W1511686115
LFQN01000053
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
99
174
+
Asp
GTC
[ENA]
¡û
>W1511699956
LGIW01000003
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
172
247
+
Asp
GTC
[ENA]
¡û
>W1511699985
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
361
436
+
Asp
GTC
[ENA]
¡û
>C131001788
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
34572
34647
+
Asp
GTC
[Ensembl]
¡û
>C131001819
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
662695
662770
+
Asp
GTC
[Ensembl]
¡û
>C131001837
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
2579627
2579552
-
Asp
GTC
[Ensembl]
¡û
>W1610521254
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
863
938
+
Asp
GTC
[ENA]
¡û
>W1610589614
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
753
678
-
Asp
GTC
[ENA]
¡û
>W1610589626
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
616
691
+
Asp
GTC
[ENA]
¡û
>W1610589640
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
918
843
-
Asp
GTC
[ENA]
¡û
>W1610589657
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
403
478
+
Asp
GTC
[ENA]
¡û
>W1610589691
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
17998
18073
+
Asp
GTC
[ENA]
¡û
>W1610589699
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
99
174
+
Asp
GTC
[ENA]
¡û
>W1610739436
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70212
70287
+
Asp
GTC
[ENA]
¡û
>W1610739448
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76302
76377
+
Asp
GTC
[ENA]
¡û
>W1610739466
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
182
257
+
Asp
GTC
[ENA]
¡û
>W1610767737
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
916
991
+
Asp
GTC
[ENA]
¡û
>W1610767761
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258110
258185
+
Asp
GTC
[ENA]
¡û
>W1610928319
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
207
282
+
Asp
GTC
[ENA]
¡û
>W1610928348
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774652
774577
-
Asp
GTC
[ENA]
¡û
>W1610928372
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
758
683
-
Asp
GTC
[ENA]
¡û
>W1610977340
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1983160
1983085
-
Asp
GTC
[ENA]
¡û
>W1710511213
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
916
991
+
Asp
GTC
[ENA]
¡û
>W1710511237
FMYN01000004
Bacillota
Exiguobacterium enclense [FMYN]
258110
258185
+
Asp
GTC
[ENA]
¡û
>W1710619734
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
863
938
+
Asp
GTC
[ENA]
¡û
>W1710708894
LDQV01000030
Bacillota
Exiguobacterium indicum [LDQV]
753
678
-
Asp
GTC
[ENA]
¡û
>W1710708906
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
616
691
+
Asp
GTC
[ENA]
¡û
>W1710708920
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
918
843
-
Asp
GTC
[ENA]
¡û
>W1710708937
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
403
478
+
Asp
GTC
[ENA]
¡û
>W1710708971
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
17998
18073
+
Asp
GTC
[ENA]
¡û
>W1710708979
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
99
174
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK