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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464662 (9 seq.)
>W1711091934
LTDO01000002
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
476173
476248
+
Val
TAC
[ENA]
¡û
>C171071960
CP018051
Gammaproteobacteria
Francisella orientalis F1 [CP018051]
413416
413491
+
Val
TAC
-
¡û
>WENV170640965
JFJP01031708
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
14142
14217
+
Val
TAC
[ENA]
¢þ
>C141010036
CP006875
Gammaproteobacteria
Francisella orientalis LADL 07-285A LADL--07-285A [CP006875]
473274
473349
+
Val
TAC
[Ensembl]
¡û
>W1810608481
QGTJ01000007
Gammaproteobacteria
Plasticicumulans acidivorans DSM 23606 [QGTJ]
41972
42047
+
Val
TAC
[ENA]
¡û
>C151087365
CP011921
Gammaproteobacteria
Francisella orientalis FNO12 [CP011921]
413478
413553
+
Val
TAC
[Ensembl]
¡û
>C151087439
CP011923
Gammaproteobacteria
Francisella orientalis FNO190 [CP011923]
413461
413536
+
Val
TAC
[Ensembl]
¡û
>C121012418
CP003402
Gammaproteobacteria
Francisella orientalis str. Toba 04 [CP003402]
413442
413517
+
Val
TAC
[Ensembl]
¡û
>W1610926030
LTDO01000002
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
476173
476248
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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