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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464676 (30 seq.)
>W1710892469
LNDT01000039
Bdellovibrionota
Bdellovibrionales bacterium Ga0074137 [LNDT]
101898
101973
+
Ala
TGC
[ENA]
¡û
>W1710892748
LNEB01000014
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
776
701
-
Ala
TGC
[ENA]
¡û
>W1711124500
LUKD01000010
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
34881
34956
+
Ala
TGC
[ENA]
¡û
>W1711124509
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
2159864
2159939
+
Ala
TGC
[ENA]
¡û
>W1711124544
LUKF01000014
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
307036
307111
+
Ala
TGC
[ENA]
¡û
>C001963
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
819230
819305
+
Ala
TGC
[Ensembl]
¡û
>WENV181170799
OEIV010090448
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
157
82
-
Ala
TGC
[ENA]
¢þ
>WENV181416717
OGCL01132043
[OGCL] hot springs metagenome; Hot spring water
237
162
-
Ala
TGC
[ENA]
¢þ
>WENV181851322
OGWE01023408
[OGWE] freshwater metagenome; freshwater
249
324
+
Ala
TGC
[ENA]
¢þ
>WENV181856837
OGWN01019838
[OGWN] freshwater metagenome; freshwater
502
427
-
Ala
TGC
[ENA]
¢þ
>WENV170574241
FLYM01017151
[FLYM] hot springs metagenome; Sediment
2787
2862
+
Ala
TGC
[ENA]
¢þ
>WENV170576979
FRDC01002511
[FRDC] freshwater metagenome; water
59060
59135
+
Ala
TGC
[ENA]
¢þ
>WENV170708867
LNFM01000009
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
415621
415696
+
Ala
TGC
[ENA]
¢þ
>WENV170712512
LNFM01014230
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2334
2259
-
Ala
TGC
[ENA]
¢þ
>WENV170714760
LNFM01099404
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
200
275
+
Ala
TGC
[ENA]
¢þ
>WENV170957256
MJUR01005135
[MJUR] soil metagenome; viral particles from soil sample MTG22
20
95
+
Ala
TGC
[ENA]
¢þ
>C181047783
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
2953235
2953160
-
Ala
TGC
-
¡û
>C191037139
CP025734
Bdellovibrionota
Bdellovibrio sp. qaytius [CP025734]
663055
663130
+
Ala
TGC
-
¡û
>W1910698862
MEPU01000006
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29 [MEPU]
22884
22809
-
Ala
TGC
[ENA]
¡û
>C151003352
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
608081
608156
+
Ala
TGC
[Ensembl]
¡û
>C151031136
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
3830192
3830267
+
Ala
TGC
[Ensembl]
¡û
>C151087477
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
808080
808155
+
Ala
TGC
-
¡û
>W1511399657
JTEV01000002
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
37215
37290
+
Ala
TGC
[ENA]
¡û
>C131001651
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
842045
842120
+
Ala
TGC
[Ensembl]
¡û
>C131004026
CP003537
Bdellovibrionota
Pseudobdellovibrio exovorus JSS [CP003537]
751400
751475
+
Ala
TGC
[Ensembl]
¡û
>W1610752735
LNDT01000039
Bdellovibrionota
Bdellovibrionales bacterium Ga0074137 [LNDT]
101898
101973
+
Ala
TGC
[ENA]
¡û
>W1610753014
LNEB01000014
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
776
701
-
Ala
TGC
[ENA]
¡û
>W1610935440
LUKD01000010
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
34881
34956
+
Ala
TGC
[ENA]
¡û
>W1610935449
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
2159864
2159939
+
Ala
TGC
[ENA]
¡û
>W1610935484
LUKF01000014
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
307036
307111
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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