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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464790 (14 seq.)
>C171046542
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
14026072
14026145
+
Ala
TGC
-
¡û
>WENV180027713
FTIZ01038827
[FTIZ] metagenome; soil
599
526
-
Ala
TGC
[ENA]
¢þ
>WENV180029273
FTJI01358863
[FTJI] metagenome; soil
288
361
+
Ala
TGC
[ENA]
¢þ
>WENV180034804
FTKR01385236
[FTKR] metagenome; soil
288
361
+
Ala
TGC
[ENA]
¢þ
>WENV180258979
OBEQ011061730
[OBEQ] groundwater metagenome; groundwater
470
395
-
Ala
TGC
[ENA]
¢þ
>C08008917
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
3487797
3487872
+
Ala
TGC
[Ensembl]
¡û
>C181012486
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
3904101
3904175
+
Ala
TGC
-
¡û
>C191010016
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
2993734
2993808
+
Ala
TGC
-
¡û
>C191010067
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
4327571
4327645
+
Ala
TGC
-
¡û
>C131010751
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
4324766
4324841
+
Ala
TGC
[Ensembl]
¡û
>W1610520705
JEMD01002438
Myxococcota
Sorangium cellulosum [JEMD]
200
125
-
Ala
TGC
[ENA]
¡û
>W1610520741
JEME01001978
Myxococcota
Sorangium cellulosum [JEME]
79
154
+
Ala
TGC
[ENA]
¡û
>W1710616183
JEMD01002438
Myxococcota
Sorangium cellulosum [JEMD]
200
125
-
Ala
TGC
[ENA]
¡û
>W1710616219
JEME01001978
Myxococcota
Sorangium cellulosum [JEME]
79
154
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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