This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464796 (29 seq.)
>C171046557
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
10442979
10442906
-
Lys
CTT
-
¡û
>WENV180015891
FSTQ01000080
[FSTQ] metagenome; soil
12906
12832
-
Lys
CTT
[ENA]
¢þ
>WENV180019776
FTCO01000078
[FTCO] metagenome; soil
13409
13483
+
Lys
CTT
[ENA]
¢þ
>WENV180027930
FTIZ01290425
[FTIZ] metagenome; soil
401
327
-
Lys
CTT
[ENA]
¢þ
>WENV180028964
FTJI01000310
[FTJI] metagenome; soil
3532
3606
+
Lys
CTT
[ENA]
¢þ
>WENV180034489
FTKR01000306
[FTKR] metagenome; soil
3532
3606
+
Lys
CTT
[ENA]
¢þ
>C08008930
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
11288640
11288568
-
Lys
CTT
[Ensembl]
¡û
>C181012495
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
13349799
13349874
+
Lys
CTT
-
¡û
>C191010027
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
9834277
9834202
-
Lys
CTT
-
¡û
>C191010080
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
13050680
13050606
-
Lys
CTT
-
¡û
>W1610048972
BBEO01001777
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
858
933
+
Lys
CTT
[ENA]
¡û
>C131010764
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
13280112
13280037
-
Lys
CTT
[Ensembl]
¡û
>W1610520372
JELX01000478
Myxococcota
Sorangium cellulosum [JELX]
372
447
+
Lys
CTT
[ENA]
¡û
>W1610520441
JELY01002094
Myxococcota
Sorangium cellulosum [JELY]
7480
7405
-
Lys
CTT
[ENA]
¡û
>W1610520473
JELZ01000554
Myxococcota
Sorangium cellulosum [JELZ]
4836
4761
-
Lys
CTT
[ENA]
¡û
>W1610520536
JEMA01000738
Myxococcota
Sorangium cellulosum [JEMA]
1428
1503
+
Lys
CTT
[ENA]
¡û
>W1610520569
JEMB01001264
Myxococcota
Sorangium cellulosum [JEMB]
310
385
+
Lys
CTT
[ENA]
¡û
>W1610520652
JEMC01003348
Myxococcota
Sorangium cellulosum [JEMC]
349
424
+
Lys
CTT
[ENA]
¡û
>W1610520676
JEMD01001435
Myxococcota
Sorangium cellulosum [JEMD]
546
621
+
Lys
CTT
[ENA]
¡û
>W1610520717
JEME01000757
Myxococcota
Sorangium cellulosum [JEME]
1335
1260
-
Lys
CTT
[ENA]
¡û
>W1710045444
BBEO01001777
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
858
933
+
Lys
CTT
[ENA]
¡û
>W1710615850
JELX01000478
Myxococcota
Sorangium cellulosum [JELX]
372
447
+
Lys
CTT
[ENA]
¡û
>W1710615919
JELY01002094
Myxococcota
Sorangium cellulosum [JELY]
7480
7405
-
Lys
CTT
[ENA]
¡û
>W1710615951
JELZ01000554
Myxococcota
Sorangium cellulosum [JELZ]
4836
4761
-
Lys
CTT
[ENA]
¡û
>W1710616014
JEMA01000738
Myxococcota
Sorangium cellulosum [JEMA]
1428
1503
+
Lys
CTT
[ENA]
¡û
>W1710616047
JEMB01001264
Myxococcota
Sorangium cellulosum [JEMB]
310
385
+
Lys
CTT
[ENA]
¡û
>W1710616130
JEMC01003348
Myxococcota
Sorangium cellulosum [JEMC]
349
424
+
Lys
CTT
[ENA]
¡û
>W1710616154
JEMD01001435
Myxococcota
Sorangium cellulosum [JEMD]
546
621
+
Lys
CTT
[ENA]
¡û
>W1710616195
JEME01000757
Myxococcota
Sorangium cellulosum [JEME]
1335
1260
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK