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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.464802 (93 seq.)
>W1710860826
LMDE01000011
Actinomycetota
Nocardioides sp. Root122 [LMDE]
10627
10554
-
Asn
GTT
[ENA]
¡û
>W1710861700
LMDV01000002
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
10327
10252
-
Asn
GTT
[ENA]
¡û
>W1710867720
LMIN01000002
Actinomycetota
Nocardioides sp. Root224 [LMIN]
10328
10253
-
Asn
GTT
[ENA]
¡û
>W1710880210
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
809671
809744
+
Asn
GTT
[ENA]
¡û
>W1710880663
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
29376
29301
-
Asn
GTT
[ENA]
¡û
>W1710880718
LMSN01000017
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
23406
23331
-
Asn
GTT
[ENA]
¡û
>W1710881089
LMSU01000005
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
10432
10357
-
Asn
GTT
[ENA]
¡û
>W1711126700
LUPF01000024
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
99542
99615
+
Asn
GTT
[ENA]
¡û
>W1711126768
LUPH01000072
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
16588
16661
+
Asn
GTT
[ENA]
¡û
>W1711126807
LUPI01000014
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
11605
11532
-
Asn
GTT
[ENA]
¡û
>W1711126867
LUPJ01000209
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
1348
1421
+
Asn
GTT
[ENA]
¡û
>W1711126890
LUPK01000032
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
10704
10631
-
Asn
GTT
[ENA]
¡û
>W1711126923
LUPL01000009
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
12568
12495
-
Asn
GTT
[ENA]
¡û
>W1711126968
LUPM01000039
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
6554
6481
-
Asn
GTT
[ENA]
¡û
>W1711127037
LUPO01000002
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
10704
10631
-
Asn
GTT
[ENA]
¡û
>W1711127120
LUPQ01000026
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
9203
9276
+
Asn
GTT
[ENA]
¡û
>W1712084131
NHQT01000006
Actinomycetota
Nocardioides sp. XL1 [NHQT]
32297
32224
-
Asn
GTT
[ENA]
¡û
>W131224358
AUCS01000008
Actinomycetota
Dermatophilus congolensis DSM 44180 = NBRC 105199 [AUCS]
130524
130599
+
Asn
GTT
[ENA]
¡û
>W131229421
AUGU01000011
Actinomycetota
Nocardioides insulae DSM 17944 [AUGU]
520271
520196
-
Asn
GTT
[ENA]
¡û
>C015194
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
2081097
2081169
+
Asn
GTT
[Ensembl]
¡û
>WENV180000010
CZKA01000007
[CZKA] metagenome; liquid mineral medium
18367
18440
+
Asn
GTT
[ENA]
¢þ
>WENV180000084
CZKB01000019
[CZKB] metagenome; liquid mineral medium
30153
30080
-
Asn
GTT
[ENA]
¢þ
>WENV180019299
FTBU01000484
[FTBU] metagenome; soil
1206
1131
-
Asn
GTT
[ENA]
¢þ
>WENV180691160
OCZS010068956
[OCZS] soil metagenome; soil
610
683
+
Asn
GTT
[ENA]
¢þ
>WENV170552302
CXWJ01053862
[CXWJ] wastewater metagenome; activated sludge
3820
3745
-
Asn
GTT
[ENA]
¢þ
>WENV170727905
LULE01004220
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
5078
5005
-
Asn
GTT
[ENA]
¢þ
>WENV170728624
LULF01000003
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
10704
10631
-
Asn
GTT
[ENA]
¢þ
>WENV170731213
LULH01041034
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
58
131
+
Asn
GTT
[ENA]
¢þ
>WENV170731799
LULI01004243
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
6554
6481
-
Asn
GTT
[ENA]
¢þ
>WENV170733541
LULJ01027073
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
84
11
-
Asn
GTT
[ENA]
¢þ
>WENV170733772
LULK01000070
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
12454
12381
-
Asn
GTT
[ENA]
¢þ
>WENV170735087
LULL01000002
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
10704
10631
-
Asn
GTT
[ENA]
¢þ
>WENV170736718
LULM01021694
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
366
293
-
Asn
GTT
[ENA]
¢þ
>WENV170737059
LULN01001545
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
1348
1421
+
Asn
GTT
[ENA]
¢þ
>WENV170737468
LULO01000189
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
11605
11532
-
Asn
GTT
[ENA]
¢þ
>WENV170739350
LULQ01000374
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
16588
16661
+
Asn
GTT
[ENA]
¢þ
>WENV170740502
LULR01013522
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
427
500
+
Asn
GTT
[ENA]
¢þ
>WENV170742395
LULU01016559
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
306
233
-
Asn
GTT
[ENA]
¢þ
>WENV170743458
LULW01000116
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
10704
10631
-
Asn
GTT
[ENA]
¢þ
>WENV170743744
LULW01002764
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
3391
3318
-
Asn
GTT
[ENA]
¢þ
>WENV170758965
LUMS01000626
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
6469
6542
+
Asn
GTT
[ENA]
¢þ
>WENV170760763
LUMU01000068
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
9203
9276
+
Asn
GTT
[ENA]
¢þ
>WENV170761872
LUMW01000032
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
50956
51029
+
Asn
GTT
[ENA]
¢þ
>C181119583
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
2433637
2433564
-
Asn
GTT
-
¡û
>C181225136
LT906453
Actinomycetota
Dermatophilus congolensis NCTC13039 [LT906453]
1753236
1753309
+
Asn
GTT
-
¡û
>C191104205
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
2696434
2696361
-
Asn
GTT
-
¡û
>C191132684
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
1225465
1225538
+
Asn
GTT
-
¡û
>C191132685
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
1241658
1241731
+
Asn
GTT
-
¡û
>C191158873
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
955033
954958
-
Asn
GTT
-
¡û
>C191159457
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
3083639
3083714
+
Asn
GTT
-
¡û
>W141564535
JIAV01000021
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
214939
215012
+
Asn
GTT
[ENA]
¡û
>W09103272
AAJB01000038
Actinomycetota
Nocardioides sp. JS614 [AAJB]
33023
33096
+
Asn
GTT
[ENA]
¡û
>W141775208
JOJN01000005
Actinomycetota
Nocardioides aequoreus [JOJN]
165074
164999
-
Asn
GTT
[ENA]
¡û
>W1910141215
BIFF01000001
Actinomycetota
Nocardioides sp. LS1 [BIFF]
510422
510497
+
Asn
GTT
[ENA]
¡û
>W1911672127
QGDD01000008
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
47179
47104
-
Asn
GTT
[ENA]
¡û
>W1911768168
QXGH01000031
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
1818
1745
-
Asn
GTT
[ENA]
¡û
>W1911823573
QZVR01000014
Actinomycetota
Nocardioides ferulae SZ4R5S7 [QZVR]
55828
55903
+
Asn
GTT
[ENA]
¡û
>W1810173600
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
3306967
3307040
+
Asn
GTT
[ENA]
¡û
>W1810201572
POAG01000011
Actinomycetota
Nocardioides sp. 616 [POAG]
12506
12433
-
Asn
GTT
[ENA]
¡û
>W1810254950
PQHZ01000080
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
3411
3338
-
Asn
GTT
[ENA]
¡û
>W1810427523
PYXZ01000006
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
302282
302356
+
Asn
GTT
[ENA]
¡û
>W1810462685
PZYY01000015
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
42300
42375
+
Asn
GTT
[ENA]
¡û
>W1810462712
PZYZ01000002
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
866052
866127
+
Asn
GTT
[ENA]
¡û
>W1810577894
QEOO01000042
Actinomycetota
Nocardioides speluncae YIM ART13 [QEOO]
124339
124266
-
Asn
GTT
[ENA]
¡û
>W1810626196
QHKX01000003
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
18641
18567
-
Asn
GTT
[ENA]
¡û
>W1810626254
QHKZ01000001
Actinomycetota
Nocardioides daejeonensis MJ31 [QHKZ]
354584
354657
+
Asn
GTT
[ENA]
¡û
>W1810756437
QPFD01000001
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
8348
8275
-
Asn
GTT
[ENA]
¡û
>W1510071717
CDGT01000023
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
612540
612467
-
Asn
GTT
[ENA]
¡û
>W1511568123
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
2005634
2005558
-
Asn
GTT
[ENA]
¡û
>W121124414
BAFE01000027
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
85812
85887
+
Asn
GTT
[ENA]
¡û
>W1610050514
BBFY01000128
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
3594
3521
-
Asn
GTT
[ENA]
¡û
>W1610051387
BBGV01000202
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
137
212
+
Asn
GTT
[ENA]
¡û
>W1610068479
BCRJ01000028
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
58068
58141
+
Asn
GTT
[ENA]
¡û
>W1610723172
LMDE01000011
Actinomycetota
Nocardioides sp. Root122 [LMDE]
10627
10554
-
Asn
GTT
[ENA]
¡û
>W1610724046
LMDV01000002
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
10327
10252
-
Asn
GTT
[ENA]
¡û
>W1610730066
LMIN01000002
Actinomycetota
Nocardioides sp. Root224 [LMIN]
10328
10253
-
Asn
GTT
[ENA]
¡û
>W1610742556
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
809671
809744
+
Asn
GTT
[ENA]
¡û
>W1610743009
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
29376
29301
-
Asn
GTT
[ENA]
¡û
>W1610743064
LMSN01000017
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
23406
23331
-
Asn
GTT
[ENA]
¡û
>W1610743435
LMSU01000005
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
10432
10357
-
Asn
GTT
[ENA]
¡û
>W1610937814
LUPF01000024
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
99542
99615
+
Asn
GTT
[ENA]
¡û
>W1610937882
LUPH01000072
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
16588
16661
+
Asn
GTT
[ENA]
¡û
>W1610937921
LUPI01000014
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
11605
11532
-
Asn
GTT
[ENA]
¡û
>W1610937981
LUPJ01000209
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
1348
1421
+
Asn
GTT
[ENA]
¡û
>W1610938004
LUPK01000032
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
10704
10631
-
Asn
GTT
[ENA]
¡û
>W1610938037
LUPL01000009
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
12568
12495
-
Asn
GTT
[ENA]
¡û
>W1610938082
LUPM01000039
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
6554
6481
-
Asn
GTT
[ENA]
¡û
>W1610938151
LUPO01000002
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
10704
10631
-
Asn
GTT
[ENA]
¡û
>W1610938234
LUPQ01000026
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
9203
9276
+
Asn
GTT
[ENA]
¡û
>W1710046913
BBFY01000128
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
3594
3521
-
Asn
GTT
[ENA]
¡û
>W1710047765
BBGV01000202
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
137
212
+
Asn
GTT
[ENA]
¡û
>W1710065852
BCRJ01000028
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
58068
58141
+
Asn
GTT
[ENA]
¡û
>W1710556509
FOKG01000007
Actinomycetota
Amycolatopsis marina [FOKG]
274050
274123
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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