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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465521 (45 seq.)
>W1710860324
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
1882629
1882704
+
Ala
CGC
[ENA]
¡û
>W1710867794
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
491438
491513
+
Ala
CGC
[ENA]
¡û
>W1710876134
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
913646
913721
+
Ala
CGC
[ENA]
¡û
>W1710878835
LMRH01000001
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
776758
776833
+
Ala
CGC
[ENA]
¡û
>W1710921176
LNZG01000026
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
1842
1767
-
Ala
CGC
[ENA]
¡û
>W1711505310
MKVJ01000022
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
158517
158592
+
Ala
CGC
[ENA]
¡û
>W1711961755
NCSR01000012
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
114569
114494
-
Ala
CGC
[ENA]
¡û
>W131162277
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
658786
658711
-
Ala
CGC
[ENA]
¡û
>W131184651
ARTB01000004
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
70065
70140
+
Ala
CGC
[ENA]
¡û
>C012812
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
603549
603624
+
Ala
CGC
[Ensembl]
¡û
>WENV180016202
FSUF01000560
[FSUF] metagenome; soil
19103
19028
-
Ala
CGC
[ENA]
¢þ
>WENV180016222
FSUF01001471
[FSUF] metagenome; soil
9487
9412
-
Ala
CGC
[ENA]
¢þ
>WENV180016511
FSVG01001327
[FSVG] metagenome; soil
5598
5525
-
Ala
CGC
[ENA]
¢þ
>WENV180017373
FSWU01000370
[FSWU] metagenome; soil
5810
5736
-
Ala
CGC
[ENA]
¢þ
>WENV180018342
FSYX01000077
[FSYX] metagenome; soil
2524
2597
+
Ala
CGC
[ENA]
¢þ
>WENV180025995
FTIR01002044
[FTIR] metagenome; soil
2036
1961
-
Ala
CGC
[ENA]
¢þ
>WENV181168847
OEIU01839299
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
99
24
-
Ala
CGC
[ENA]
¢þ
>W141146505
AWVQ01000308
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
290
365
+
Ala
CGC
[ENA]
¡û
>W141188416
AYMR01000018
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
163149
163224
+
Ala
CGC
[ENA]
¡û
>WENV183697935
OUNK010421619
[OUNK] metagenome; soil
4812
4738
-
Ala
CGC
[ENA]
¢þ
>C141007908
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
1976323
1976248
-
Ala
CGC
[Ensembl]
¡û
>W1911502886
OEQC01000003
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
820442
820515
+
Ala
CGC
[ENA]
¡û
>W1810058226
PDJH01000001
Actinomycetota
Flavimobilis soli DSM 21574 [PDJH]
2440685
2440759
+
Ala
CGC
[ENA]
¡û
>W1810167490
PJIN01000003
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
606015
606090
+
Ala
CGC
[ENA]
¡û
>W1810167520
PJIO01000001
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
631005
631078
+
Ala
CGC
[ENA]
¡û
>W1810169236
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
2004818
2004893
+
Ala
CGC
[ENA]
¡û
>W1810627310
QHLZ01000003
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
340469
340543
+
Ala
CGC
[ENA]
¡û
>W1810657149
QJHB01000003
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
49686
49761
+
Ala
CGC
[ENA]
¡û
>W1810684442
QKXI01000002
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
159329
159403
+
Ala
CGC
[ENA]
¡û
>C151029509
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
2095733
2095657
-
Ala
CGC
[Ensembl]
¡û
>W10100675
ABUN01000009
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
31210
31285
+
Ala
CGC
[ENA]
¡û
>C10111735
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
3400628
3400553
-
Ala
CGC
[Ensembl]
¡û
>W11100675
ABUN01000009
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
31210
31285
+
Ala
CGC
[ENA]
¡û
>W1511691450
LFYU01002338
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
209
284
+
Ala
CGC
[ENA]
¡û
>C161052838
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
1296167
1296242
+
Ala
CGC
[Ensembl]
¡û
>C161076872
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
1216844
1216769
-
Ala
CGC
[Ensembl]
¡û
>W1610069029
BCRT01000021
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
266371
266296
-
Ala
CGC
[ENA]
¡û
>W1610722670
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
1882629
1882704
+
Ala
CGC
[ENA]
¡û
>W1610730140
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
491438
491513
+
Ala
CGC
[ENA]
¡û
>W1610738480
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
913646
913721
+
Ala
CGC
[ENA]
¡û
>W1610741181
LMRH01000001
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
776758
776833
+
Ala
CGC
[ENA]
¡û
>W1710066402
BCRT01000021
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
266371
266296
-
Ala
CGC
[ENA]
¡û
>W1710540804
FNXD01000011
Actinomycetota
Leifsonia sp. CL154 [FNXD]
108345
108270
-
Ala
CGC
[ENA]
¡û
>W1710561236
FONZ01000003
Actinomycetota
Flavimobilis marinus [FONZ]
15517
15442
-
Ala
CGC
[ENA]
¡û
>W1710568278
FOTM01000011
Actinomycetota
Leifsonia sp. CL147 [FOTM]
108204
108129
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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