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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465576 (64 seq.)
>W1711050382
LRRM01000003
Actinomycetota
Nocardia brasiliensis [LRRM]
355086
355013
-
His
GTG
[ENA]
¡û
>W1711276604
LZIG01000223
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
1028
1101
+
His
GTG
[ENA]
¡û
>W1711281718
LZMK01000154
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
34505
34578
+
His
GTG
[ENA]
¡û
>W1711281752
LZML01000023
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
68149
68222
+
His
GTG
[ENA]
¡û
>W1711285869
LZSP01000238
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
38924
38851
-
His
GTG
[ENA]
¡û
>C171072556
CP018082
Actinomycetota
Nocardia mangyaensis Y48 [CP018082]
1390663
1390588
-
His
GTG
-
¡û
>W131087833
AODO01000001
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
254607
254532
-
His
GTG
[ENA]
¡û
>WENV180032039
FTJU01017203
[FTJU] metagenome; soil
1211
1138
-
His
GTG
[ENA]
¢þ
>W141231361
BATZ01000020
Actinomycetota
Nocardia otitidiscaviarum IFM 11049 [BATZ]
236502
236427
-
His
GTG
[ENA]
¡û
>W141231412
BAUA01000044
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
144112
144039
-
His
GTG
[ENA]
¡û
>C181057466
CP022088
Actinomycetota
Nocardia brasiliensis FDAARGOS_352 [CP022088]
4700385
4700458
+
His
GTG
-
¡û
>C181153073
CP027433
Actinomycetota
Gordonia iterans Co17 [CP027433]
1834890
1834816
-
His
GTG
-
¡û
>C191065482
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
6399978
6399905
-
His
GTG
-
¡û
>W141774710
JOJF01000027
Actinomycetota
Nocardia sp. NRRL WC-3656 [JOJF]
7647
7574
-
His
GTG
[ENA]
¡û
>W1910897040
NGAF01000001
Actinomycetota
Nocardia cerradoensis CNM20130759 [NGAF]
132061
131988
-
His
GTG
[ENA]
¡û
>W1911532668
OIFR01000007
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
243206
243133
-
His
GTG
[ENA]
¡û
>W1810282379
PSYZ01000018
Actinomycetota
Nocardia nova ATCC 10905 [PSYZ]
30695
30622
-
His
GTG
[ENA]
¡û
>W1810282427
PSZA01000022
Actinomycetota
Nocardia nova MDA5529 [PSZA]
67769
67842
+
His
GTG
[ENA]
¡û
>W1810282469
PSZB01000014
Actinomycetota
Nocardia nova MDA3397 [PSZB]
141072
141145
+
His
GTG
[ENA]
¡û
>W1810282571
PSZD01000018
Actinomycetota
Nocardia nova BAA2227 [PSZD]
10278
10205
-
His
GTG
[ENA]
¡û
>W1810402941
PYHS01000028
Actinomycetota
Nocardia nova ATCC 33727 [PYHS]
37442
37515
+
His
GTG
[ENA]
¡û
>W1810402952
PYHT01000004
Actinomycetota
Nocardia sp. MDA0666 [PYHT]
111704
111777
+
His
GTG
[ENA]
¡û
>W1810659654
QJKF01000011
Actinomycetota
Nocardia tenerifensis DSM 44704 [QJKF]
84886
84811
-
His
GTG
[ENA]
¡û
>C151013341
CP006850
Actinomycetota
Nocardia nova SH22a [CP006850]
6664043
6664116
+
His
GTG
[Ensembl]
¡û
>W1510649783
CVQP01000001
Actinomycetota
Rhodococcus sp. RD6.2 [CVQP]
57166
57091
-
His
GTG
[ENA]
¡û
>W1511221563
JNFP01000014
Actinomycetota
Nocardia vulneris W9851 [JNFP]
144116
144189
+
His
GTG
[ENA]
¡û
>W121055516
AIHV01000004
Actinomycetota
Nocardia brasiliensis ATCC 700358 [AIHV]
386618
386545
-
His
GTG
[ENA]
¡û
>W121124930
BAFQ01000053
Actinomycetota
Nocardia aobensis NBRC 100429 [BAFQ]
23815
23742
-
His
GTG
[ENA]
¡û
>W121125104
BAFT01000128
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
290091
290018
-
His
GTG
[ENA]
¡û
>W121125219
BAFW01000052
Actinomycetota
Nocardia cerradoensis NBRC 101014 [BAFW]
9638
9565
-
His
GTG
[ENA]
¡û
>W121125588
BAGD01000044
Actinomycetota
Nocardia otitidiscaviarum NBRC 14405 [BAGD]
74522
74447
-
His
GTG
[ENA]
¡û
>W121125800
BAGH01000101
Actinomycetota
Nocardia tenerifensis NBRC 101015 [BAGH]
40473
40398
-
His
GTG
[ENA]
¡û
>W1610078346
BDAV01000005
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
572497
572570
+
His
GTG
[ENA]
¡û
>W1610078395
BDAW01000014
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
22728
22655
-
His
GTG
[ENA]
¡û
>W1610078789
BDBD01000024
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
8882
8807
-
His
GTG
[ENA]
¡û
>W1610078829
BDBE01000033
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
102599
102524
-
His
GTG
[ENA]
¡û
>W1610078884
BDBF01000043
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
37703
37776
+
His
GTG
[ENA]
¡û
>W1610079002
BDBI01000005
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
20289
20364
+
His
GTG
[ENA]
¡û
>W1610079179
BDBL01000003
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
124789
124862
+
His
GTG
[ENA]
¡û
>W1610079290
BDBN01000046
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
50085
50012
-
His
GTG
[ENA]
¡û
>W1610079940
BDCA01000001
Actinomycetota
Nocardia vermiculata NBRC 100427 [BDCA]
765092
765165
+
His
GTG
[ENA]
¡û
>W1610080385
BDCI01000004
Actinomycetota
Nocardia vulneris [BDCI]
265719
265792
+
His
GTG
[ENA]
¡û
>W1610080615
BDCM01000014
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
674195
674268
+
His
GTG
[ENA]
¡û
>W1610080673
BDCN01000051
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
945
1018
+
His
GTG
[ENA]
¡û
>C131008869
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
1840103
1840030
-
His
GTG
[Ensembl]
¡û
>W1610891511
LRRM01000003
Actinomycetota
Nocardia brasiliensis [LRRM]
355086
355013
-
His
GTG
[ENA]
¡û
>W1611035889
LZIG01000223
Actinomycetota
Mycobacterium sp. 852002-51759_SCH5129042 [LZIG]
1028
1101
+
His
GTG
[ENA]
¡û
>W1611041003
LZMK01000154
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
34505
34578
+
His
GTG
[ENA]
¡û
>W1611041037
LZML01000023
Actinomycetota
Nocardia sp. 852002-51101_SCH5132738 [LZML]
68149
68222
+
His
GTG
[ENA]
¡û
>W1611043430
LZSP01000238
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
38924
38851
-
His
GTG
[ENA]
¡û
>W1710072256
BCXF01000015
Actinomycetota
Rhodococcus triatomae NBRC 103116 [BCXF]
56851
56776
-
His
GTG
[ENA]
¡û
>W1710076905
BDAV01000005
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
572497
572570
+
His
GTG
[ENA]
¡û
>W1710076954
BDAW01000014
Actinomycetota
Nocardia acidivorans NBRC 108247 [BDAW]
22728
22655
-
His
GTG
[ENA]
¡û
>W1710077348
BDBD01000024
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
8882
8807
-
His
GTG
[ENA]
¡û
>W1710077388
BDBE01000033
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
102599
102524
-
His
GTG
[ENA]
¡û
>W1710077443
BDBF01000043
Actinomycetota
Nocardia elegans NBRC 108235 [BDBF]
37703
37776
+
His
GTG
[ENA]
¡û
>W1710077561
BDBI01000005
Actinomycetota
Nocardia ignorata NBRC 108230 [BDBI]
20289
20364
+
His
GTG
[ENA]
¡û
>W1710077738
BDBL01000003
Actinomycetota
Nocardia kruczakiae NBRC 101016 [BDBL]
124789
124862
+
His
GTG
[ENA]
¡û
>W1710077849
BDBN01000046
Actinomycetota
Nocardia nova NBRC 15556 [BDBN]
50085
50012
-
His
GTG
[ENA]
¡û
>W1710078499
BDCA01000001
Actinomycetota
Nocardia vermiculata NBRC 100427 [BDCA]
765092
765165
+
His
GTG
[ENA]
¡û
>W1710078944
BDCI01000004
Actinomycetota
Nocardia vulneris [BDCI]
265719
265792
+
His
GTG
[ENA]
¡û
>W1710079174
BDCM01000014
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
674195
674268
+
His
GTG
[ENA]
¡û
>W1710079232
BDCN01000051
Actinomycetota
Nocardia violaceofusca NBRC 14427 [BDCN]
945
1018
+
His
GTG
[ENA]
¡û
>W1710517705
FNDN01000002
Actinomycetota
Rhodococcus triatomae [FNDN]
465870
465945
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK