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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465749 (119 seq.)
>W1710927151
LOFG01000012
Gammaproteobacteria
Pseudoalteromonas sp. H103 [LOFG]
5517
5444
-
Cys
GCA
[ENA]
¡û
>W131051955
AMYA01000109
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 [AMYA]
191
264
+
Cys
GCA
[ENA]
¡û
>C171097292
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
3212493
3212566
+
Cys
GCA
-
¡û
>W141086661
AUTJ01000219
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
3363
3290
-
Cys
GCA
[ENA]
¡û
>W141086666
AUTJ01000219
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
2754
2681
-
Cys
GCA
[ENA]
¡û
>W141086861
AUTL01000298
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
4485
4412
-
Cys
GCA
[ENA]
¡û
>W141086949
AUTM01000360
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
11936
12009
+
Cys
GCA
[ENA]
¡û
>W141087166
AUTP01000211
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
24731
24804
+
Cys
GCA
[ENA]
¡û
>W141087171
AUTP01000211
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
25339
25412
+
Cys
GCA
[ENA]
¡û
>W141087239
AUTQ01000083
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
1586
1513
-
Cys
GCA
[ENA]
¡û
>W141087274
AUTQ01000134
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
808
735
-
Cys
GCA
[ENA]
¡û
>W141087279
AUTQ01000134
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
199
126
-
Cys
GCA
[ENA]
¡û
>W141087393
AUTR01000051
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
5349
5276
-
Cys
GCA
[ENA]
¡û
>W141087398
AUTR01000051
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
4741
4668
-
Cys
GCA
[ENA]
¡û
>W141087487
AUTS01000033
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
5349
5276
-
Cys
GCA
[ENA]
¡û
>W141087492
AUTS01000033
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
4741
4668
-
Cys
GCA
[ENA]
¡û
>WENV182565149
OJEG01009247
[OJEG] seawater metagenome; Sea water
244
317
+
Cys
GCA
[ENA]
¡û
>WENV182572898
OJFO01000417
[OJFO] seawater metagenome; Sea water
3009
3082
+
Cys
GCA
[ENA]
¡û
>WENV170025132
BCQL01227415
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
279
352
+
Cys
GCA
[ENA]
¡û
>C181010179
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
2488704
2488631
-
Cys
GCA
-
¡û
>C181010184
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
2488096
2488023
-
Cys
GCA
-
¡û
>C181012595
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
2514749
2514676
-
Cys
GCA
-
¡û
>C191051568
CP027523
Gammaproteobacteria
Pseudoalteromonas carrageenovora KCTC 22325 [CP027523, CP027524]
2275293
2275220
-
Cys
GCA
-
¡û
>W1911203739
NRGZ01000001
Gammaproteobacteria
Pseudoalteromonas sp. JB197 [NRGZ]
1677774
1677701
-
Cys
GCA
[ENA]
¡û
>W1911203744
NRGZ01000001
Gammaproteobacteria
Pseudoalteromonas sp. JB197 [NRGZ]
1677129
1677056
-
Cys
GCA
[ENA]
¡û
>W1810156638
PJBK01000094
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
3417
3344
-
Cys
GCA
[ENA]
¡û
>W1810156643
PJBK01000094
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
2809
2736
-
Cys
GCA
[ENA]
¡û
>W2010587309
JABBCX010000015
Gammaproteobacteria
Pseudoalteromonas arctica NEC-BIFX-0059 [JABBCX]
4957
4884
-
Cys
GCA
[ENA]
¡û
>W2010587314
JABBCX010000015
Gammaproteobacteria
Pseudoalteromonas arctica NEC-BIFX-0059 [JABBCX]
4349
4276
-
Cys
GCA
[ENA]
¡û
>W2010588589
JABCJL010000007
Gammaproteobacteria
Pseudoalteromonas sp. NEC-BIFX-2020_015 [JABCJL]
172999
173072
+
Cys
GCA
[ENA]
¡û
>W2010588594
JABCJL010000007
Gammaproteobacteria
Pseudoalteromonas sp. NEC-BIFX-2020_015 [JABCJL]
173631
173704
+
Cys
GCA
[ENA]
¡û
>W2010592946
JABEPJ010000005
Gammaproteobacteria
Pseudoalteromonas sp. NEC-BIFX-2020_002 [JABEPJ]
10600
10527
-
Cys
GCA
[ENA]
¡û
>W2010592951
JABEPJ010000005
Gammaproteobacteria
Pseudoalteromonas sp. NEC-BIFX-2020_002 [JABEPJ]
9968
9895
-
Cys
GCA
[ENA]
¡û
>W2010691407
JACGWD010000024
Gammaproteobacteria
Pseudoalteromonas sp. 5Ae-yellow [JACGWD]
4303
4230
-
Cys
GCA
[ENA]
¡û
>W2010733873
JACJDO010000032
Gammaproteobacteria
Pseudoalteromonas sp. SR45-4 [JACJDO]
3317
3244
-
Cys
GCA
[ENA]
¡û
>W2010733878
JACJDO010000032
Gammaproteobacteria
Pseudoalteromonas sp. SR45-4 [JACJDO]
2683
2610
-
Cys
GCA
[ENA]
¡û
>W2010736142
JACJEM010000056
Gammaproteobacteria
Pseudoalteromonas sp. SG45-5 [JACJEM]
26419
26492
+
Cys
GCA
[ENA]
¡û
>W2010736706
JACJES010000015
Gammaproteobacteria
Pseudoalteromonas sp. SG44-5 [JACJES]
70647
70720
+
Cys
GCA
[ENA]
¡û
>W2010736711
JACJES010000015
Gammaproteobacteria
Pseudoalteromonas sp. SG44-5 [JACJES]
71281
71354
+
Cys
GCA
[ENA]
¡û
>W2010738074
JACJFG010000042
Gammaproteobacteria
Pseudoalteromonas sp. SG41-6 [JACJFG]
26419
26492
+
Cys
GCA
[ENA]
¡û
>W2011049252
NRGZ01000001
Gammaproteobacteria
Pseudoalteromonas sp. JB197 [NRGZ]
1677774
1677701
-
Cys
GCA
[ENA]
¡û
>W2011049257
NRGZ01000001
Gammaproteobacteria
Pseudoalteromonas sp. JB197 [NRGZ]
1677129
1677056
-
Cys
GCA
[ENA]
¡û
>W2011200861
PNCW01000010
Gammaproteobacteria
Pseudoalteromonas sp. S3178 [PNCW]
47815
47888
+
Cys
GCA
[ENA]
¡û
>W2011837484
UGUD01000001
Gammaproteobacteria
Pseudoalteromonas nigrifaciens NCTC10691 [UGUD]
1215752
1215825
+
Cys
GCA
[ENA]
¡û
>W2011837489
UGUD01000001
Gammaproteobacteria
Pseudoalteromonas nigrifaciens NCTC10691 [UGUD]
1216387
1216460
+
Cys
GCA
[ENA]
¡û
>W2012434380
WTKS01000009
Gammaproteobacteria
c7(2019) [WTKS]
206925
206998
+
Cys
GCA
[ENA]
¡û
>W2012434383
WTKS01000009
Gammaproteobacteria
c7(2019) [WTKS]
207282
207355
+
Cys
GCA
[ENA]
¡û
>W2012434388
WTKS01000009
Gammaproteobacteria
c7(2019) [WTKS]
207891
207964
+
Cys
GCA
[ENA]
¡û
>W2012434470
WTKT01000010
Gammaproteobacteria
Pseudoalteromonas sp. C8 [WTKT]
152186
152259
+
Cys
GCA
[ENA]
¡û
>W2012434473
WTKT01000010
Gammaproteobacteria
Pseudoalteromonas sp. C8 [WTKT]
152556
152629
+
Cys
GCA
[ENA]
¡û
>W2012434476
WTKT01000010
Gammaproteobacteria
Pseudoalteromonas sp. C8 [WTKT]
152898
152971
+
Cys
GCA
[ENA]
¡û
>W2012434646
WTKV01000026
Gammaproteobacteria
Pseudoalteromonas sp. SA25 [WTKV]
3756
3683
-
Cys
GCA
[ENA]
¡û
>W2012434649
WTKV01000026
Gammaproteobacteria
Pseudoalteromonas sp. SA25 [WTKV]
3386
3313
-
Cys
GCA
[ENA]
¡û
>W2012434652
WTKV01000026
Gammaproteobacteria
Pseudoalteromonas sp. SA25 [WTKV]
3043
2970
-
Cys
GCA
[ENA]
¡û
>W2012434730
WTKW01000305
Gammaproteobacteria
Pseudoalteromonas sp. Z1A6 [WTKW]
128
55
-
Cys
GCA
[ENA]
¡û
>W2012434735
WTKW01000347
Gammaproteobacteria
Pseudoalteromonas sp. Z1A6 [WTKW]
3974
3901
-
Cys
GCA
[ENA]
¡û
>W2012434919
WTKY01000024
Gammaproteobacteria
Pseudoalteromonas sp. 31A1 [WTKY]
46000
46073
+
Cys
GCA
[ENA]
¡û
>W2012434924
WTKY01000024
Gammaproteobacteria
Pseudoalteromonas sp. 31A1 [WTKY]
46608
46681
+
Cys
GCA
[ENA]
¡û
>W2012435091
WTLA01000027
Gammaproteobacteria
Pseudoalteromonas sp. Z9A4 [WTLA]
48503
48576
+
Cys
GCA
[ENA]
¡û
>W2012435096
WTLA01000027
Gammaproteobacteria
Pseudoalteromonas sp. Z9A4 [WTLA]
49111
49184
+
Cys
GCA
[ENA]
¡û
>W2012435202
WTLB01000091
Gammaproteobacteria
Pseudoalteromonas sp. Z1A8 [WTLB]
6105
6178
+
Cys
GCA
[ENA]
¡û
>W2012435207
WTLB01000091
Gammaproteobacteria
Pseudoalteromonas sp. Z1A8 [WTLB]
6713
6786
+
Cys
GCA
[ENA]
¡û
>W2012435267
WTLC01000033
Gammaproteobacteria
Pseudoalteromonas sp. Z9A5 [WTLC]
55293
55366
+
Cys
GCA
[ENA]
¡û
>W2012435272
WTLC01000033
Gammaproteobacteria
Pseudoalteromonas sp. Z9A5 [WTLC]
55901
55974
+
Cys
GCA
[ENA]
¡û
>W2110009437
AQGU01000017
Gammaproteobacteria
Pseudoalteromonas aliena SW19 [AQGU]
4990
4917
-
Cys
GCA
[ENA]
¡û
>W2110009719
AQGW01000023
Gammaproteobacteria
Pseudoalteromonas carrageenovora IAM 12662 [AQGW]
602061
602134
+
Cys
GCA
[ENA]
¡û
>W2110397520
JADYWN010000004
Gammaproteobacteria
Pseudoalteromonas sp. NZS127 [JADYWN]
312136
312209
+
Cys
GCA
[ENA]
¡û
>W2110397525
JADYWN010000004
Gammaproteobacteria
Pseudoalteromonas sp. NZS127 [JADYWN]
312770
312843
+
Cys
GCA
[ENA]
¡û
>W2110397528
JADYWN010000004
Gammaproteobacteria
Pseudoalteromonas sp. NZS127 [JADYWN]
313139
313212
+
Cys
GCA
[ENA]
¡û
>W2110397745
JADYWP010000014
Gammaproteobacteria
Pseudoalteromonas sp. NZS11 [JADYWP]
78420
78493
+
Cys
GCA
[ENA]
¡û
>W2110397750
JADYWP010000014
Gammaproteobacteria
Pseudoalteromonas sp. NZS11 [JADYWP]
79028
79101
+
Cys
GCA
[ENA]
¡û
>W2110397753
JADYWP010000014
Gammaproteobacteria
Pseudoalteromonas sp. NZS11 [JADYWP]
79371
79444
+
Cys
GCA
[ENA]
¡û
>W2110397819
JADYWQ010000025
Gammaproteobacteria
Pseudoalteromonas sp. NSLLW24 [JADYWQ]
46251
46324
+
Cys
GCA
[ENA]
¡û
>W2110397869
JADYWR010000015
Gammaproteobacteria
Pseudoalteromonas sp. NGC95 [JADYWR]
108434
108507
+
Cys
GCA
[ENA]
¡û
>W2110397874
JADYWR010000015
Gammaproteobacteria
Pseudoalteromonas sp. NGC95 [JADYWR]
109042
109115
+
Cys
GCA
[ENA]
¡û
>W2110397877
JADYWR010000015
Gammaproteobacteria
Pseudoalteromonas sp. NGC95 [JADYWR]
109385
109458
+
Cys
GCA
[ENA]
¡û
>W2110397983
JADYWS010000037
Gammaproteobacteria
Pseudoalteromonas sp. NZS71 [JADYWS]
32154
32227
+
Cys
GCA
[ENA]
¡û
>W2110398367
JADYXA010000037
Gammaproteobacteria
Pseudoalteromonas sp. SWYJZ98 [JADYXA]
5615
5542
-
Cys
GCA
[ENA]
¡û
>W2110398370
JADYXA010000037
Gammaproteobacteria
Pseudoalteromonas sp. SWYJZ98 [JADYXA]
5245
5172
-
Cys
GCA
[ENA]
¡û
>W2110398375
JADYXA010000037
Gammaproteobacteria
Pseudoalteromonas sp. SWYJZ98 [JADYXA]
4637
4564
-
Cys
GCA
[ENA]
¡û
>W2110398595
JADYXC010000045
Gammaproteobacteria
Pseudoalteromonas sp. SWYJ118 [JADYXC]
6140
6213
+
Cys
GCA
[ENA]
¡û
>W2110398600
JADYXC010000045
Gammaproteobacteria
Pseudoalteromonas sp. SWYJ118 [JADYXC]
6748
6821
+
Cys
GCA
[ENA]
¡û
>W2110398603
JADYXC010000045
Gammaproteobacteria
Pseudoalteromonas sp. SWYJ118 [JADYXC]
7091
7164
+
Cys
GCA
[ENA]
¡û
>W2110398661
JADYXD010000029
Gammaproteobacteria
Pseudoalteromonas sp. SWXJZ10B [JADYXD]
48415
48488
+
Cys
GCA
[ENA]
¡û
>W2110398760
JADYXF010000035
Gammaproteobacteria
Pseudoalteromonas sp. SWXJZ94C [JADYXF]
57266
57339
+
Cys
GCA
[ENA]
¡û
>W2110398816
JADYXG010000010
Gammaproteobacteria
Pseudoalteromonas sp. SCQQ13 [JADYXG]
3190
3117
-
Cys
GCA
[ENA]
¡û
>W2110398821
JADYXG010000010
Gammaproteobacteria
Pseudoalteromonas sp. SCQQ13 [JADYXG]
2551
2478
-
Cys
GCA
[ENA]
¡û
>W2110398986
JADYXI010000006
Gammaproteobacteria
Pseudoalteromonas sp. SWYJZ19 [JADYXI]
257328
257401
+
Cys
GCA
[ENA]
¡û
>W2110398995
JADYXI010000006
Gammaproteobacteria
Pseudoalteromonas sp. SWYJZ19 [JADYXI]
258468
258541
+
Cys
GCA
[ENA]
¡û
>W2110399098
JADYXJ010000008
Gammaproteobacteria
Pseudoalteromonas sp. SWXJ133 [JADYXJ]
173257
173330
+
Cys
GCA
[ENA]
¡û
>W2110399103
JADYXJ010000008
Gammaproteobacteria
Pseudoalteromonas sp. SWXJ133 [JADYXJ]
173865
173938
+
Cys
GCA
[ENA]
¡û
>W2110399106
JADYXJ010000008
Gammaproteobacteria
Pseudoalteromonas sp. SWXJ133 [JADYXJ]
174208
174281
+
Cys
GCA
[ENA]
¡û
>W2110399249
JADYXK010000039
Gammaproteobacteria
Pseudoalteromonas sp. NZS11_1 NGC94 [JADYXK]
4693
4620
-
Cys
GCA
[ENA]
¡û
>W2110399252
JADYXK010000039
Gammaproteobacteria
Pseudoalteromonas sp. NZS11_1 NGC94 [JADYXK]
4336
4263
-
Cys
GCA
[ENA]
¡û
>W2110399257
JADYXK010000039
Gammaproteobacteria
Pseudoalteromonas sp. NZS11_1 NGC94 [JADYXK]
3728
3655
-
Cys
GCA
[ENA]
¡û
>W2110399262
JADYXK010000039
Gammaproteobacteria
Pseudoalteromonas sp. NZS11_1 NGC94 [JADYXK]
3120
3047
-
Cys
GCA
[ENA]
¡û
>W2110399330
JADYXL010000009
Gammaproteobacteria
Pseudoalteromonas sp. NZS37 [JADYXL]
158836
158909
+
Cys
GCA
[ENA]
¡û
>W2110399337
JADYXL010000009
Gammaproteobacteria
Pseudoalteromonas sp. NZS37 [JADYXL]
159710
159783
+
Cys
GCA
[ENA]
¡û
>W2110399559
JADYXO010000022
Gammaproteobacteria
Pseudoalteromonas sp. NZS127_1 SWN125 [JADYXO]
442
369
-
Cys
GCA
[ENA]
¡û
>W2110766489
RRYZ01000149
Gammaproteobacteria
Pseudoalteromonas nigrifaciens FME53 [RRYZ]
3115
3042
-
Cys
GCA
[ENA]
¡û
>W2110766492
RRYZ01000149
Gammaproteobacteria
Pseudoalteromonas nigrifaciens FME53 [RRYZ]
2747
2674
-
Cys
GCA
[ENA]
¡û
>W2130012753
JABUZB010000137
Gammaproteobacteria
Pseudoalteromonas nigrifaciens FME68 [JABUZB]
202
129
-
Cys
GCA
[ENA]
¡û
>W2130024879
JADYXN010000066
Gammaproteobacteria
Pseudoalteromonas sp. NZS100_1 SWXJz11c [JADYXN]
96
169
+
Cys
GCA
[ENA]
¡û
>W1511518595
JXYD01000034
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
2782
2709
-
Cys
GCA
[ENA]
¡û
>C161031187
CP011034
Gammaproteobacteria
Pseudoalteromonas translucida KMM 520 [CP011034, CP011035]
2196026
2195953
-
Cys
GCA
[Ensembl]
¡û
>C161031194
CP011034
Gammaproteobacteria
Pseudoalteromonas translucida KMM 520 [CP011034, CP011035]
2195115
2195042
-
Cys
GCA
[Ensembl]
¡û
>C161051950
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
1479574
1479647
+
Cys
GCA
-
¡û
>W121123200
BADV01000102
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
44986
45059
+
Cys
GCA
[ENA]
¡û
>W121123210
BADV01000119
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
31
104
+
Cys
GCA
[ENA]
¡û
>W1610620879
LHPH01000024
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
66030
66103
+
Cys
GCA
[ENA]
¡û
>W1610620884
LHPH01000024
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
66662
66735
+
Cys
GCA
[ENA]
¡û
>W1610635595
LITL01000016
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
91072
91145
+
Cys
GCA
[ENA]
¡û
>W1610635600
LITL01000016
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
91704
91777
+
Cys
GCA
[ENA]
¡û
>W1610784693
LOFG01000012
Gammaproteobacteria
Pseudoalteromonas sp. H103 [LOFG]
5517
5444
-
Cys
GCA
[ENA]
¡û
>WENV078368
AAGA01002207
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
776
851
+
Cys
GCA
[ENA]
>W1710748746
LHPH01000024
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
66030
66103
+
Cys
GCA
[ENA]
¡û
>W1710748751
LHPH01000024
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
66662
66735
+
Cys
GCA
[ENA]
¡û
>W1710770223
LITL01000016
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
91072
91145
+
Cys
GCA
[ENA]
¡û
>W1710770228
LITL01000016
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
91704
91777
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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