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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465840 (25 seq.)
>W1710776542
LIZW01000011
Gammaproteobacteria
Coxiella sp. DG_40 [LIZW]
166855
166784
-
Cys
GCA
[ENA]
¡û
>W1710893047
LNEJ01000024
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0074134 [LNEJ]
7295
7222
-
Cys
GCA
[ENA]
¡û
>W131163187
AQZO01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
573034
572961
-
Cys
GCA
[ENA]
¡û
>W1711414021
MGXK01000118
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_51_14 [MGXK]
596
523
-
Cys
GCA
[ENA]
¡û
>W1711414035
MGXL01000047
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_57_12 [MGXL]
3402
3329
-
Cys
GCA
[ENA]
¡û
>W1711767979
MVBK01000102
Gammaproteobacteria
Thioalkalivibrio denitrificans [MVBK]
5366
5439
+
Cys
GCA
[ENA]
¡û
>WENV180027160
FTIX01000029
[FTIX] metagenome; soil
20423
20350
-
Cys
GCA
[ENA]
¡û
>WENV180295764
OBIZ01303960
[OBIZ] soil metagenome; soil
208
135
-
Cys
GCA
[ENA]
¡û
>W08011072
ABSG01000015
Gammaproteobacteria
Nitrosococcus oceani C-27 [ABSG]
23006
22936
-
Cys
GCA
[ENA]
¡û
>WENV170655675
JTFN01056771
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
353
426
+
Cys
GCA
[ENA]
¡û
>WENV170701248
LKGT01005713
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
2576
2649
+
Cys
GCA
[ENA]
¡û
>WENV170701655
LKGT01012245
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
1568
1495
-
Cys
GCA
[ENA]
¡û
>C181000524
AP014836
Gammaproteobacteria
Candidatus Nitrosoglobus terrae TAO100 [AP014836]
1132985
1132912
-
Cys
GCA
-
¡û
>C191157631
CP038033
Gammaproteobacteria
Nitrosococcus wardiae D1FHS [CP038033]
2810855
2810928
+
Cys
GCA
-
¡û
>W09113253
ABYM01000009
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
4254
4181
-
Cys
GCA
[ENA]
¡û
>W141822420
JQSG01000001
Gammaproteobacteria
Acidihalobacter prosperus [JQSG]
150164
150091
-
Cys
GCA
[ENA]
¡û
>C09110623
CP001339
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGr7 HL-EbGR7 [CP001339]
2031808
2031735
-
Cys
GCA
[Ensembl]
¡û
>W1910729249
MGYI01000021
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_9 [MGYI]
7728
7658
-
Cys
GCA
[ENA]
¡û
>W1910729507
MGYQ01000090
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_52_10 [MGYQ]
6295
6368
+
Cys
GCA
[ENA]
¡û
>C151016167
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
1613779
1613852
+
Cys
GCA
[Ensembl]
¡û
>W2010862678
MGYI01000021
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_9 [MGYI]
7728
7658
-
Cys
GCA
[ENA]
¡û
>W2010862937
MGYQ01000090
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_52_10 [MGYQ]
6295
6368
+
Cys
GCA
[ENA]
¡û
>W2010862958
MGYR01000136
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_56_15 [MGYR]
5310
5240
-
Cys
GCA
[ENA]
¡û
>C201310927
LR699119
Gammaproteobacteria
Aquicella siphonis SGT-108 [LR699119, LR699120]
1230303
1230232
-
Cys
GCA
-
¡û
>W1610640648
LIZW01000011
Gammaproteobacteria
Coxiella sp. DG_40 [LIZW]
166855
166784
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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