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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.466245 (113 seq.)
>W131225769
AUDW01000002
Bacillota
Gemella cuniculi DSM 15828 [AUDW]
173942
173869
-
Cys
GCA
[ENA]
¡û
>WENV180008753
FLSB01126336
[FLSB] metagenome; saliva
15477
15550
+
Cys
GCA
[ENA]
¡û
>WENV180009046
FLSB01294649
[FLSB] metagenome; saliva
7684
7611
-
Cys
GCA
[ENA]
¡û
>WENV180009860
FLSC01129501
[FLSC] metagenome; saliva
857
930
+
Cys
GCA
[ENA]
¡û
>WENV180012081
FLSK01165663
[FLSK] metagenome; saliva
352
279
-
Cys
GCA
[ENA]
¡û
>WENV180698367
ODDH01000001
[ODDH] human metagenome; G_DNA_Buccal mucosa
92332
92405
+
Cys
GCA
[ENA]
¡û
>WENV180707809
ODFJ01000028
[ODFJ] human metagenome; G_DNA_Tongue dorsum
2252
2325
+
Cys
GCA
[ENA]
¡û
>WENV180722564
ODGM01002843
[ODGM] human metagenome; G_DNA_Palatine Tonsils
3083
3010
-
Cys
GCA
[ENA]
¡û
>WENV180722603
ODGM01003882
[ODGM] human metagenome; G_DNA_Palatine Tonsils
2323
2250
-
Cys
GCA
[ENA]
¡û
>WENV180725089
ODGR01010052
[ODGR] human metagenome; G_DNA_Tongue dorsum
736
809
+
Cys
GCA
[ENA]
¡û
>WENV180725755
ODGS01001770
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
5091
5164
+
Cys
GCA
[ENA]
¡û
>WENV180740760
ODHF01000001
[ODHF] human metagenome; G_DNA_Buccal mucosa
232047
231974
-
Cys
GCA
[ENA]
¡û
>WENV180759052
ODHY01000185
[ODHY] human metagenome; G_DNA_Buccal mucosa
20335
20408
+
Cys
GCA
[ENA]
¡û
>WENV180767380
ODIG01000013
[ODIG] human metagenome; G_DNA_Tongue dorsum
112922
112849
-
Cys
GCA
[ENA]
¡û
>WENV180773016
ODII01000768
[ODII] human metagenome; G_DNA_Buccal mucosa
3932
3859
-
Cys
GCA
[ENA]
¡û
>WENV180783307
ODIQ01004328
[ODIQ] human metagenome; G_DNA_Tongue dorsum
184
257
+
Cys
GCA
[ENA]
¡û
>WENV180788927
ODIS01155847
[ODIS] human metagenome; G_DNA_Supragingival plaque
50
123
+
Cys
GCA
[ENA]
¡û
>WENV180789637
ODIT01000144
[ODIT] human metagenome; G_DNA_Tongue dorsum
2305
2378
+
Cys
GCA
[ENA]
¡û
>WENV180791605
ODIV01000001
[ODIV] human metagenome; G_DNA_Buccal mucosa
169408
169335
-
Cys
GCA
[ENA]
¡û
>WENV180793627
ODIW01044773
[ODIW] human metagenome; G_DNA_Tongue dorsum
72
145
+
Cys
GCA
[ENA]
¡û
>WENV180794700
ODIZ01004067
[ODIZ] human metagenome; G_DNA_Tongue dorsum
1296
1223
-
Cys
GCA
[ENA]
¡û
>WENV180798055
ODJB01233668
[ODJB] human metagenome; G_DNA_Supragingival plaque
51
124
+
Cys
GCA
[ENA]
¡û
>WENV180802880
ODJE01013017
[ODJE] human metagenome; G_DNA_Tongue dorsum
680
753
+
Cys
GCA
[ENA]
¡û
>WENV180807864
ODJI01013826
[ODJI] human metagenome; G_DNA_Tongue dorsum
1461
1388
-
Cys
GCA
[ENA]
¡û
>WENV180810703
ODJM01000198
[ODJM] human metagenome; G_DNA_Buccal mucosa
7016
6943
-
Cys
GCA
[ENA]
¡û
>WENV180815966
ODJP01002983
[ODJP] human metagenome; G_DNA_Tongue dorsum
72
145
+
Cys
GCA
[ENA]
¡û
>WENV180819407
ODJR01000082
[ODJR] human metagenome; G_DNA_Tongue dorsum
49052
49125
+
Cys
GCA
[ENA]
¡û
>WENV180830357
ODKB01002075
[ODKB] human metagenome; G_DNA_Tongue dorsum
7532
7459
-
Cys
GCA
[ENA]
¡û
>WENV180841693
ODKK01001737
[ODKK] human metagenome; G_DNA_Buccal mucosa
307
380
+
Cys
GCA
[ENA]
¡û
>WENV180842230
ODKM01003103
[ODKM] human metagenome; G_DNA_Buccal mucosa
271
198
-
Cys
GCA
[ENA]
¡û
>WENV180853836
ODKX01000122
[ODKX] human metagenome; G_DNA_Tongue dorsum
52488
52415
-
Cys
GCA
[ENA]
¡û
>WENV180855842
ODKZ01000126
[ODKZ] human metagenome; G_DNA_Tongue dorsum
7969
8042
+
Cys
GCA
[ENA]
¡û
>WENV180857018
ODLA01000732
[ODLA] human metagenome; G_DNA_Buccal mucosa
4913
4840
-
Cys
GCA
[ENA]
¡û
>WENV180861677
ODLE01008458
[ODLE] human metagenome; G_DNA_Tongue dorsum
2306
2379
+
Cys
GCA
[ENA]
¡û
>WENV180863124
ODLG01000049
[ODLG] human metagenome; G_DNA_Buccal mucosa
19014
18941
-
Cys
GCA
[ENA]
¡û
>WENV180866006
ODLJ01002817
[ODLJ] human metagenome; G_DNA_Tongue dorsum
2230
2303
+
Cys
GCA
[ENA]
¡û
>WENV180877821
ODLV01003063
[ODLV] human metagenome; G_DNA_Tongue dorsum
5340
5267
-
Cys
GCA
[ENA]
¡û
>WENV180881865
ODMB01000191
[ODMB] human metagenome; G_DNA_Buccal mucosa
4615
4542
-
Cys
GCA
[ENA]
¡û
>WENV180912790
ODSM01021539
[ODSM] human metagenome; G_DNA_Buccal mucosa
87
160
+
Cys
GCA
[ENA]
¡û
>WENV180913228
ODST01000053
[ODST] human metagenome; G_DNA_Attached/Keratinized gingiva
1485
1558
+
Cys
GCA
[ENA]
¡û
>WENV180913274
ODST01000592
[ODST] human metagenome; G_DNA_Attached/Keratinized gingiva
543
616
+
Cys
GCA
[ENA]
¡û
>WENV180913288
ODST01000786
[ODST] human metagenome; G_DNA_Attached/Keratinized gingiva
73
146
+
Cys
GCA
[ENA]
¡û
>WENV180914580
ODSZ01000011
[ODSZ] human metagenome; G_DNA_Buccal mucosa
24280
24207
-
Cys
GCA
[ENA]
¡û
>WENV180917183
ODTD01006522
[ODTD] human metagenome; G_DNA_Tongue dorsum
72
145
+
Cys
GCA
[ENA]
¡û
>WENV180920411
ODTH01005199
[ODTH] human metagenome; G_DNA_Tongue dorsum
4146
4073
-
Cys
GCA
[ENA]
¡û
>WENV180930179
ODTO01000008
[ODTO] human metagenome; G_DNA_Buccal mucosa
40080
40007
-
Cys
GCA
[ENA]
¡û
>WENV180933150
ODTQ01021717
[ODTQ] human metagenome; G_DNA_Buccal mucosa
299
226
-
Cys
GCA
[ENA]
¡û
>WENV180936927
ODTV01002126
[ODTV] human metagenome; G_DNA_Buccal mucosa
432
359
-
Cys
GCA
[ENA]
¡û
>WENV180947304
ODUF01000023
[ODUF] human metagenome; G_DNA_Supragingival plaque
1127
1200
+
Cys
GCA
[ENA]
¡û
>WENV180949122
ODUG01008312
[ODUG] human metagenome; G_DNA_Tongue dorsum
2109
2182
+
Cys
GCA
[ENA]
¡û
>WENV180954668
ODUJ01005981
[ODUJ] human metagenome; G_DNA_Tongue dorsum
2916
2843
-
Cys
GCA
[ENA]
¡û
>WENV180958306
ODUL01002550
[ODUL] human metagenome; G_DNA_Supragingival plaque
176
103
-
Cys
GCA
[ENA]
¡û
>WENV180974460
ODUX01003099
[ODUX] human metagenome; G_DNA_Buccal mucosa
160
233
+
Cys
GCA
[ENA]
¡û
>WENV180977791
ODUZ01005710
[ODUZ] human metagenome; G_DNA_Tongue dorsum
701
774
+
Cys
GCA
[ENA]
¡û
>WENV180978653
ODVA01000723
[ODVA] human metagenome; G_DNA_Buccal mucosa
6277
6204
-
Cys
GCA
[ENA]
¡û
>WENV180980082
ODVD01000216
[ODVD] human metagenome; G_DNA_Buccal mucosa
7095
7022
-
Cys
GCA
[ENA]
¡û
>WENV180990161
ODVN01000511
[ODVN] human metagenome; G_DNA_Tongue dorsum
2319
2392
+
Cys
GCA
[ENA]
¡û
>WENV181001516
ODVW01000040
[ODVW] human metagenome; G_DNA_Buccal mucosa
17404
17477
+
Cys
GCA
[ENA]
¡û
>WENV181002520
ODVX01000551
[ODVX] human metagenome; G_DNA_Supragingival plaque
28828
28755
-
Cys
GCA
[ENA]
¡û
>WENV181013403
ODWN01000526
[ODWN] human metagenome; G_DNA_Tongue dorsum
21599
21526
-
Cys
GCA
[ENA]
¡û
>WENV181016461
ODWR01001188
[ODWR] human metagenome; G_DNA_Tongue dorsum
9586
9513
-
Cys
GCA
[ENA]
¡û
>WENV181021072
ODWV01001983
[ODWV] human metagenome; G_DNA_Tongue dorsum
4426
4353
-
Cys
GCA
[ENA]
¡û
>WENV181025760
ODXB01025606
[ODXB] human metagenome; G_DNA_Buccal mucosa
359
286
-
Cys
GCA
[ENA]
¡û
>WENV181027427
ODXD01001716
[ODXD] human metagenome; G_DNA_Buccal mucosa
814
887
+
Cys
GCA
[ENA]
¡û
>WENV181032639
ODXN01000273
[ODXN] human metagenome; G_DNA_Tongue dorsum
37513
37440
-
Cys
GCA
[ENA]
¡û
>WENV181040978
ODXS01002804
[ODXS] human metagenome; G_DNA_Tongue dorsum
7616
7543
-
Cys
GCA
[ENA]
¡û
>WENV181044641
ODXV01021408
[ODXV] human metagenome; G_DNA_Tongue dorsum
72
145
+
Cys
GCA
[ENA]
¡û
>WENV181046777
ODXX01004070
[ODXX] human metagenome; G_DNA_Buccal mucosa
699
772
+
Cys
GCA
[ENA]
¡û
>WENV181052865
ODYG01056751
[ODYG] human metagenome; G_DNA_Tongue dorsum
160
233
+
Cys
GCA
[ENA]
¡û
>WENV181057728
ODYL01000869
[ODYL] human metagenome; G_DNA_Tongue dorsum
19465
19392
-
Cys
GCA
[ENA]
¡û
>WENV181065503
ODYT01010967
[ODYT] human metagenome; G_DNA_Buccal mucosa
168
241
+
Cys
GCA
[ENA]
¡û
>WENV181084718
OEAX01000029
[OEAX] human metagenome; G_DNA_Tongue dorsum
17269
17342
+
Cys
GCA
[ENA]
¡û
>WENV181086883
OEAY01005033
[OEAY] human metagenome; G_DNA_Tongue dorsum
72
145
+
Cys
GCA
[ENA]
¡û
>WENV181096157
OEBY01061405
[OEBY] human metagenome; G_DNA_Tongue dorsum
11
84
+
Cys
GCA
[ENA]
¡û
>WENV181096799
OECA01000393
[OECA] human metagenome; G_DNA_Tongue dorsum
3215
3288
+
Cys
GCA
[ENA]
¡û
>WENV181113926
OEEO01000013
[OEEO] human metagenome; G_DNA_Supragingival plaque
33171
33244
+
Cys
GCA
[ENA]
¡û
>WENV181128880
OEFX01000429
[OEFX] human metagenome; G_DNA_Tongue dorsum
7947
8020
+
Cys
GCA
[ENA]
¡û
>WENV181131191
OEGA01000721
[OEGA] human metagenome; G_DNA_Buccal mucosa
37
110
+
Cys
GCA
[ENA]
¡û
>WENV181138721
OEGN01000522
[OEGN] human metagenome; G_DNA_Tongue dorsum
1586
1659
+
Cys
GCA
[ENA]
¡û
>WENV181157832
OEIG01036994
[OEIG] human metagenome; G_DNA_Hard palate
265
338
+
Cys
GCA
[ENA]
¡û
>WENV181158134
OEIG01167135
[OEIG] human metagenome; G_DNA_Hard palate
73
146
+
Cys
GCA
[ENA]
¡û
>WENV181159758
OEIK01000086
[OEIK] human metagenome; G_DNA_Supragingival plaque
35795
35722
-
Cys
GCA
[ENA]
¡û
>W141146463
AWVP01000073
Bacillota
Gemella bergeri ATCC 700627 [AWVP]
134
61
-
Cys
GCA
[ENA]
¡û
>WENV182412900
OIFW01005079
[OIFW] human gut metagenome; stool
304
377
+
Cys
GCA
[ENA]
¡û
>WENV183063293
OLIF01015214
[OLIF] metagenome; faeces
924
851
-
Cys
GCA
[ENA]
¡û
>WENV183225355
OLQN01063244
[OLQN] human gut metagenome; faeces
23
96
+
Cys
GCA
[ENA]
¡û
>C183003869
LS483440
Bacillota
Gemella morbillorum NCTC11323 [LS483440]
973978
973905
-
Cys
GCA
-
¡û
>C181070031
CP022615
Bacillota
Gemella sp. ND 6198 [CP022615]
1689188
1689115
-
Cys
GCA
-
¡û
>W141731932
JNJO01000004
Bacillota
Gemella sanguinis ATCC 700632 [JNJO]
3608
3681
+
Cys
GCA
[ENA]
¡û
>W1911596005
PNGT01000003
Bacillota
Gemella sanguinis UMB0186 [PNGT]
2289
2362
+
Cys
GCA
[ENA]
¡û
>W1911596017
PNGU01000001
Bacillota
Streptococcus sp. UMB1385 [PNGU]
305646
305719
+
Cys
GCA
[ENA]
¡û
>W2010581246
JAAXPT010000015
Bacillota
Gemella sanguinis SS1508 [JAAXPT]
24177
24104
-
Cys
GCA
[ENA]
¡û
>W2010666939
JACBYB010000007
Bacillota
Gemella sp. GL1 [JACBYB]
78800
78730
-
Cys
GCA
[ENA]
¡û
>W2010667008
JACBYC010000086
Bacillota
Gemella sp. GH3 [JACBYC]
4234
4164
-
Cys
GCA
[ENA]
¡û
>W2010667133
JACBYF010000006
Bacillota
Gemella palaticanis CIP 106318 [JACBYF]
36848
36778
-
Cys
GCA
[ENA]
¡û
>W2011204901
PNGT01000003
Bacillota
Gemella sanguinis UMB0186 [PNGT]
2289
2362
+
Cys
GCA
[ENA]
¡û
>W2011204913
PNGU01000001
Bacillota
Streptococcus sp. UMB1385 [PNGU]
305646
305719
+
Cys
GCA
[ENA]
¡û
>W2011672960
SPPQ01000005
Bacillota
Gemella sp. WT2a [SPPQ]
17153
17223
+
Cys
GCA
[ENA]
¡û
>W2012206330
VXKF01000001
Bacillota
Gemella haemolysans CCUG 37985T [VXKF]
160583
160656
+
Cys
GCA
[ENA]
¡û
>W2110074157
CABFLN010000036
Bacillota
Gemella haemolysans [CABFLN]
13847
13774
-
Cys
GCA
[ENA]
¡û
>W2110316533
JADGKJ010000007
Bacillota
Gemella sp. GL1.1 [JADGKJ]
78800
78730
-
Cys
GCA
[ENA]
¡û
>W2110316602
JADGKK010000086
Bacillota
Gemella sp. GH3.1 [JADGKK]
4234
4164
-
Cys
GCA
[ENA]
¡û
>W2110316727
JADGKN010000006
Bacillota
Gemella palaticanis CIP106318T.1 [JADGKN]
36848
36778
-
Cys
GCA
[ENA]
¡û
>W2110317098
JADGKU010000005
Bacillota
Gemella sp. 19428wG2_WT2a [JADGKU]
17153
17223
+
Cys
GCA
[ENA]
¡û
>C211404754
CP083637
Bacillota
Gemella haemolysans FDAARGOS_1500 [CP083637]
739832
739905
+
Cys
GCA
-
¡û
>C213006417
CP083636
Bacillota
Gemella morbillorum FDAARGOS_1501 [CP083636]
1075056
1074983
-
Cys
GCA
-
¡û
>C241107554
CP046313
Bacillota
Gemella sanguinis FDAARGOS_742 [CP046313]
62843
62770
-
Cys
GCA
-
¡û
>W11300159
ACRX01000004
Bacillota
Gemella morbillorum M424 [ACRX]
43892
43965
+
Cys
GCA
[ENA]
¡û
>W11104253
ACRO01000003
Bacillota
Gemella haemolysans M341 [ACRO]
252652
252579
-
Cys
GCA
[ENA]
¡û
>W11104590
ACRY01000028
Bacillota
Gemella sanguinis M325 [ACRY]
72904
72831
-
Cys
GCA
[ENA]
¡û
>W1511439602
JUOB01000010
Bacillota
Staphylococcus pasteuri 915_SPAS [JUOB]
78
151
+
Cys
GCA
[ENA]
¡û
>W1511475403
JWDE01000040
Bacillota
Gemella sanguinis 1094_BTHU [JWDE]
80
153
+
Cys
GCA
[ENA]
¡û
>C161069196
CP014233
Bacillota
Gemella sp. oral taxon 928 W2231 [CP014233]
1278635
1278562
-
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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