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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.466605 (35 seq.)
>W1710894091
LNFJ01000193
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
447
376
-
Trp
CCA
[ENA]
¡û
>W1710894178
LNFQ01000033
Bacteroidota
Bacteroidetes bacterium OLB11 [LNFQ]
72294
72367
+
Trp
CCA
[ENA]
¡û
>W1711421935
MIAH01000023
Bacteroidota
Sphingobacteriia bacterium RIFOXYD2_FULL_35_12 [MIAH]
28566
28493
-
Trp
CCA
[ENA]
¡û
>W1711506234
MKWF01000029
Bacteroidota
Sphingobacteriales bacterium 40-81 [MKWF]
265079
265008
-
Trp
CCA
[ENA]
¡û
>W1711510318
MLAV01000113
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
22178
22105
-
Trp
CCA
[ENA]
¡û
>W1712050009
NFUV01000002
Bacteroidota
Chitinophagaceae bacterium IBVUCB2 [NFUV]
669426
669497
+
Trp
CCA
[ENA]
¡û
>WENV180041353
LLBZ010103772
[LLBZ] soil metagenome; soil from tomato rhizosphere
1428
1357
-
Trp
CCA
[ENA]
¡û
>WENV181170511
OEIV010051989
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
603
532
-
Trp
CCA
[ENA]
¡û
>WENV181222489
OFDB01000418
[OFDB] metagenome; soil
1446
1517
+
Trp
CCA
[ENA]
¡û
>WENV181372248
OFQW01033555
[OFQW] wastewater metagenome; Exp Tend NO 90WW
298
227
-
Trp
CCA
[ENA]
¡û
>W141167908
AXUM01000021
Bacteroidota
Sediminibacterium sp. C3 [AXUM]
191277
191204
-
Trp
CCA
[ENA]
¡û
>W141171263
AXZP01000008
Bacteroidota
Sediminibacterium salmoneum NBRC 103935 [AXZP]
91384
91457
+
Trp
CCA
[ENA]
¡û
>WENV181838701
OGVN01011079
[OGVN] freshwater metagenome; freshwater
453
524
+
Trp
CCA
[ENA]
¡û
>WENV181842617
OGVT01007409
[OGVT] freshwater metagenome; freshwater
236
307
+
Trp
CCA
[ENA]
¡û
>WENV181843110
OGVU01000830
[OGVU] freshwater metagenome; freshwater
1400
1471
+
Trp
CCA
[ENA]
¡û
>WENV181843359
OGVU01010453
[OGVU] freshwater metagenome; freshwater
131
202
+
Trp
CCA
[ENA]
¡û
>WENV170680863
LFEF01028623
[LFEF] freshwater metagenome; waterbloom
464357
464428
+
Trp
CCA
[ENA]
¡û
>WENV170990177
MWVZ01250610
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
157
230
+
Trp
CCA
[ENA]
¡û
>WENV170995168
MWWE01190166
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
217
144
-
Trp
CCA
[ENA]
¡û
>WENV170995804
MWWF01064725
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
225
298
+
Trp
CCA
[ENA]
¡û
>WENV170996011
MWWF01117452
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
301
228
-
Trp
CCA
[ENA]
¡û
>WENV170996467
MWWF01283060
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
127
54
-
Trp
CCA
[ENA]
¡û
>WENV170999434
MWWK01056420
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
443
514
+
Trp
CCA
[ENA]
¡û
>C191085427
CP032157
Bacteroidota
Paraflavitalea soli 5GH32-13 [CP032157]
4363370
4363299
-
Trp
CCA
-
¡û
>W1810533316
QCZJ01000001
Bacteroidota
Terrimonas sp. NS-102 [QCZJ]
466933
467004
+
Trp
CCA
[ENA]
¡û
>W1810586509
QFFK01000005
Bacteroidota
Chitinophaga deserti XJ-2 [QFFK]
144646
144717
+
Trp
CCA
[ENA]
¡û
>W2010213346
CABHMS010000005
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
342094
342165
+
Trp
CCA
[ENA]
¡û
>W2010213406
CABHMT010000007
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
91841
91912
+
Trp
CCA
[ENA]
¡û
>W2110649235
JAHUWJ010000011
Bacteroidota
Chitinophaga sp. sic0106 [JAHUWJ]
16155
16226
+
Trp
CCA
[ENA]
¡û
>C201306203
CP060007
Bacteroidota
Lacibacter sp. S13-6-6 [CP060007]
1480469
1480540
+
Trp
CCA
-
¡û
>C211365496
CP079103
Bacteroidota
Chitinophaga sp. E66 [CP079103]
4329340
4329269
-
Trp
CCA
-
¡û
>C211401646
CP083387
Bacteroidota
Arachidicoccus sp. 5GH13-10 [CP083387]
1250347
1250418
+
Trp
CCA
-
¡û
>C211401697
CP083388
Bacteroidota
Ferruginibacter sp. KIS38-8 [CP083388]
1677935
1678006
+
Trp
CCA
-
¡û
>C231220706
CP086063
Bacteroidota
Ferruginibacter lapsinanis KACC 15035 [CP086063]
2395517
2395588
+
Trp
CCA
-
¡û
>W1710533212
FNQY01000033
Bacteroidota
Arachidicoccus rhizosphaerae [FNQY]
31199
31272
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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