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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467008 (83 seq.)
>W131045683
AMRQ01000003
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [AMRQ]
403331
403404
+
Cys
GCA
[ENA]
¡û
>W1710989430
LPVX01000029
Alphaproteobacteria
Thalassospira sp. MCCC 1A02491 [LPVX]
301085
301158
+
Cys
GCA
[ENA]
¡û
>W1710989455
LPVY01000003
Alphaproteobacteria
Thalassospira lucentensis [LPVY]
283473
283546
+
Cys
GCA
[ENA]
¡û
>W1710989508
LPVZ01000012
Alphaproteobacteria
Thalassospira sp. MCCC 1A01148 [LPVZ]
419237
419310
+
Cys
GCA
[ENA]
¡û
>W1710991101
LPXK01000013
Alphaproteobacteria
Thalassospira sp. MCCC 1A02898 [LPXK]
298713
298786
+
Cys
GCA
[ENA]
¡û
>W1710991155
LPXL01000056
Alphaproteobacteria
Thalassospira xiamenensis [LPXL]
87883
87956
+
Cys
GCA
[ENA]
¡û
>C009136
CP000157
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [CP000157]
2060468
2060395
-
Cys
GCA
[Ensembl]
¡û
>WENV182566980
OJEN01000262
[OJEN] seawater metagenome; Sea water
11573
11500
-
Cys
GCA
[ENA]
¡û
>WENV182568798
OJEX01000009
[OJEX] seawater metagenome; Sea water
687
614
-
Cys
GCA
[ENA]
¡û
>WENV182577273
OJGD01000183
[OJGD] seawater metagenome; Sea water
10656
10729
+
Cys
GCA
[ENA]
¡û
>WENV182587498
OJHM01015300
[OJHM] seawater metagenome; Sea water
294
221
-
Cys
GCA
[ENA]
¡û
>WENV183631221
OOGU01052998
[OOGU] marine metagenome; sea ice
338
265
-
Cys
GCA
[ENA]
¡û
>WENV170345802
CETF01075199
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
522
449
-
Cys
GCA
[ENA]
¡û
>WENV170520662
CEWE01549647
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
119
46
-
Cys
GCA
[ENA]
¡û
>WENV170576291
FRDC01000339
[FRDC] freshwater metagenome; water
20098
20171
+
Cys
GCA
[ENA]
¡û
>WENV170576449
FRDC01000615
[FRDC] freshwater metagenome; water
8198
8125
-
Cys
GCA
[ENA]
¡û
>WENV170892781
MDTD01042708
[MDTD] marine metagenome; seawater
2839
2912
+
Cys
GCA
[ENA]
¡û
>WENV170923335
MDTG01047710
[MDTG] marine metagenome; seawater
138
65
-
Cys
GCA
[ENA]
¡û
>C181097328
CP024199
Alphaproteobacteria
Thalassospira marina CSC3H3 [CP024199]
1987775
1987702
-
Cys
GCA
-
¡û
>C181202105
CP031555
Alphaproteobacteria
Thalassospira indica PB8BT [CP031555]
2522132
2522059
-
Cys
GCA
-
¡û
>W09101649
AAGG01000003
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [AAGG]
184807
184880
+
Cys
GCA
[ENA]
¡û
>W1910574185
JPVY01000015
Alphaproteobacteria
Thalassospira lucentensis MCCC 1A00383 = DSM 14000 [JPVY]
101
28
-
Cys
GCA
[ENA]
¡û
>W1910574254
JPWA01000012
Alphaproteobacteria
Thalassospira xianhensis MCCC 1A02616 [JPWA]
133122
133195
+
Cys
GCA
[ENA]
¡û
>W1910574318
JPWB01000007
Alphaproteobacteria
Thalassospira profundimaris R8-17 [JPWB]
265335
265408
+
Cys
GCA
[ENA]
¡û
>W1910574390
JPWD01000002
Alphaproteobacteria
Thalassospira xiamenensis W3-1 [JPWD]
792649
792722
+
Cys
GCA
[ENA]
¡û
>W1910574467
JPWG01000001
Alphaproteobacteria
Thalassospira xiamenensis S27-11 [JPWG]
423170
423243
+
Cys
GCA
[ENA]
¡û
>W1910574547
JPWH01000018
Alphaproteobacteria
Thalassospira profundimaris S25-3-2 [JPWH]
108
35
-
Cys
GCA
[ENA]
¡û
>W1910574601
JPWI01000016
Alphaproteobacteria
Thalassospira profundimaris PR54-5 [JPWI]
109866
109939
+
Cys
GCA
[ENA]
¡û
>W1910574652
JPWJ01000014
Alphaproteobacteria
Thalassospira xiamenensis IB13 [JPWJ]
109678
109751
+
Cys
GCA
[ENA]
¡û
>W1911410102
NWTK01000005
Alphaproteobacteria
Thalassospira sp. CSC1P2 [NWTK]
107131
107204
+
Cys
GCA
[ENA]
¡û
>W1911424857
NXGX01000002
Alphaproteobacteria
Thalassospira lohafexi 139Z-12 [NXGX]
218295
218222
-
Cys
GCA
[ENA]
¡û
>W1911494918
OBMM01000001
Alphaproteobacteria
Thalassospira xiamenensis USBA 78 [OBMM]
433447
433520
+
Cys
GCA
[ENA]
¡û
>W1810659361
QJKA01000001
Alphaproteobacteria
Thalassospira sp. 11-3 [QJKA]
740679
740606
-
Cys
GCA
[ENA]
¡û
>C151006613
CP004388
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [CP004388]
2017835
2017762
-
Cys
GCA
[Ensembl]
¡û
>C151096893
CP012669
Alphaproteobacteria
Altererythrobacter epoxidivorans CGMCC 1.7731 [CP012669]
316473
316546
+
Cys
GCA
-
¡û
>W2010569712
JAATOV010000003
Alphaproteobacteria
Thalassospira lucentensis HF2 [JAATOV]
462907
462980
+
Cys
GCA
[ENA]
¡û
>W2010572440
JAAVKI010000001
Alphaproteobacteria
Thalassospira sp. HF15 [JAAVKI]
469436
469509
+
Cys
GCA
[ENA]
¡û
>W2010759666
JPVY01000015
Alphaproteobacteria
Thalassospira lucentensis MCCC 1A00383 = DSM 14000 [JPVY]
101
28
-
Cys
GCA
[ENA]
¡û
>W2010759735
JPWA01000012
Alphaproteobacteria
Thalassospira xianhensis MCCC 1A02616 [JPWA]
133122
133195
+
Cys
GCA
[ENA]
¡û
>W2010759799
JPWB01000007
Alphaproteobacteria
Thalassospira profundimaris R8-17 [JPWB]
265335
265408
+
Cys
GCA
[ENA]
¡û
>W2010759871
JPWD01000002
Alphaproteobacteria
Thalassospira xiamenensis W3-1 [JPWD]
792649
792722
+
Cys
GCA
[ENA]
¡û
>W2010759948
JPWG01000001
Alphaproteobacteria
Thalassospira xiamenensis S27-11 [JPWG]
423170
423243
+
Cys
GCA
[ENA]
¡û
>W2010760028
JPWH01000018
Alphaproteobacteria
Thalassospira profundimaris S25-3-2 [JPWH]
108
35
-
Cys
GCA
[ENA]
¡û
>W2010760082
JPWI01000016
Alphaproteobacteria
Thalassospira profundimaris PR54-5 [JPWI]
109866
109939
+
Cys
GCA
[ENA]
¡û
>W2010760133
JPWJ01000014
Alphaproteobacteria
Thalassospira xiamenensis IB13 [JPWJ]
109678
109751
+
Cys
GCA
[ENA]
¡û
>W2011136940
NWTK01000005
Alphaproteobacteria
Thalassospira sp. CSC1P2 [NWTK]
107131
107204
+
Cys
GCA
[ENA]
¡û
>W2011144487
NXGX01000002
Alphaproteobacteria
Thalassospira lohafexi 139Z-12 [NXGX]
218295
218222
-
Cys
GCA
[ENA]
¡û
>W2011155822
OBMM01000001
Alphaproteobacteria
Thalassospira xiamenensis USBA 78 [OBMM]
433447
433520
+
Cys
GCA
[ENA]
¡û
>W2011354296
RAPP01000002
Alphaproteobacteria
Thalassospira sp. DSM 26710 [RAPP]
81392
81465
+
Cys
GCA
[ENA]
¡û
>W2011522721
SADE01000001
Alphaproteobacteria
Hwanghaeella grinnelliae Gri0909 [SADE]
1495812
1495739
-
Cys
GCA
[ENA]
¡û
>W2012082771
VLLK01000001
Alphaproteobacteria
Altererythrobacter ishigakiensis ATCC BAA-2084 [VLLK]
831862
831935
+
Cys
GCA
[ENA]
¡û
>W2110094407
CAJCJC010000181
Alphaproteobacteria
Alphaproteobacteria bacterium [CAJCJC]
319
246
-
Cys
GCA
[ENA]
¡û
>W2110569092
JAGSGB010000004
Alphaproteobacteria
Pacificimonas aurantium DSM 107782 [JAGSGB]
57931
57858
-
Cys
GCA
[ENA]
¡û
>W2110653901
JAHVJJ010000001
Alphaproteobacteria
Qipengyuania aquimaris DP1N28-9 [JAHVJJ]
762678
762751
+
Cys
GCA
[ENA]
¡û
>W2110677837
JAIGNL010000001
Alphaproteobacteria
Qipengyuania sp. 1NDW9 [JAIGNL]
635967
636040
+
Cys
GCA
[ENA]
¡û
>C211206580
CP065428
Alphaproteobacteria
Thalassospira sp. A40-3 [CP065428]
2030834
2030907
+
Cys
GCA
-
¡û
>W1510030955
CCDX020000005
Alphaproteobacteria
Thalassospira sp. GB04J01 [CCDX]
678
605
-
Cys
GCA
[ENA]
¡û
>C231308914
CP091912
Alphaproteobacteria
Thalassospiraceae bacterium SW-3-3 [CP091912]
1953555
1953482
-
Cys
GCA
-
¡û
>W2110761454
QTKV01000001
Alphaproteobacteria
Thalassospira tepidiphila BEBW28 [QTKV]
764986
764913
-
Cys
GCA
[ENA]
¡û
>C231393163
CP097807
Alphaproteobacteria
Thalassospira sp. GO-4 [CP097807]
769244
769171
-
Cys
GCA
-
¡û
>W2110772014
VDEZ01000002
Alphaproteobacteria
Thalassospira sp. ER-Se-21-Dark [VDEZ]
637044
636971
-
Cys
GCA
[ENA]
¡û
>C241010551
AP027267
Alphaproteobacteria
Thalassospira tepidiphila IFOP_LL337 [AP027267]
2049516
2049589
+
Cys
GCA
-
¡û
>C241329014
CP136684
Alphaproteobacteria
Thalassospira lucentensis LC.270.F.C4 [CP136684]
3705560
3705487
-
Cys
GCA
-
¡û
>W1511347366
JRJE01000031
Alphaproteobacteria
Thalassospira australica NP3b2 [JRJE]
197420
197347
-
Cys
GCA
[ENA]
¡û
>C161092424
CP015963
Alphaproteobacteria
Altererythrobacter ishigakiensis NBRC 107699 [CP015963]
2596497
2596424
-
Cys
GCA
-
¡û
>W1610527051
JPVZ01000005
Alphaproteobacteria
Thalassospira tepidiphila MCCC 1A03514 [JPVZ]
105
32
-
Cys
GCA
[ENA]
¡û
>W1610527083
JPWE01000005
Alphaproteobacteria
Thalassospira profundimaris [JPWE]
301126
301199
+
Cys
GCA
[ENA]
¡û
>W1610844260
LPVW01000017
Alphaproteobacteria
Thalassospira xiamenensis [LPVW]
109518
109591
+
Cys
GCA
[ENA]
¡û
>W1610844306
LPVX01000029
Alphaproteobacteria
Thalassospira sp. MCCC 1A02491 [LPVX]
301085
301158
+
Cys
GCA
[ENA]
¡û
>W1610844331
LPVY01000003
Alphaproteobacteria
Thalassospira lucentensis [LPVY]
283473
283546
+
Cys
GCA
[ENA]
¡û
>W1610844384
LPVZ01000012
Alphaproteobacteria
Thalassospira sp. MCCC 1A01148 [LPVZ]
419237
419310
+
Cys
GCA
[ENA]
¡û
>W1610845773
LPXK01000013
Alphaproteobacteria
Thalassospira sp. MCCC 1A02898 [LPXK]
298713
298786
+
Cys
GCA
[ENA]
¡û
>W1610845827
LPXL01000056
Alphaproteobacteria
Thalassospira xiamenensis [LPXL]
87883
87956
+
Cys
GCA
[ENA]
¡û
>W1610845872
LPXM01000028
Alphaproteobacteria
Thalassospira xiamenensis [LPXM]
62028
61955
-
Cys
GCA
[ENA]
¡û
>W1710537429
FNTU01000002
Alphaproteobacteria
Thalassospira permensis KO164 [FNTU]
3268204
3268131
-
Cys
GCA
[ENA]
¡û
>W1710599175
FTON01000003
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [FTON]
414806
414879
+
Cys
GCA
[ENA]
¡û
>W1710609206
FXWG01000002
Alphaproteobacteria
Altererythrobacter xiamenensis [FXWG]
743179
743252
+
Cys
GCA
[ENA]
¡û
>W1710613459
JAMA01000002
Alphaproteobacteria
Thalassospira sp. MCCC 1A02803 [JAMA]
615082
615009
-
Cys
GCA
[ENA]
¡û
>W1710616484
JFJY01000003
Alphaproteobacteria
Thalassospira sp. MCCC 1A03138 [JFJY]
108
35
-
Cys
GCA
[ENA]
¡û
>W1710616605
JFKA01000005
Alphaproteobacteria
Thalassospira mesophila [JFKA]
106
33
-
Cys
GCA
[ENA]
¡û
>W1710616664
JFKB01000024
Alphaproteobacteria
Thalassospira alkalitolerans [JFKB]
56066
56139
+
Cys
GCA
[ENA]
¡û
>W1710628638
JPWE01000005
Alphaproteobacteria
Thalassospira profundimaris [JPWE]
301126
301199
+
Cys
GCA
[ENA]
¡û
>W1710636864
JRJD01000001
Alphaproteobacteria
Thalassospira sp. TSL5-1 [JRJD]
1598999
1598926
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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