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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467300 (50 seq.)
>W131221612
AUAP01000021
Betaproteobacteria
Conchiformibius kuhniae DSM 17694 [AUAP]
14565
14638
+
Cys
GCA
[ENA]
¡û
>W1711710979
MTAA01000035
Betaproteobacteria
Neisseria dumasiana 114725 [MTAA]
717
644
-
Cys
GCA
[ENA]
¡û
>W1711711018
MTAB01000026
Betaproteobacteria
Neisseria dumasiana 124861 [MTAB]
14549
14476
-
Cys
GCA
[ENA]
¡û
>WENV180041386
LLBZ010115686
[LLBZ] soil metagenome; soil from tomato rhizosphere
740
667
-
Cys
GCA
[ENA]
¡û
>WENV180733257
ODGY01084337
[ODGY] human metagenome; G_DNA_Supragingival plaque
147
74
-
Cys
GCA
[ENA]
¡û
>WENV180736241
ODHB01012531
[ODHB] human metagenome; G_DNA_Supragingival plaque
1081
1008
-
Cys
GCA
[ENA]
¡û
>WENV180739286
ODHD01024939
[ODHD] human metagenome; G_DNA_Supragingival plaque
499
572
+
Cys
GCA
[ENA]
¡û
>WENV180777523
ODIL01013905
[ODIL] human metagenome; G_DNA_Supragingival plaque
748
675
-
Cys
GCA
[ENA]
¡û
>WENV180777705
ODIL01057838
[ODIL] human metagenome; G_DNA_Supragingival plaque
77
4
-
Cys
GCA
[ENA]
¡û
>WENV180778364
ODIM01004359
[ODIM] human metagenome; G_DNA_Supragingival plaque
1210
1283
+
Cys
GCA
[ENA]
¡û
>WENV180787176
ODIS01001874
[ODIS] human metagenome; G_DNA_Supragingival plaque
826
753
-
Cys
GCA
[ENA]
¡û
>WENV180814270
ODJO01011303
[ODJO] human metagenome; G_DNA_Supragingival plaque
267
194
-
Cys
GCA
[ENA]
¡û
>WENV180847233
ODKT01054373
[ODKT] human metagenome; G_DNA_Supragingival plaque
936
863
-
Cys
GCA
[ENA]
¡û
>WENV180927225
ODTM01000077
[ODTM] human metagenome; G_DNA_Supragingival plaque
30136
30209
+
Cys
GCA
[ENA]
¡û
>WENV180933558
ODTR01000546
[ODTR] human metagenome; G_DNA_Supragingival plaque
17099
17026
-
Cys
GCA
[ENA]
¡û
>WENV180943385
ODUC01000350
[ODUC] human metagenome; G_DNA_Supragingival plaque
26399
26472
+
Cys
GCA
[ENA]
¡û
>WENV180958003
ODUL01000114
[ODUL] human metagenome; G_DNA_Supragingival plaque
10808
10881
+
Cys
GCA
[ENA]
¡û
>WENV180972620
ODUW01000007
[ODUW] human metagenome; G_DNA_Supragingival plaque
90252
90325
+
Cys
GCA
[ENA]
¡û
>WENV180976868
ODUY01309396
[ODUY] human metagenome; G_DNA_Supragingival plaque
104
31
-
Cys
GCA
[ENA]
¡û
>WENV180978780
ODVA01006781
[ODVA] human metagenome; G_DNA_Buccal mucosa
108
35
-
Cys
GCA
[ENA]
¡û
>WENV180982441
ODVF01000019
[ODVF] human metagenome; G_DNA_Supragingival plaque
54842
54769
-
Cys
GCA
[ENA]
¡û
>WENV181003139
ODVX01005448
[ODVX] human metagenome; G_DNA_Supragingival plaque
4353
4426
+
Cys
GCA
[ENA]
¡û
>WENV181007648
ODWE01000371
[ODWE] human metagenome; G_DNA_Supragingival plaque
24728
24655
-
Cys
GCA
[ENA]
¡û
>WENV181009373
ODWE01058939
[ODWE] human metagenome; G_DNA_Supragingival plaque
557
630
+
Cys
GCA
[ENA]
¡û
>WENV181025758
ODXB01025288
[ODXB] human metagenome; G_DNA_Buccal mucosa
324
397
+
Cys
GCA
[ENA]
¡û
>WENV181091334
OEBC01026228
[OEBC] human metagenome; G_DNA_Supragingival plaque
1330
1257
-
Cys
GCA
[ENA]
¡û
>WENV181107467
OEEI01008317
[OEEI] human metagenome; G_DNA_Supragingival plaque
407
334
-
Cys
GCA
[ENA]
¡û
>WENV181158458
OEIH01001580
[OEIH] human metagenome; G_DNA_Supragingival plaque
3101
3174
+
Cys
GCA
[ENA]
¡û
>WENV181160804
OEIK01040834
[OEIK] human metagenome; G_DNA_Supragingival plaque
522
595
+
Cys
GCA
[ENA]
¡û
>WENV181179272
OEJT01002636
[OEJT] human metagenome; G_DNA_Supragingival plaque
87
160
+
Cys
GCA
[ENA]
¡û
>WENV170661366
JXWV01015193
[JXWV] soil metagenome; rice field; organic FYM Plot
295
222
-
Cys
GCA
[ENA]
¡û
>WENV170857385
MDTB01008259
[MDTB] marine metagenome; seawater
785
858
+
Cys
GCA
[ENA]
¡û
>C191211115
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
1971614
1971541
-
Cys
GCA
-
¡û
>C191213643
LR134516
Betaproteobacteria
Neisseria animaloris NCTC12227 [LR134516]
1701373
1701446
+
Cys
GCA
-
¡û
>W141562934
JHZP01000002
Betaproteobacteria
Conchiformibius steedae DSM 2580 [JHZP]
100628
100555
-
Cys
GCA
[ENA]
¡û
>W1810227891
POXR01000003
Betaproteobacteria
Neisseria animaloris C2012029644 [POXR]
134166
134093
-
Cys
GCA
[ENA]
¡û
>W1810228453
POYC01000003
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
180031
179958
-
Cys
GCA
[ENA]
¡û
>W2010833042
MERO01000239
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 [MERO]
15061
14988
-
Cys
GCA
[ENA]
¡û
>W2010833067
MERP01000104
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 [MERP]
73
1
-
Cys
GCA
[ENA]
¡û
>W2011483243
RQYC01000009
Betaproteobacteria
Conchiformibius steedae COT-280 [RQYC]
837
764
-
Cys
GCA
[ENA]
¡û
>W2011485637
RRUE01000001
Betaproteobacteria
Lautropia sp. KCOM 2505 [RRUE]
1855204
1855131
-
Cys
GCA
[ENA]
¡û
>C231299943
CP091510
Betaproteobacteria
Neisseria arctica KH1503 [CP091510]
491171
491098
-
Cys
GCA
-
¡û
>C231385755
CP097501
Betaproteobacteria
Conchiformibius steedae DSM 2580 [CP097501]
1397755
1397828
+
Cys
GCA
-
¡û
>C241178124
CP059563
Betaproteobacteria
Conchiformibius steedae DSM 2580 [CP059563]
731943
732016
+
Cys
GCA
-
¡û
>C241178388
CP059567
Betaproteobacteria
Neisseria shayeganii DSM 22244 [CP059567]
651769
651696
-
Cys
GCA
-
¡û
>C241178504
CP059570
Betaproteobacteria
Neisseria dentiae DSM 19151 [CP059570]
169976
169903
-
Cys
GCA
-
¡û
>W1511398400
JTDO01000005
Betaproteobacteria
Neisseria arctica KH1503 [JTDO]
131075
131148
+
Cys
GCA
[ENA]
¡û
>W11177486
AGAY01000060
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
7739
7812
+
Cys
GCA
[ENA]
¡û
>W1610617996
LGZA01000028
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
27695
27768
+
Cys
GCA
[ENA]
¡û
>W1710744171
LGZA01000028
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
27695
27768
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK