This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467483 (49 seq.)
>W08005650
ABIC01000004
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
118517
118590
+
Cys
GCA
[ENA]
¡û
>W08005693
ABIC01000034
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
11264
11194
-
Cys
GCA
[ENA]
¡û
>WENV170387575
CETY01450299
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2283
2356
+
Cys
GCA
[ENA]
¡û
>WENV170889297
MDTC01272705
[MDTC] marine metagenome; seawater
25947
26020
+
Cys
GCA
[ENA]
¡û
>C181214185
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
2287172
2287245
+
Cys
GCA
-
¡û
>C181214224
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
2578281
2578208
-
Cys
GCA
-
¡û
>C191117193
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
1836086
1836159
+
Cys
GCA
-
¡û
>C191117251
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
2749407
2749334
-
Cys
GCA
-
¡û
>C191173215
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4475593
4475666
+
Cys
GCA
-
¡û
>C191173257
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
552433
552360
-
Cys
GCA
-
¡û
>C191185846
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1514045
1514118
+
Cys
GCA
-
¡û
>C191185893
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2351696
2351623
-
Cys
GCA
-
¡û
>W1911581896
PGVH01000013
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
181140
181067
-
Cys
GCA
[ENA]
¡û
>W1911581951
PGVH01000043
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
332204
332131
-
Cys
GCA
[ENA]
¡û
>W1810155303
PJAP01000600
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
3531
3604
+
Cys
GCA
[ENA]
¡û
>W1810157801
PJCD01000041
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
70600
70673
+
Cys
GCA
[ENA]
¡û
>W1810157811
PJCD01000042
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
138259
138186
-
Cys
GCA
[ENA]
¡û
>W2010734404
JACJDU010000007
Gammaproteobacteria
Shewanella sp. SR44-4 [JACJDU]
23198
23271
+
Cys
GCA
[ENA]
¡û
>W2010734451
JACJDU010000039
Gammaproteobacteria
Shewanella sp. SR44-4 [JACJDU]
39913
39986
+
Cys
GCA
[ENA]
¡û
>W2010734705
JACJDX010000007
Gammaproteobacteria
Shewanella sp. SR43-8 [JACJDX]
295728
295655
-
Cys
GCA
[ENA]
¡û
>W2010734727
JACJDX010000010
Gammaproteobacteria
Shewanella sp. SR43-8 [JACJDX]
250060
250133
+
Cys
GCA
[ENA]
¡û
>W2010734741
JACJDX010000018
Gammaproteobacteria
Shewanella sp. SR43-8 [JACJDX]
123
50
-
Cys
GCA
[ENA]
¡û
>W2010735063
JACJEB010000002
Gammaproteobacteria
Shewanella sp. SR43-4 [JACJEB]
309125
309052
-
Cys
GCA
[ENA]
¡û
>W2010735078
JACJEB010000004
Gammaproteobacteria
Shewanella sp. SR43-4 [JACJEB]
296502
296429
-
Cys
GCA
[ENA]
¡û
>W2010736597
JACJER010000105
Gammaproteobacteria
Shewanella sp. SG44-6 [JACJER]
123
50
-
Cys
GCA
[ENA]
¡û
>W2010736601
JACJER010000122
Gammaproteobacteria
Shewanella sp. SG44-6 [JACJER]
123
50
-
Cys
GCA
[ENA]
¡û
>W2010736627
JACJER010000392
Gammaproteobacteria
Shewanella sp. SG44-6 [JACJER]
210
137
-
Cys
GCA
[ENA]
¡û
>W2010738262
JACJFI010000127
Gammaproteobacteria
Shewanella sp. SG41-4 [JACJFI]
7730
7657
-
Cys
GCA
[ENA]
¡û
>W2010738317
JACJFJ010000001
Gammaproteobacteria
Shewanella sp. SG41-3 [JACJFJ]
630578
630651
+
Cys
GCA
[ENA]
¡û
>W2010738355
JACJFJ010000005
Gammaproteobacteria
Shewanella sp. SG41-3 [JACJFJ]
388611
388538
-
Cys
GCA
[ENA]
¡û
>W2011192518
PGVH01000013
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
181140
181067
-
Cys
GCA
[ENA]
¡û
>W2011192573
PGVH01000043
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
332204
332131
-
Cys
GCA
[ENA]
¡û
>W2011451141
RKKC01000003
Gammaproteobacteria
Shewanella frigidimarina KCCM 41815 [RKKC]
164563
164490
-
Cys
GCA
[ENA]
¡û
>W2011451179
RKKC01000016
Gammaproteobacteria
Shewanella frigidimarina KCCM 41815 [RKKC]
109067
109140
+
Cys
GCA
[ENA]
¡û
>W2011451217
RKKD01000001
Gammaproteobacteria
Shewanella vesiculosa LMG 24424 [RKKD]
308858
308785
-
Cys
GCA
[ENA]
¡û
>W2011451239
RKKD01000006
Gammaproteobacteria
Shewanella vesiculosa LMG 24424 [RKKD]
111672
111745
+
Cys
GCA
[ENA]
¡û
>W2011451331
RKKE01000003
Gammaproteobacteria
Shewanella arctica Kim et al. 2012 KCTC 23109 [RKKE]
58589
58662
+
Cys
GCA
[ENA]
¡û
>W2011451377
RKKE01000008
Gammaproteobacteria
Shewanella arctica Kim et al. 2012 KCTC 23109 [RKKE]
4959
4886
-
Cys
GCA
[ENA]
¡û
>W2110401776
JADZHL010000020
Gammaproteobacteria
Shewanella algae CCUG-72638 [JADZHL]
160266
160339
+
Cys
GCA
[ENA]
¡û
>W2110492289
JAFEUN010000120
Gammaproteobacteria
Shewanella sp. 202IG2-18 [JAFEUN]
364
437
+
Cys
GCA
[ENA]
¡û
>W2110492302
JAFEUN010000165
Gammaproteobacteria
Shewanella sp. 202IG2-18 [JAFEUN]
6019
6092
+
Cys
GCA
[ENA]
¡û
>C201098476
CP041614
Gammaproteobacteria
Shewanella sp. YLB-06 [CP041614]
2766369
2766442
+
Cys
GCA
-
¡û
>C201098479
CP041614
Gammaproteobacteria
Shewanella sp. YLB-06 [CP041614]
3223510
3223583
+
Cys
GCA
-
¡û
>C231131297
CP073588
Gammaproteobacteria
Shewanella vesiculosa M7 [CP073588]
360103
360176
+
Cys
GCA
-
¡û
>C231131311
CP073588
Gammaproteobacteria
Shewanella vesiculosa M7 [CP073588]
1073560
1073633
+
Cys
GCA
-
¡û
>C10112829
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
2491520
2491593
+
Cys
GCA
[Ensembl]
¡û
>W1610875177
LRDC01000010
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
72660
72733
+
Cys
GCA
[ENA]
¡û
>W1610875183
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
40245
40318
+
Cys
GCA
[ENA]
¡û
>WENV078045
AAFY01012916
Fossil microbial community from Whale Fall (Santa Cruz Basin)
105
178
+
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK