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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4687 (104 seq.)
>W1711372509
MDTN01000025
Bacillota
Lactobacillus jensenii [MDTN]
72910
72820
-
Ser
TGA
[ENA]
¡û
>W1712039825
NFJY01000024
Bacillota
Lactobacillus johnsonii [NFJY]
2787
2877
+
Ser
TGA
[ENA]
¡û
>C171084530
CP018809
Bacillota
Lactobacillus jensenii SNUV360 [CP018809]
1335860
1335770
-
Ser
TGA
-
¡û
>C171121863
CP021703
Bacillota
Lactobacillus johnsonii UMNLJ21 [CP021703]
401105
401195
+
Ser
TGA
-
¡û
>C171121954
CP021704
Bacillota
Lactobacillus johnsonii UMNLJ22 [CP021704]
120552
120462
-
Ser
TGA
-
¡û
>C173000787
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
938957
938867
-
Ser
TGA
-
¡û
>C173001804
CP021427
Bacillota
Lactobacillus gasseri 4M13 [CP021427]
1292159
1292249
+
Ser
TGA
-
¡û
>W131226374
AUEI01000001
Bacillota
Lactobacillus psittaci DSM 15354 [AUEI]
6184
6274
+
Ser
TGA
[ENA]
¡û
>C028249
CP000413
Bacillota
Lactobacillus gasseri ATCC 33323 = JCM 1131 [CP000413]
1574265
1574175
-
Ser
TGA
[Ensembl]
¡û
>C028258
AE017198
Bacillota
Lactobacillus johnsonii NCC 533 [AE017198]
1678209
1678119
-
Ser
TGA
[Ensembl]
¡û
>WENV180810528
ODJL01000009
[ODJL] human metagenome; G_DNA_Posterior fornix
150
60
-
Ser
TGA
[ENA]
¢þ
>WENV180845110
ODKS01000006
[ODKS] human metagenome; G_DNA_Posterior fornix
8825
8915
+
Ser
TGA
[ENA]
¢þ
>WENV180887162
ODMF01003850
[ODMF] human metagenome; G_DNA_Posterior fornix
110
200
+
Ser
TGA
[ENA]
¢þ
>WENV180912581
ODSK01000051
[ODSK] human metagenome; G_DNA_Posterior fornix
3234
3144
-
Ser
TGA
[ENA]
¢þ
>WENV180914406
ODSW01000215
[ODSW] human metagenome; G_DNA_Posterior fornix
4188
4278
+
Ser
TGA
[ENA]
¢þ
>W141094675
AVCU01000011
Bacillota
Lactobacillus jensenii MD IIE-70(2) [AVCU]
4993
5083
+
Ser
TGA
[ENA]
¡û
>C183000198
CP006803
Bacillota
Lactobacillus gasseri DSM 14869 [CP006803]
1843664
1843754
+
Ser
TGA
-
¡û
>C183003354
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1645071
1645161
+
Ser
TGA
-
¡û
>C193000100
AP018549
Bacillota
Lactobacillus paragasseri JCM 5343 [AP018549]
1609619
1609529
-
Ser
TGA
-
¡û
>C193001305
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1614820
1614910
+
Ser
TGA
-
¡û
>C193001590
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1701055
1700965
-
Ser
TGA
-
¡û
>C193002922
CP040500
Bacillota
Lactobacillus paragasseri JV-V03 [CP040500]
1641723
1641633
-
Ser
TGA
-
¡û
>C193003445
LR134325
Bacillota
Lactobacillus paragasseri NCTC13720 [LR134325]
1635894
1635804
-
Ser
TGA
-
¡û
>W09110873
ABWG01000001
Bacillota
Lactobacillus jensenii 1153 [ABWG]
19665
19575
-
Ser
TGA
[ENA]
¡û
>W09123021
ACGQ01000052
Bacillota
Lactobacillus jensenii JV-V16 [ACGQ]
4473
4383
-
Ser
TGA
[ENA]
¡û
>W09133326
ACOY01000047
Bacillota
Lactobacillus jensenii 269-3 [ACOY]
21103
21013
-
Ser
TGA
[ENA]
¡û
>W09300649
ACLN01000016
Bacillota
Lactobacillus iners DSM 13335 [ACLN]
8197
8287
+
Ser
TGA
[ENA]
¡û
>W09300522
ACGO01000035
Bacillota
Lactobacillus paragasseri JV-V03 [ACGO]
2415
2505
+
Ser
TGA
[ENA]
¡û
>W09300529
ACGR01000052
Bacillota
Lactobacillus johnsonii ATCC 33200 [ACGR]
6473
6383
-
Ser
TGA
[ENA]
¡û
>W09300700
ACOZ01000056
Bacillota
Lactobacillus gasseri 202-4 [ACOZ]
6382
6292
-
Ser
TGA
[ENA]
¡û
>W143001725
AUUE01000006
Bacillota
Lactobacillus gasseri 2016 [AUUE]
13463
13373
-
Ser
TGA
[ENA]
¡û
>W143004862
BALQ01000011
Bacillota
Lactobacillus gasseri JCM 1131 [BALQ]
1028
1118
+
Ser
TGA
[ENA]
¡û
>W143005424
CAKE01000031
Bacillota
Lactobacillus hominis CRBIP 24.179 [CAKE]
1732
1822
+
Ser
TGA
[ENA]
¡û
>C143000127
CP006811
Bacillota
Lactobacillus johnsonii N6.2 [CP006811]
1587203
1587113
-
Ser
TGA
[Ensembl]
¡û
>W1910918460
NIBB01000058
Bacillota
Lactobacillus johnsonii UMNLJ54 [NIBB]
1333
1423
+
Ser
TGA
[ENA]
¡û
>W1911569296
PCYR01000039
Bacillota
Lactobacillus sp. UMNPBX19 [PCYR]
6427
6337
-
Ser
TGA
[ENA]
¡û
>W1810005958
BFBY01000016
Bacillota
Lactobacillus rodentium DSM 24759 [BFBY]
7006
6916
-
Ser
TGA
[ENA]
¡û
>W1810190563
PKJY01000005
Bacillota
Lactobacillus jensenii UMB0077 [PKJY]
59560
59470
-
Ser
TGA
[ENA]
¡û
>W1810190604
PKJZ01000005
Bacillota
Lactobacillus jensenii UMB0007 [PKJZ]
4693
4783
+
Ser
TGA
[ENA]
¡û
>C153000226
CP006809
Bacillota
Lactobacillus gasseri [CP006809]
382720
382810
+
Ser
TGA
-
¡û
>W10101936
ACOF01000001
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
5691
5781
+
Ser
TGA
[ENA]
¡û
>W10103244
ACQD01000064
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
53951
53861
-
Ser
TGA
[ENA]
¡û
>W10103484
ACQN01000014
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
5691
5781
+
Ser
TGA
[ENA]
¡û
>W10112272
ADEX01000186
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
110
200
+
Ser
TGA
[ENA]
¡û
>W10300315
ADDU01000012
Bacillota
Lactobacillus gasseri SJ-9E-US [ADDU]
6673
6583
-
Ser
TGA
[ENA]
¡û
>W10300329
ADDY01000037
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
1325
1415
+
Ser
TGA
[ENA]
¡û
>W10300379
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
9150
9060
-
Ser
TGA
[ENA]
¡û
>W10300387
ADHG01000003
Bacillota
Lactobacillus iners AB-1 [ADHG]
8420
8330
-
Ser
TGA
[ENA]
¡û
>C10108420
FN298497
Bacillota
Lactobacillus johnsonii FI9785 [FN298497]
1488045
1487955
-
Ser
TGA
[Ensembl]
¡û
>W11300234
ACWR01000021
Bacillota
Lactobacillus iners 7_1_47FAA [ACWR]
2086
2176
+
Ser
TGA
[ENA]
¡û
>W11300490
ADHG01000003
Bacillota
Lactobacillus iners AB-1 [ADHG]
8420
8330
-
Ser
TGA
[ENA]
¡û
>W11300890
AEHN01000020
Bacillota
Lactobacillus iners LactinV 11V1-d [AEHN]
2797
2887
+
Ser
TGA
[ENA]
¡û
>W11300894
AEHO01000001
Bacillota
Lactobacillus iners LactinV 09V1-c [AEHO]
1039
1129
+
Ser
TGA
[ENA]
¡û
>W11300900
AEHP01000055
Bacillota
Lactobacillus iners LactinV 03V1-b [AEHP]
2576
2666
+
Ser
TGA
[ENA]
¡û
>W11300902
AEHQ01000081
Bacillota
Lactobacillus iners LactinV 01V1-a [AEHQ]
6376
6286
-
Ser
TGA
[ENA]
¡û
>W11300908
AEHR01000015
Bacillota
Lactobacillus iners SPIN 2503V10-D [AEHR]
1560
1650
+
Ser
TGA
[ENA]
¡û
>W11300973
AEKH01000031
Bacillota
Lactobacillus iners LEAF 2053A-b [AEKH]
1533
1623
+
Ser
TGA
[ENA]
¡û
>W11300975
AEKI01000001
Bacillota
Lactobacillus iners LEAF 2052A-d [AEKI]
6463
6373
-
Ser
TGA
[ENA]
¡û
>W11300981
AEKJ01000019
Bacillota
Lactobacillus iners LEAF 2062A-h1 [AEKJ]
2763
2853
+
Ser
TGA
[ENA]
¡û
>W11300985
AEKK01000010
Bacillota
Lactobacillus iners LEAF 3008A-a [AEKK]
2833
2923
+
Ser
TGA
[ENA]
¡û
>W11301082
AEPX01000005
Bacillota
Lactobacillus iners ATCC 55195 [AEPX]
6400
6310
-
Ser
TGA
[ENA]
¡û
>W11301259
AEXJ01000014
Bacillota
Lactobacillus iners UPII 143-D [AEXJ]
1571
1661
+
Ser
TGA
[ENA]
¡û
>W11301263
AEXK01000011
Bacillota
Lactobacillus iners UPII 60-B [AEXK]
1559
1649
+
Ser
TGA
[ENA]
¡û
>W11301273
AEXP01000051
Bacillota
Lactobacillus iners SPIN 1401G [AEXP]
102
12
-
Ser
TGA
[ENA]
¡û
>W11102092
ACOF01000001
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
5691
5781
+
Ser
TGA
[ENA]
¡û
>W11103400
ACQD01000064
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
53951
53861
-
Ser
TGA
[ENA]
¡û
>W11103640
ACQN01000014
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
5691
5781
+
Ser
TGA
[ENA]
¡û
>W11115493
ADEX01000186
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
110
200
+
Ser
TGA
[ENA]
¡û
>C11300316
CP002464
Bacillota
Lactobacillus johnsonii DPC 6026 [CP002464]
1662195
1662105
-
Ser
TGA
[Ensembl]
¡û
>W11300407
ADDU01000012
Bacillota
Lactobacillus gasseri SJ-9E-US [ADDU]
6673
6583
-
Ser
TGA
[ENA]
¡û
>W11300421
ADDY01000037
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
1325
1415
+
Ser
TGA
[ENA]
¡û
>W11300473
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
9150
9060
-
Ser
TGA
[ENA]
¡û
>W1610031437
AYYU01000044
Bacillota
Lactobacillus jensenii DSM 20557 [AYYU]
126
36
-
Ser
TGA
[ENA]
¡û
>W1610036134
AZFB01000010
Bacillota
Lactobacillus psittaci DSM 15354 [AZFB]
38796
38706
-
Ser
TGA
[ENA]
¡û
>W1610039477
AZNM01000027
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
150
60
-
Ser
TGA
[ENA]
¡û
>W1610039503
AZNN01000008
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
4293
4383
+
Ser
TGA
[ENA]
¡û
>W1610039570
AZNO01000006
Bacillota
Lactobacillus jensenii IM11 [AZNO]
76433
76343
-
Ser
TGA
[ENA]
¡û
>W1610039646
AZRC01000026
Bacillota
Lactobacillus jensenii IM59 [AZRC]
5770
5860
+
Ser
TGA
[ENA]
¡û
>W1610039675
AZRD01000012
Bacillota
Lactobacillus jensenii IM1 [AZRD]
4541
4631
+
Ser
TGA
[ENA]
¡û
>W1610039751
AZRE01000046
Bacillota
Lactobacillus jensenii IM3 [AZRE]
37
127
+
Ser
TGA
[ENA]
¡û
>W123001808
AKFQ01000017
Bacillota
Lactobacillus gasseri CECT 5714 [AKFQ]
1029
1119
+
Ser
TGA
[ENA]
¡û
>W1630001100
AYZG01000047
Bacillota
Lactobacillus taiwanensis DSM 21401 [AYZG]
7540
7450
-
Ser
TGA
[ENA]
¡û
>W1630001153
AZCY01000014
Bacillota
Lactobacillus johnsonii ATCC 33200 [AZCY]
1332
1422
+
Ser
TGA
[ENA]
¡û
>W1630001224
AZET01000038
Bacillota
Lactobacillus iners DSM 13335 [AZET]
127
37
-
Ser
TGA
[ENA]
¡û
>W1630017075
LRQD01000080
Bacillota
Lactobacillus gasseri [LRQD]
1061
1151
+
Ser
TGA
[ENA]
¡û
>W1630017640
LSNG01000049
Bacillota
Lactobacillus johnsonii [LSNG]
6578
6488
-
Ser
TGA
[ENA]
¡û
>W1630020434
LZDT01000069
Bacillota
Lactobacillus gasseri [LZDT]
6654
6564
-
Ser
TGA
[ENA]
¡û
>W1730000604
AYZG01000047
Bacillota
Lactobacillus taiwanensis DSM 21401 [AYZG]
7540
7450
-
Ser
TGA
[ENA]
¡û
>W1730000717
AZET01000038
Bacillota
Lactobacillus iners DSM 13335 [AZET]
127
37
-
Ser
TGA
[ENA]
¡û
>W1730019746
LRQD01000080
Bacillota
Lactobacillus gasseri [LRQD]
1061
1151
+
Ser
TGA
[ENA]
¡û
>W1730020344
LSNG01000049
Bacillota
Lactobacillus johnsonii [LSNG]
6578
6488
-
Ser
TGA
[ENA]
¡û
>W1730024208
LZDT01000069
Bacillota
Lactobacillus gasseri [LZDT]
6654
6564
-
Ser
TGA
[ENA]
¡û
>W1730034823
MTZT01000001
Bacillota
Lactobacillus gasseri [MTZT]
1103243
1103153
-
Ser
TGA
[ENA]
¡û
>W1730035005
MUJA01000006
Bacillota
Lactobacillus gasseri [MUJA]
6389
6299
-
Ser
TGA
[ENA]
¡û
>W1730036097
MWIK01000039
Bacillota
Lactobacillus johnsonii [MWIK]
6712
6622
-
Ser
TGA
[ENA]
¡û
>W1710028364
AYYU01000044
Bacillota
Lactobacillus jensenii DSM 20557 [AYYU]
126
36
-
Ser
TGA
[ENA]
¡û
>W1710033173
AZFB01000010
Bacillota
Lactobacillus psittaci DSM 15354 [AZFB]
38796
38706
-
Ser
TGA
[ENA]
¡û
>W1710036622
AZNM01000027
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
150
60
-
Ser
TGA
[ENA]
¡û
>W1710036648
AZNN01000008
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
4293
4383
+
Ser
TGA
[ENA]
¡û
>W1710036715
AZNO01000006
Bacillota
Lactobacillus jensenii IM11 [AZNO]
76433
76343
-
Ser
TGA
[ENA]
¡û
>W1710036791
AZRC01000026
Bacillota
Lactobacillus jensenii IM59 [AZRC]
5770
5860
+
Ser
TGA
[ENA]
¡û
>W1710036820
AZRD01000012
Bacillota
Lactobacillus jensenii IM1 [AZRD]
4541
4631
+
Ser
TGA
[ENA]
¡û
>W1710036896
AZRE01000046
Bacillota
Lactobacillus jensenii IM3 [AZRE]
37
127
+
Ser
TGA
[ENA]
¡û
>W133003977
ASRG01000032
Bacillota
Lactobacillus paragasseri K7 [ASRG]
2414
2504
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK