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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47012 (39 seq.)
>C171127286
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
423867
423955
+
Ser
GCT
-
¡û
>C171127322
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
309896
309808
-
Ser
GCT
-
¡û
>C171127341
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
531832
531920
+
Ser
GCT
-
¡û
>C171127375
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
356736
356648
-
Ser
GCT
-
¡û
>C171127413
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
101445
101357
-
Ser
GCT
-
¡û
>C026067
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
737716
737628
-
Ser
GCT
[Ensembl]
¡û
>w025431
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
277419
277509
+
Ser
GCT
[ENA]
¡û
>w025405
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
410707
410617
-
Ser
GCT
[ENA]
¡û
>w025379
AAZR01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
24418
24328
-
Ser
GCT
[ENA]
¡û
>w025350
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
165478
165568
+
Ser
GCT
[ENA]
¡û
>w024332
AAYQ01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
60260
60170
-
Ser
GCT
[ENA]
¡û
>w024331
AAYP01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
70392
70302
-
Ser
GCT
[ENA]
¡û
>w024295
AAYO01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
129921
130011
+
Ser
GCT
[ENA]
¡û
>w024250
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
177900
177810
-
Ser
GCT
[ENA]
¡û
>w024239
AAYM01000002
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
36152
36062
-
Ser
GCT
[ENA]
¡û
>WENV180225651
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
56100
56188
+
Ser
GCT
[ENA]
¢þ
>WENV180554145
OCJM01008211
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
244
156
-
Ser
GCT
[ENA]
¢þ
>W08002220
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
311675
311590
-
Ser
GCT
[ENA]
¡û
>W08002255
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
310456
310371
-
Ser
GCT
[ENA]
¡û
>W08002273
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
458588
458676
+
Ser
GCT
[ENA]
¡û
>W08002300
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
355232
355320
+
Ser
GCT
[ENA]
¡û
>W08002804
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
445856
445944
+
Ser
GCT
[ENA]
¡û
>C08011092
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
737702
737617
-
Ser
GCT
[Ensembl]
¡û
>W141455563
JFDP01000087
Mycoplasmatota
Ureaplasma diversum NCTC 246 [JFDP]
12920
12832
-
Ser
GCT
[ENA]
¡û
>C191003512
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
560660
560572
-
Ser
GCT
-
¡û
>W141779613
JONZ01000004
Mycoplasmatota
Ureaplasma canigenitalium ATCC 51252 [JONZ]
111062
111150
+
Ser
GCT
[ENA]
¡û
>C09110777
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
860485
860397
-
Ser
GCT
[Ensembl]
¡û
>W1911824652
QZWO01000017
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
1478
1390
-
Ser
GCT
[ENA]
¡û
>W1810735665
QOKT01000027
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
196940
196852
-
Ser
GCT
[ENA]
¡û
>W1810735706
QOKU01000139
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
6701
6613
-
Ser
GCT
[ENA]
¡û
>W1810757256
QPHI01000099
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
12049
11961
-
Ser
GCT
[ENA]
¡û
>W1810757283
QPHJ01000118
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
4113
4025
-
Ser
GCT
[ENA]
¡û
>W1810757307
QPHK01000153
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
6360
6272
-
Ser
GCT
[ENA]
¡û
>C151002375
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
188178
188266
+
Ser
GCT
[Ensembl]
¡û
>C161022168
CP009770
Mycoplasmatota
Ureaplasma diversum ATCC 49782 [CP009770]
557527
557439
-
Ser
GCT
-
¡û
>W121060648
AJFX01000009
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
234885
234797
-
Ser
GCT
[ENA]
¡û
>W121060679
AJFY01000009
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
261130
261042
-
Ser
GCT
[ENA]
¡û
>W121060703
AJFZ01000005
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
254478
254390
-
Ser
GCT
[ENA]
¡û
>W121060730
AJGA01000011
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
257350
257262
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK