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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47016 (12 seq.)
>C171057466
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
1424402
1424315
-
Ser
GGA
-
¡û
>W131169202
AREO01000005
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
356365
356452
+
Ser
GGA
[ENA]
¡û
>WENV180296793
OBJA01002735
[OBJA] soil metagenome; sediment, water from around vicinity
5132
5045
-
Ser
GGA
[ENA]
¢þ
>C181185397
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
432369
432456
+
Ser
GGA
-
¡û
>C191108253
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
1390033
1389946
-
Ser
GGA
-
¡û
>C191122097
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
1606803
1606716
-
Ser
GGA
-
¡û
>C191211052
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
1110681
1110768
+
Ser
GGA
-
¡û
>W09127986
ACLK01000010
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
15059
14972
-
Ser
GGA
[ENA]
¡û
>W1910227431
FNLJ01000014
Bacillota
Traorella massiliensis Marseille-P3110 [FNLJ]
168222
168135
-
Ser
GGA
[ENA]
¡û
>C151007168
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1732749
1732836
+
Ser
GGA
[Ensembl]
¡û
>C11108859
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
431157
431244
+
Ser
GGA
[Ensembl]
¡û
>C161078657
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
1533320
1533233
-
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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