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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470934 (69 seq.)
>WENV181413887
OGCK01163457
[OGCK] hot springs metagenome; hot spring sediment
123
50
-
Gly
TCC
[ENA]
¡û
>WENV170692551
LGOV01013446
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
17656
17729
+
Gly
TCC
[ENA]
¡û
>WENV170695882
LGVE01183894
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
4706
4633
-
Gly
TCC
[ENA]
¡û
>WENV170699871
LGVF01677289
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
589
516
-
Gly
TCC
[ENA]
¡û
>C193002392
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
1495995
1496068
+
Gly
TCC
-
¡û
>C193002393
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
2529491
2529418
-
Gly
TCC
-
¡û
>W09300248
ABXA01000005
Bacillota
Anaerococcus hydrogenalis DSM 7454 [ABXA]
10244
10171
-
Gly
TCC
[ENA]
¡û
>W09300249
ABXA01000034
Bacillota
Anaerococcus hydrogenalis DSM 7454 [ABXA]
28266
28193
-
Gly
TCC
[ENA]
¡û
>W1930007089
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
828
901
+
Gly
TCC
[ENA]
¡û
>W1930007090
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
1283
1356
+
Gly
TCC
[ENA]
¡û
>W1930008587
FXVB02000047
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
10906
10833
-
Gly
TCC
[ENA]
¡û
>W1930008588
FXVB02000062
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
2486
2413
-
Gly
TCC
[ENA]
¡û
>W1930035936
PNHP01000002
Bacillota
Anaerococcus hydrogenalis UMB0204 [PNHP]
331813
331740
-
Gly
TCC
[ENA]
¡û
>W1830018996
QUDF01000007
Bacillota
Eubacterium sp. AM05-23 [QUDF]
254002
254075
+
Gly
TCC
[ENA]
¡û
>W2030002767
CABDWR010000001
Bacillota
Peptoniphilus catoniae P8546 [CABDWR]
483654
483581
-
Gly
TCC
[ENA]
¡û
>W2030005350
CABKRM020000001
Bacillota
Anaerococcus senegalensis [CABKRM]
1206
1279
+
Gly
TCC
[ENA]
¡û
>W2030005351
CABKRM020000002
Bacillota
Anaerococcus senegalensis [CABKRM]
224024
223951
-
Gly
TCC
[ENA]
¡û
>W2030005639
CABMGF010000001
Bacillota
Peptoniphilaceae bacterium [CABMGF]
1682
1755
+
Gly
TCC
[ENA]
¡û
>W2030005640
CABMGF010000015
Bacillota
Peptoniphilaceae bacterium [CABMGF]
146016
145943
-
Gly
TCC
[ENA]
¡û
>W2030005641
CABMGG010000027
Bacillota
Anaerococcus vaginalis [CABMGG]
42430
42357
-
Gly
TCC
[ENA]
¡û
>W2030005642
CABMGG010000060
Bacillota
Anaerococcus vaginalis [CABMGG]
25609
25536
-
Gly
TCC
[ENA]
¡û
>W2030009157
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
828
901
+
Gly
TCC
[ENA]
¡û
>W2030009158
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
1283
1356
+
Gly
TCC
[ENA]
¡û
>W2030009333
FXVB02000047
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
10906
10833
-
Gly
TCC
[ENA]
¡û
>W2030009334
FXVB02000062
Bacillota
Firmicutes bacterium HV4-6-A5C [FXVB]
2486
2413
-
Gly
TCC
[ENA]
¡û
>W2030030380
PNHP01000002
Bacillota
Anaerococcus hydrogenalis UMB0204 [PNHP]
331813
331740
-
Gly
TCC
[ENA]
¡û
>W2030037598
RXYB01000008
Bacillota
Acetobacterium tundrae DSM 917 [RXYB]
21140
21067
-
Gly
TCC
[ENA]
¡û
>W2030052533
VUMO01000006
Bacillota
Eubacteriaceae bacterium RF-744-FAT-4 [VUMO]
52399
52472
+
Gly
TCC
[ENA]
¡û
>C213003202
CP066014
Bacillota
Anaerococcus vaginalis FDAARGOS_988 [CP066014]
183314
183387
+
Gly
TCC
-
¡û
>C213003203
CP066014
Bacillota
Anaerococcus vaginalis FDAARGOS_988 [CP066014]
1367259
1367186
-
Gly
TCC
-
¡û
>C213003433
CP067016
Bacillota
Anaerococcus obesiensis FDAARGOS_989 [CP067016]
798730
798803
+
Gly
TCC
-
¡û
>C213003434
CP067016
Bacillota
Anaerococcus obesiensis FDAARGOS_989 [CP067016]
88986
88913
-
Gly
TCC
-
¡û
>C233006222
CP096649
Bacillota
Fenollaria massiliensis C0061C2 [CP096649]
325509
325582
+
Gly
TCC
-
¡û
>C233006223
CP096649
Bacillota
Fenollaria massiliensis C0061C2 [CP096649]
481549
481622
+
Gly
TCC
-
¡û
>W2130004158
CACRSW010000009
Bacillota
Anaerococcus vaginalis [CACRSW]
1190
1263
+
Gly
TCC
[ENA]
¡û
>W2130004159
CACRSW010000014
Bacillota
Anaerococcus vaginalis [CACRSW]
1394
1467
+
Gly
TCC
[ENA]
¡û
>W2130021825
JADNEI010000011
Bacillota
Anaerococcus vaginalis BSD2780120874b_170522_A4 [JADNEI]
44845
44772
-
Gly
TCC
[ENA]
¡û
>W2130021826
JADNEI010000029
Bacillota
Anaerococcus vaginalis BSD2780120874b_170522_A4 [JADNEI]
1697
1770
+
Gly
TCC
[ENA]
¡û
>W2130032012
JAGGLJ010000002
Bacillota
Peptoniphilus stercorisuis DSM 27563 [JAGGLJ]
148
221
+
Gly
TCC
[ENA]
¡û
>W2130032013
JAGGLJ010000031
Bacillota
Peptoniphilus stercorisuis DSM 27563 [JAGGLJ]
1365
1438
+
Gly
TCC
[ENA]
¡û
>W10300187
ACXU01000002
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
890
963
+
Gly
TCC
[ENA]
¡û
>W10300188
ACXU01000015
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
111285
111212
-
Gly
TCC
[ENA]
¡û
>W10300299
ADCS01000059
Bacillota
Peptoniphilus sp. oral taxon 386 oral taxon 386 str. F0131 [ADCS]
29308
29235
-
Gly
TCC
[ENA]
¡û
>W10300312
ADDO01000045
Bacillota
Peptoniphilus lacrimalis 315-B [ADDO]
658
731
+
Gly
TCC
[ENA]
¡û
>W10300533
AEAA01000112
Bacillota
Peptoniphilus sp. oral taxon 836 oral taxon 836 str. F0141 [AEAA]
657
730
+
Gly
TCC
[ENA]
¡û
>W2130044988
WJBB01000006
Bacillota
Acetobacterium tundrae DER-2019 [WJBB]
21140
21067
-
Gly
TCC
[ENA]
¡û
>W2130044999
WJBC01000019
Bacillota
Acetobacterium fimetarium DER-2019 [WJBC]
14045
13972
-
Gly
TCC
[ENA]
¡û
>W2130045004
WJBE01000021
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
36207
36280
+
Gly
TCC
[ENA]
¡û
>C243008551
OW968186
Bacillota
Fenollaria sporofastidiosus [OW968186]
841465
841538
+
Gly
TCC
-
¡û
>C243008553
OW968186
Bacillota
Fenollaria sporofastidiosus [OW968186]
2004
1931
-
Gly
TCC
-
¡û
>W11300260
ACXU01000002
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
890
963
+
Gly
TCC
[ENA]
¡û
>W11300261
ACXU01000015
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
111285
111212
-
Gly
TCC
[ENA]
¡û
>W11300384
ADCS01000059
Bacillota
Peptoniphilus sp. oral taxon 386 oral taxon 386 str. F0131 [ADCS]
29308
29235
-
Gly
TCC
[ENA]
¡û
>W11300403
ADDO01000045
Bacillota
Peptoniphilus lacrimalis 315-B [ADDO]
658
731
+
Gly
TCC
[ENA]
¡û
>W11300746
AEAA01000112
Bacillota
Peptoniphilus sp. oral taxon 836 oral taxon 836 str. F0141 [AEAA]
657
730
+
Gly
TCC
[ENA]
¡û
>W11301266
AEXN01000005
Bacillota
Anaerococcus hydrogenalis ACS-025-V-Sch4 [AEXN]
49898
49825
-
Gly
TCC
[ENA]
¡û
>W11301267
AEXN01000014
Bacillota
Anaerococcus hydrogenalis ACS-025-V-Sch4 [AEXN]
87667
87594
-
Gly
TCC
[ENA]
¡û
>W1630010686
LGGM01000008
Bacillota
Clostridiales bacterium 38_11 [LGGM]
374
447
+
Gly
TCC
[ENA]
¡û
>W1730003643
FAVH01000003
Bacillota
Anaerococcus rubeinfantis MT16 [FAVH]
4461
4534
+
Gly
TCC
[ENA]
¡û
>W1730003644
FAVH01000003
Bacillota
Anaerococcus rubeinfantis MT16 [FAVH]
439643
439716
+
Gly
TCC
[ENA]
¡û
>W1730008895
FNOU01000002
Bacillota
Eubacterium barkeri [FNOU]
46245
46172
-
Gly
TCC
[ENA]
¡û
>W1730009990
FOWI01000001
Bacillota
Eubacterium callanderi [FOWI]
700800
700873
+
Gly
TCC
[ENA]
¡û
>W1730010354
FQXI01000013
Bacillota
Anaerosphaera aminiphila DSM 21120 [FQXI]
54363
54290
-
Gly
TCC
[ENA]
¡û
>W1730010364
FQXR01000021
Bacillota
Sporanaerobacter acetigenes DSM 13106 [FQXR]
204
277
+
Gly
TCC
[ENA]
¡û
>W1730012988
LGGM01000008
Bacillota
Clostridiales bacterium 38_11 [LGGM]
374
447
+
Gly
TCC
[ENA]
¡û
>W1730020974
LTSR01000056
Bacillota
Anaerococcus sp. HMSC075B03 [LTSR]
105
32
-
Gly
TCC
[ENA]
¡û
>W1730020975
LTSR01000058
Bacillota
Anaerococcus sp. HMSC075B03 [LTSR]
599
672
+
Gly
TCC
[ENA]
¡û
>W1730020976
LTSR01000062
Bacillota
Anaerococcus sp. HMSC075B03 [LTSR]
639
712
+
Gly
TCC
[ENA]
¡û
>W133003531
ARKX01000020
Bacillota
Peptoniphilus lacrimalis DSM 7455 [ARKX]
23348
23275
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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