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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47159 (117 seq.)
>W1710860353
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
706243
706158
-
Ser
TGA
[ENA]
¡û
>W1710862341
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
474356
474441
+
Ser
TGA
[ENA]
¡û
>W1710865467
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
474325
474410
+
Ser
TGA
[ENA]
¡û
>W1710870303
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
1056621
1056534
-
Ser
TGA
[ENA]
¡û
>W1710872328
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
593429
593344
-
Pseudo
TGA
[ENA]
¡û
>W1710873960
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
598898
598813
-
Pseudo
TGA
[ENA]
¡û
>W1710874377
LMNO01000001
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
245451
245364
-
Ser
TGA
[ENA]
¡û
>W1710874502
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
834412
834499
+
Ser
TGA
[ENA]
¡û
>W1710874592
LMNT01000001
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
950404
950491
+
Ser
TGA
[ENA]
¡û
>W1710875733
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
209419
209506
+
Ser
TGA
[ENA]
¡û
>W1710876842
LMPP01000001
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
245214
245127
-
Ser
TGA
[ENA]
¡û
>W1711018576
LQXA01000048
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
21918
21831
-
Ser
TGA
[ENA]
¡û
>W1711357165
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
1721720
1721807
+
Ser
TGA
[ENA]
¡û
>W1711357205
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
589679
589766
+
Ser
TGA
[ENA]
¡û
>W1711357284
MDHD01000414
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
10817
10904
+
Ser
TGA
[ENA]
¡û
>W1711357332
MDHE01000440
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
14416
14329
-
Ser
TGA
[ENA]
¡û
>W1711357357
MDHF01000157
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
10836
10923
+
Ser
TGA
[ENA]
¡û
>W1711357393
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
2159707
2159794
+
Ser
TGA
[ENA]
¡û
>W1711357430
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
1567262
1567349
+
Ser
TGA
[ENA]
¡û
>W1711357474
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
163528
163615
+
Ser
TGA
[ENA]
¡û
>W1711357519
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
481690
481777
+
Ser
TGA
[ENA]
¡û
>W1711357588
MDHK01000055
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
12911
12824
-
Ser
TGA
[ENA]
¡û
>W1711357609
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
622494
622581
+
Ser
TGA
[ENA]
¡û
>W1711357654
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
599860
599947
+
Ser
TGA
[ENA]
¡û
>W1711360704
MDJW01000008
Actinomycetota
Clavibacter michiganensis [MDJW]
171524
171437
-
Ser
TGA
[ENA]
¡û
>W1711360763
MDJX01000266
Actinomycetota
Clavibacter michiganensis [MDJX]
14580
14667
+
Ser
TGA
[ENA]
¡û
>W1711360773
MDJY01000003
Actinomycetota
Clavibacter michiganensis [MDJY]
19783
19696
-
Ser
TGA
[ENA]
¡û
>W1711360849
MDJZ01000016
Actinomycetota
Clavibacter michiganensis [MDJZ]
369869
369956
+
Ser
TGA
[ENA]
¡û
>W1711747216
MUKN01000040
Actinomycetota
Rathayibacter sp. VKM Ac-2630 [MUKN]
20697
20784
+
Ser
TGA
[ENA]
¡û
>C006136
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
602300
602387
+
Ser
TGA
[Ensembl]
¡û
>w013979
AAOB01000012
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
33857
33944
+
Ser
TGA
[ENA]
¡û
>WENV180017034
FSWJ01000677
[FSWJ] metagenome; soil
3488
3403
-
Ser
TGA
[ENA]
¢þ
>WENV180024116
FTIF01050752
[FTIF] metagenome; soil
331
416
+
Ser
TGA
[ENA]
¢þ
>W141212783
AZQZ01000012
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
307917
307832
-
Ser
TGA
[ENA]
¡û
>C08003535
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
466519
466606
+
Ser
TGA
[Ensembl]
¡û
>C181048892
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
2848216
2848130
-
Ser
TGA
-
¡û
>C181048914
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
450752
450838
+
Ser
TGA
-
¡û
>C191056199
CP028129
Actinomycetota
Rathayibacter rathayi DSM 7485 [CP028129]
266713
266799
+
Ser
TGA
-
¡û
>C191056271
CP028130
Actinomycetota
Rathayibacter iranicus NCCPB 2253 [CP028130]
2072521
2072434
-
Ser
TGA
-
¡û
>C191056499
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
109617
109704
+
Ser
TGA
-
¡û
>W1910839670
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2664548
2664634
+
Ser
TGA
[ENA]
¡û
>W1910839726
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1288287
1288201
-
Ser
TGA
[ENA]
¡û
>W1910839754
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
2981957
2981871
-
Ser
TGA
[ENA]
¡û
>W1910839821
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
476921
476835
-
Ser
TGA
[ENA]
¡û
>W1911497485
OCNL01000003
Actinomycetota
Rathayibacter rathayi VKM Ac-1601 [OCNL]
291414
291500
+
Ser
TGA
[ENA]
¡û
>W1911748138
QWDZ01000014
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
14317
14231
-
Ser
TGA
[ENA]
¡û
>W1911748175
QWEA01000057
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
5608
5694
+
Ser
TGA
[ENA]
¡û
>W1911748215
QWEB01000014
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
13848
13762
-
Ser
TGA
[ENA]
¡û
>W1911748259
QWEC01000009
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
12595
12680
+
Ser
TGA
[ENA]
¡û
>W1911748301
QWED01000003
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
9962
10048
+
Ser
TGA
[ENA]
¡û
>W1911748346
QWEE01000013
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
12651
12737
+
Ser
TGA
[ENA]
¡û
>W1911749564
QWGS01000016
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
5548
5462
-
Ser
TGA
[ENA]
¡û
>W1911749610
QWGT01000013
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
14994
15080
+
Ser
TGA
[ENA]
¡û
>W1911749657
QWGU01000038
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
6625
6711
+
Ser
TGA
[ENA]
¡û
>W1911749692
QWGV01000006
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
9815
9901
+
Ser
TGA
[ENA]
¡û
>W1810168996
PJJS01000038
Actinomycetota
Cryobacterium sp. M96 [PJJS]
2356
2271
-
Ser
TGA
[ENA]
¡û
>W1810169096
PJJU01000047
Actinomycetota
Cryobacterium sp. M25 [PJJU]
77756
77841
+
Ser
TGA
[ENA]
¡û
>W1810169135
PJJV01000061
Actinomycetota
Cryobacterium sp. M23 [PJJV]
57688
57773
+
Ser
TGA
[ENA]
¡û
>W1810277240
PSTR01000005
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
155701
155615
-
Ser
TGA
[ENA]
¡û
>W1810277291
PSTS01000013
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
45343
45429
+
Ser
TGA
[ENA]
¡û
>W1810277402
PSTV01000008
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
32107
32193
+
Ser
TGA
[ENA]
¡û
>W1810277448
PSTW01000010
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
32072
32158
+
Ser
TGA
[ENA]
¡û
>W1810277774
PSUD01000006
Actinomycetota
Rathayibacter rathayi AY2B6 [PSUD]
50115
50201
+
Ser
TGA
[ENA]
¡û
>W1810277991
PSUI01000012
Actinomycetota
Rathayibacter rathayi AY2A9 [PSUI]
66138
66052
-
Ser
TGA
[ENA]
¡û
>W1810278026
PSUJ01000006
Actinomycetota
Rathayibacter rathayi AY2A5 [PSUJ]
66122
66036
-
Ser
TGA
[ENA]
¡û
>W1810278161
PSUM01000010
Actinomycetota
Rathayibacter tritici ATCC 11402 [PSUM]
62331
62245
-
Ser
TGA
[ENA]
¡û
>W1810278220
PSUN01000014
Actinomycetota
Rathayibacter tritici GSPB 2752 [PSUN]
62291
62205
-
Ser
TGA
[ENA]
¡û
>W1810278268
PSUO01000016
Actinomycetota
Rathayibacter tritici GSPB 2748 [PSUO]
2396
2482
+
Ser
TGA
[ENA]
¡û
>W1810278295
PSUP01000011
Actinomycetota
Rathayibacter rathayi ICMP 2576 [PSUP]
66136
66050
-
Ser
TGA
[ENA]
¡û
>W1810278325
PSUQ01000004
Actinomycetota
Rathayibacter rathayi ICMP 2572 [PSUQ]
58768
58854
+
Ser
TGA
[ENA]
¡û
>W1810278620
PSUW01000032
Actinomycetota
Rathayibacter sp. AY1G9 [PSUW]
15843
15930
+
Ser
TGA
[ENA]
¡û
>W1810279248
PSVL01000016
Actinomycetota
Rathayibacter sp. AY1E5 [PSVL]
15880
15967
+
Ser
TGA
[ENA]
¡û
>W1810279504
PSVR01000013
Actinomycetota
Rathayibacter rathayi AY1D8 [PSVR]
50130
50216
+
Ser
TGA
[ENA]
¡û
>W1810279901
PSWA01000026
Actinomycetota
Rathayibacter rathayi AY1C8 [PSWA]
16779
16865
+
Ser
TGA
[ENA]
¡û
>W1810280230
PSWI01000010
Actinomycetota
Rathayibacter rathayi AY1B9 [PSWI]
22844
22758
-
Ser
TGA
[ENA]
¡û
>W1810280518
PSWP01000004
Actinomycetota
Rathayibacter rathayi AY1A8 [PSWP]
66135
66049
-
Ser
TGA
[ENA]
¡û
>W1810280664
PSWS01000040
Actinomycetota
Rathayibacter tritici DSM 7486 [PSWS]
8814
8900
+
Ser
TGA
[ENA]
¡û
>W1810280707
PSWT01000035
Actinomycetota
Rathayibacter tritici ICMP 2628 [PSWT]
8967
9054
+
Ser
TGA
[ENA]
¡û
>W1810281669
PSXP01000004
Actinomycetota
Rathayibacter rathayi Z015 [PSXP]
50085
50171
+
Ser
TGA
[ENA]
¡û
>W1810281755
PSXR01000015
Actinomycetota
Rathayibacter rathayi CS6 [PSXR]
8831
8917
+
Ser
TGA
[ENA]
¡û
>W1810281827
PSXS01000030
Actinomycetota
Rathayibacter iranicus DSM 7484 [PSXS]
49329
49242
-
Ser
TGA
[ENA]
¡û
>W1810281869
PSXT01000036
Actinomycetota
Rathayibacter iranicus TRS5 [PSXT]
49327
49240
-
Ser
TGA
[ENA]
¡û
>W1810281912
PSXU01000043
Actinomycetota
Rathayibacter iranicus FH154 [PSXU]
49341
49254
-
Ser
TGA
[ENA]
¡û
>W1810281965
PSXV01000046
Actinomycetota
Rathayibacter sp. AY1A1 [PSXV]
20917
21004
+
Ser
TGA
[ENA]
¡û
>W1810281996
PSXW01000013
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
9057
8970
-
Ser
TGA
[ENA]
¡û
>W1810282069
PSXY01000004
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
119745
119659
-
Ser
TGA
[ENA]
¡û
>W1810452309
PZPL01000001
Actinomycetota
Rathayibacter caricis DSM 15933 [PZPL]
1982569
1982655
+
Ser
TGA
[ENA]
¡û
>W1810577907
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
721058
721143
+
Ser
TGA
[ENA]
¡û
>W1810595370
QGDV01000003
Actinomycetota
Rathayibacter iranicus VKM Ac-1602 [QGDV]
218670
218757
+
Ser
TGA
[ENA]
¡û
>W1810860776
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
650186
650100
-
Ser
TGA
[ENA]
¡û
>C151075630
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
485737
485824
+
Ser
TGA
[Ensembl]
¡û
>C151095691
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
412778
412865
+
Ser
TGA
-
¡û
>SRA1003138
SRR002326.234438
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
233
148
-
Ser
TGA
[SRA]
>W1511352449
JROD01000011
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
20195
20282
+
Ser
TGA
[ENA]
¡û
>W1511524519
JYFC01000006
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
23584
23671
+
Ser
TGA
[ENA]
¡û
>W1511570071
LAKL01000003
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
13940
14027
+
Ser
TGA
[ENA]
¡û
>C161089138
CP015515
Actinomycetota
Rathayibacter tritici NCPPB 1953 [CP015515]
596790
596877
+
Ser
TGA
[Ensembl]
¡û
>C131019523
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
470327
470414
+
Ser
TGA
[Ensembl]
¡û
>W1610630618
LIIN01000057
Actinomycetota
Rathayibacter tanaceti [LIIN]
15501
15588
+
Ser
TGA
[ENA]
¡û
>W1610722699
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
706243
706158
-
Ser
TGA
[ENA]
¡û
>W1610724687
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
474356
474441
+
Ser
TGA
[ENA]
¡û
>W1610727813
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
474325
474410
+
Ser
TGA
[ENA]
¡û
>W1610732649
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
1056621
1056534
-
Ser
TGA
[ENA]
¡û
>W1610734674
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
593429
593344
-
Pseudo
TGA
[ENA]
¡û
>W1610736306
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
598898
598813
-
Pseudo
TGA
[ENA]
¡û
>W1610736723
LMNO01000001
Actinomycetota
Rathayibacter sp. Leaf294 [LMNO]
245451
245364
-
Ser
TGA
[ENA]
¡û
>W1610736848
LMNR01000001
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
834412
834499
+
Ser
TGA
[ENA]
¡û
>W1610736938
LMNT01000001
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
950404
950491
+
Ser
TGA
[ENA]
¡û
>W1610738079
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
209419
209506
+
Ser
TGA
[ENA]
¡û
>W1610739188
LMPP01000001
Actinomycetota
Rathayibacter sp. Leaf185 [LMPP]
245214
245127
-
Ser
TGA
[ENA]
¡û
>W1610867052
LQXA01000048
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
21918
21831
-
Ser
TGA
[ENA]
¡û
>WENV078458
AAGA01016367
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
296
209
-
Ser
TGA
[ENA]
>W1710602478
FUYG01000001
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
242292
242379
+
Ser
TGA
[ENA]
¡û
>W1710608509
FXAY01000001
Actinomycetota
Agreia pratensis [FXAY]
865452
865365
-
Ser
TGA
[ENA]
¡û
>W1710608926
FXBM01000001
Actinomycetota
Rathayibacter oskolensis VKM Ac-2121 [FXBM]
452542
452629
+
Ser
TGA
[ENA]
¡û
>W1710609318
FXWI01000004
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
63098
63011
-
Ser
TGA
[ENA]
¡û
>W1710761757
LIIN01000057
Actinomycetota
Rathayibacter tanaceti [LIIN]
15501
15588
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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