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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47159 (138 seq.)
>WENV180242595
OBDJ01000001
[OBDJ] human gut metagenome; human gut
139022
139110
+
Ser
TGA
[ENA]
¡û
>WENV180245486
OBDM01044088
[OBDM] human gut metagenome; human gut
159
71
-
Ser
TGA
[ENA]
¡û
>WENV180547936
OCIU01162526
[OCIU] human gut metagenome; human gut
264
176
-
Ser
TGA
[ENA]
¡û
>WENV180564184
OCLD01033909
[OCLD] human gut metagenome; human gut
139
51
-
Ser
TGA
[ENA]
¡û
>WENV180617674
OCQA01032455
[OCQA] human gut metagenome; human gut
953
1041
+
Ser
TGA
[ENA]
¡û
>WENV180761363
ODHZ01009548
[ODHZ] human metagenome; G_DNA_Stool
3491
3579
+
Ser
TGA
[ENA]
¡û
>WENV180894142
ODMR01038554
[ODMR] human metagenome; G_DNA_Stool
130
42
-
Ser
TGA
[ENA]
¡û
>WENV181015188
ODWP01012063
[ODWP] human metagenome; G_DNA_Stool
1959
1871
-
Ser
TGA
[ENA]
¡û
>WENV181147589
OEHT01000234
[OEHT] human metagenome; G_DNA_Stool
73316
73228
-
Ser
TGA
[ENA]
¡û
>WENV181172791
OEIV010988303
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
213
125
-
Ser
TGA
[ENA]
¡û
>WENV181355899
OFMT01012068
[OFMT] human gut metagenome; human gut
65
153
+
Ser
TGA
[ENA]
¡û
>WENV181525462
OGHJ01000285
[OGHJ] metagenome; Human gut stool
78307
78219
-
Ser
TGA
[ENA]
¡û
>WENV181636798
OGNB01000191
[OGNB] metagenome; Human gut stool
12377
12465
+
Ser
TGA
[ENA]
¡û
>WENV181637896
OGNC01000003
[OGNC] metagenome; Human gut stool
50733
50821
+
Ser
TGA
[ENA]
¡û
>WENV181683038
OGOU01052091
[OGOU] human gut metagenome; faeces
538
450
-
Ser
TGA
[ENA]
¡û
>WENV181684469
OGOV01009808
[OGOV] human gut metagenome; faeces
322
234
-
Ser
TGA
[ENA]
¡û
>WENV181691507
OGOZ01009175
[OGOZ] human gut metagenome; faeces
2516
2428
-
Ser
TGA
[ENA]
¡û
>WENV181701727
OGPH01004203
[OGPH] human gut metagenome; faeces
166
78
-
Ser
TGA
[ENA]
¡û
>WENV181720429
OGPU01013410
[OGPU] human gut metagenome; faeces
1077
1165
+
Ser
TGA
[ENA]
¡û
>WENV181739959
OGQJ01001740
[OGQJ] human gut metagenome; faeces
16559
16471
-
Ser
TGA
[ENA]
¡û
>WENV181744600
OGQM01001291
[OGQM] human gut metagenome; faeces
5333
5421
+
Ser
TGA
[ENA]
¡û
>WENV181750030
OGQP01000672
[OGQP] human gut metagenome; faeces
17133
17045
-
Ser
TGA
[ENA]
¡û
>WENV181765075
OGQY01003100
[OGQY] human gut metagenome; faeces
5711
5623
-
Ser
TGA
[ENA]
¡û
>WENV181828189
OGUN01000003
[OGUN] human gut metagenome; faeces
16163
16251
+
Ser
TGA
[ENA]
¡û
>WENV181866804
OGWV01016253
[OGWV] human gut metagenome; faeces
249
161
-
Ser
TGA
[ENA]
¡û
>WENV181888563
OGXM01005737
[OGXM] human gut metagenome; faeces
647
733
+
Ser
TGA
[ENA]
¡û
>WENV181895175
OGXR01004160
[OGXR] human gut metagenome; faeces
4993
4905
-
Ser
TGA
[ENA]
¡û
>WENV181897244
OGXT01000015
[OGXT] human gut metagenome; faeces
93381
93469
+
Ser
TGA
[ENA]
¡û
>WENV181909831
OGYC01000940
[OGYC] human gut metagenome; faeces
3980
4068
+
Ser
TGA
[ENA]
¡û
>WENV181929205
OGYO01013368
[OGYO] human gut metagenome; faeces
2679
2767
+
Ser
TGA
[ENA]
¡û
>WENV181979204
OHAF01000536
[OHAF] human gut metagenome; faeces
22587
22499
-
Ser
TGA
[ENA]
¡û
>WENV181985122
OHAJ01000789
[OHAJ] human gut metagenome; faeces
96
8
-
Ser
TGA
[ENA]
¡û
>WENV181995192
OHAT01001208
[OHAT] human gut metagenome; faeces
20483
20395
-
Ser
TGA
[ENA]
¡û
>WENV182003380
OHBD01000003
[OHBD] human gut metagenome; feces
212647
212559
-
Ser
TGA
[ENA]
¡û
>WENV182004632
OHBE01000263
[OHBE] human gut metagenome; faeces
19412
19324
-
Ser
TGA
[ENA]
¡û
>WENV182011671
OHBM01002410
[OHBM] human gut metagenome; faeces
6552
6464
-
Ser
TGA
[ENA]
¡û
>WENV182018026
OHBW01015210
[OHBW] human gut metagenome; feces
808
894
+
Ser
TGA
[ENA]
¡û
>WENV182029064
OHCQ01000006
[OHCQ] human gut metagenome; feces
53477
53565
+
Ser
TGA
[ENA]
¡û
>WENV182038001
OHDE01000185
[OHDE] human gut metagenome; feces
29735
29823
+
Ser
TGA
[ENA]
¡û
>WENV182041829
OHDN01000081
[OHDN] human gut metagenome; feces
66802
66714
-
Ser
TGA
[ENA]
¡û
>WENV182062746
OHEV01003701
[OHEV] human gut metagenome; feces
126
38
-
Ser
TGA
[ENA]
¡û
>WENV182066938
OHFC01039519
[OHFC] human gut metagenome; feces
316
228
-
Ser
TGA
[ENA]
¡û
>WENV182068342
OHFG01000106
[OHFG] human gut metagenome; feces
72674
72586
-
Ser
TGA
[ENA]
¡û
>WENV182072342
OHFM01030126
[OHFM] human gut metagenome; feces
663
751
+
Ser
TGA
[ENA]
¡û
>WENV182079525
OHGG01003583
[OHGG] human gut metagenome; feces
3740
3828
+
Ser
TGA
[ENA]
¡û
>WENV182083991
OHGQ01000059
[OHGQ] human gut metagenome; feces
6177
6265
+
Ser
TGA
[ENA]
¡û
>WENV182088749
OHGZ01000114
[OHGZ] human gut metagenome; feces
24806
24718
-
Ser
TGA
[ENA]
¡û
>WENV182097009
OHHO01002477
[OHHO] human gut metagenome; feces
1112
1024
-
Ser
TGA
[ENA]
¡û
>WENV182112365
OHIU01005049
[OHIU] human gut metagenome; feces
1103
1191
+
Ser
TGA
[ENA]
¡û
>WENV182112816
OHIX01000017
[OHIX] human gut metagenome; feces
117858
117770
-
Ser
TGA
[ENA]
¡û
>WENV182116736
OHJC01004548
[OHJC] human gut metagenome; feces
636
724
+
Ser
TGA
[ENA]
¡û
>WENV182121291
OHJK01011318
[OHJK] human gut metagenome; feces
903
991
+
Ser
TGA
[ENA]
¡û
>WENV182135072
OHKI01006754
[OHKI] human gut metagenome; feces
2600
2688
+
Ser
TGA
[ENA]
¡û
>WENV182137276
OHKL01000509
[OHKL] human gut metagenome; feces
19948
19860
-
Ser
TGA
[ENA]
¡û
>WENV182147586
OHLE01000001
[OHLE] human gut metagenome; feces
48212
48300
+
Ser
TGA
[ENA]
¡û
>WENV182148326
OHLF01000006
[OHLF] human gut metagenome; feces
118487
118399
-
Ser
TGA
[ENA]
¡û
>WENV182168197
OHMS01035850
[OHMS] human gut metagenome; feces
395
483
+
Ser
TGA
[ENA]
¡û
>WENV182190163
OHOP01003552
[OHOP] human gut metagenome; feces
27
115
+
Ser
TGA
[ENA]
¡û
>WENV182192998
OHPB01000407
[OHPB] human gut metagenome; feces
397
485
+
Ser
TGA
[ENA]
¡û
>WENV182202669
OHPO01027589
[OHPO] human gut metagenome; feces
953
865
-
Ser
TGA
[ENA]
¡û
>WENV182211230
OHQF01000082
[OHQF] human gut metagenome; feces
66802
66714
-
Ser
TGA
[ENA]
¡û
>WENV182226467
OHRF01000114
[OHRF] human gut metagenome; feces
4030
4118
+
Ser
TGA
[ENA]
¡û
>WENV182244011
OHSI01013908
[OHSI] human gut metagenome; feces
760
672
-
Ser
TGA
[ENA]
¡û
>WENV182255492
OHTD01000433
[OHTD] human gut metagenome; feces
3372
3284
-
Ser
TGA
[ENA]
¡û
>WENV182257362
OHTF01016349
[OHTF] human gut metagenome; feces
1064
1152
+
Ser
TGA
[ENA]
¡û
>WENV182286581
OHVO01052938
[OHVO] human gut metagenome; feces
222
310
+
Ser
TGA
[ENA]
¡û
>WENV182318857
OHYG01000121
[OHYG] human gut metagenome; feces
1253
1165
-
Ser
TGA
[ENA]
¡û
>WENV182342985
OIAK01000136
[OIAK] human gut metagenome; feces
21325
21237
-
Ser
TGA
[ENA]
¡û
>WENV182522373
OIWS01000333
[OIWS] human gut metagenome; faeces
59220
59132
-
Ser
TGA
[ENA]
¡û
>WENV182609780
OJJV01022356
[OJJV] metagenome; faeces
253
165
-
Ser
TGA
[ENA]
¡û
>WENV182614380
OJKC01000035
[OJKC] metagenome; faeces
47524
47612
+
Ser
TGA
[ENA]
¡û
>WENV182616881
OJKC01074209
[OJKC] metagenome; faeces
375
463
+
Ser
TGA
[ENA]
¡û
>WENV182635648
OJKY01106591
[OJKY] metagenome; faeces
438
350
-
Ser
TGA
[ENA]
¡û
>WENV182668172
OJNI01052096
[OJNI] human gut metagenome; feces
469
557
+
Ser
TGA
[ENA]
¡û
>WENV182678847
OJNS01053617
[OJNS] human gut metagenome; human gut
231
143
-
Ser
TGA
[ENA]
¡û
>WENV182699382
OJON01021928
[OJON] human gut metagenome; human gut
1122
1210
+
Ser
TGA
[ENA]
¡û
>WENV182722125
OJPP01029331
[OJPP] human gut metagenome; stool sample
642
554
-
Ser
TGA
[ENA]
¡û
>WENV182752665
OJRB01034160
[OJRB] human gut metagenome; stool sample
222
310
+
Ser
TGA
[ENA]
¡û
>WENV182756570
OJRG01001916
[OJRG] human gut metagenome; stool sample
6205
6117
-
Ser
TGA
[ENA]
¡û
>WENV182867622
OKRS01000026
[OKRS] human gut metagenome; faeces
53378
53290
-
Ser
TGA
[ENA]
¡û
>WENV182886547
OKSD01000331
[OKSD] human gut metagenome; faeces
14508
14420
-
Ser
TGA
[ENA]
¡û
>WENV182902673
OKSW01037004
[OKSW] human gut metagenome; feces
97
9
-
Ser
TGA
[ENA]
¡û
>WENV182911259
OKTL01000062
[OKTL] human gut metagenome; feces
7512
7600
+
Ser
TGA
[ENA]
¡û
>WENV182914877
OKTR01000121
[OKTR] human gut metagenome; feces
3628
3716
+
Ser
TGA
[ENA]
¡û
>WENV182932893
OKUV01000140
[OKUV] human gut metagenome; feces
28330
28242
-
Ser
TGA
[ENA]
¡û
>WENV182938948
OKVE01005418
[OKVE] human gut metagenome; human gut
2856
2944
+
Ser
TGA
[ENA]
¡û
>WENV182942394
OKVH01000576
[OKVH] human gut metagenome; human gut
14417
14329
-
Ser
TGA
[ENA]
¡û
>WENV182945573
OKVK01000399
[OKVK] human gut metagenome; human gut
3776
3864
+
Ser
TGA
[ENA]
¡û
>WENV182968668
OKXB01003894
[OKXB] human gut metagenome; human gut
5524
5436
-
Ser
TGA
[ENA]
¡û
>WENV183072044
OLIT01000133
[OLIT] human gut metagenome; feces
69651
69563
-
Ser
TGA
[ENA]
¡û
>WENV183085186
OLJF01002002
[OLJF] metagenome; faeces
603
515
-
Ser
TGA
[ENA]
¡û
>WENV183099635
OLNF01012105
[OLNF] human gut metagenome; faeces
2615
2703
+
Ser
TGA
[ENA]
¡û
>WENV183128171
OLNZ01002836
[OLNZ] human gut metagenome; faeces
9098
9186
+
Ser
TGA
[ENA]
¡û
>WENV183128788
OLNZ01020190
[OLNZ] human gut metagenome; faeces
59
147
+
Ser
TGA
[ENA]
¡û
>WENV183144161
OLOL01000868
[OLOL] human gut metagenome; faeces
379
291
-
Ser
TGA
[ENA]
¡û
>WENV183169458
OLPA01003546
[OLPA] human gut metagenome; faeces
4066
3978
-
Ser
TGA
[ENA]
¡û
>WENV183176391
OLPF01006986
[OLPF] human gut metagenome; faeces
3208
3296
+
Ser
TGA
[ENA]
¡û
>WENV183197017
OLPU01010347
[OLPU] human gut metagenome; faeces
379
291
-
Ser
TGA
[ENA]
¡û
>WENV183206522
OLQA01001242
[OLQA] human gut metagenome; faeces
18972
18884
-
Ser
TGA
[ENA]
¡û
>WENV183211520
OLQC01090670
[OLQC] human gut metagenome; faeces
383
471
+
Ser
TGA
[ENA]
¡û
>WENV183244202
OLRD01011051
[OLRD] human gut metagenome; faeces
1443
1531
+
Ser
TGA
[ENA]
¡û
>WENV183251981
OLRI01000338
[OLRI] human gut metagenome; faeces
53403
53315
-
Ser
TGA
[ENA]
¡û
>WENV183270061
OLRV01002993
[OLRV] human gut metagenome; faeces
5223
5311
+
Ser
TGA
[ENA]
¡û
>WENV183275632
OLRZ01000120
[OLRZ] human gut metagenome; faeces
63605
63517
-
Ser
TGA
[ENA]
¡û
>WENV183278208
OLSA01008984
[OLSA] human gut metagenome; faeces
2729
2817
+
Ser
TGA
[ENA]
¡û
>WENV183306078
OLSX01010098
[OLSX] human gut metagenome; faeces
5003
4915
-
Ser
TGA
[ENA]
¡û
>WENV183335129
OLWG01000042
[OLWG] human gut metagenome; feces
54625
54713
+
Ser
TGA
[ENA]
¡û
>WENV183336964
OLWI01000092
[OLWI] human gut metagenome; feces
73682
73594
-
Ser
TGA
[ENA]
¡û
>WENV183340245
OLWL01005327
[OLWL] human gut metagenome; feces
4016
4104
+
Ser
TGA
[ENA]
¡û
>WENV183341962
OLWN01000637
[OLWN] human gut metagenome; feces
15038
15126
+
Ser
TGA
[ENA]
¡û
>WENV183342779
OLWO01000090
[OLWO] human gut metagenome; feces
73682
73594
-
Ser
TGA
[ENA]
¡û
>WENV183343611
OLWP01000090
[OLWP] human gut metagenome; feces
73682
73594
-
Ser
TGA
[ENA]
¡û
>WENV183347324
OLWT01004911
[OLWT] human gut metagenome; feces
4031
4119
+
Ser
TGA
[ENA]
¡û
>WENV183353372
OLXB01000044
[OLXB] human gut metagenome; feces
85452
85364
-
Ser
TGA
[ENA]
¡û
>WENV183353615
OLXB01000390
[OLXB] human gut metagenome; feces
697
609
-
Ser
TGA
[ENA]
¡û
>WENV183358352
OLXG01045404
[OLXG] human gut metagenome; feces
699
611
-
Ser
TGA
[ENA]
¡û
>WENV183359128
OLXH01008215
[OLXH] human gut metagenome; feces
583
495
-
Ser
TGA
[ENA]
¡û
>WENV183362415
OLXK01006953
[OLXK] human gut metagenome; feces
302
214
-
Ser
TGA
[ENA]
¡û
>WENV183363283
OLXL01000567
[OLXL] human gut metagenome; feces
4463
4375
-
Ser
TGA
[ENA]
¡û
>WENV183365312
OLXN01004791
[OLXN] human gut metagenome; feces
4122
4208
+
Ser
TGA
[ENA]
¡û
>WENV183374679
OLXZ01008382
[OLXZ] human gut metagenome; feces
2494
2582
+
Ser
TGA
[ENA]
¡û
>WENV183383142
OLYM01000226
[OLYM] human gut metagenome; feces
12626
12714
+
Ser
TGA
[ENA]
¡û
>WENV183384097
OLYN01000809
[OLYN] human gut metagenome; feces
4564
4476
-
Ser
TGA
[ENA]
¡û
>WENV183428634
OMBO01000098
[OMBO] human gut metagenome; feces
4503
4591
+
Ser
TGA
[ENA]
¡û
>WENV183445524
OMCP01030896
[OMCP] human gut metagenome; feces
272
184
-
Ser
TGA
[ENA]
¡û
>WENV183451903
OMDC01000520
[OMDC] human gut metagenome; feces
296
208
-
Ser
TGA
[ENA]
¡û
>WENV183471063
OMEK01026696
[OMEK] human gut metagenome; feces
113
25
-
Ser
TGA
[ENA]
¡û
>WENV183480667
OMFJ01001272
[OMFJ] human gut metagenome; feces
1464
1376
-
Ser
TGA
[ENA]
¡û
>WENV183484701
OMFP01000534
[OMFP] human gut metagenome; feces
296
208
-
Ser
TGA
[ENA]
¡û
>WENV183601349
OODJ01000901
[OODJ] human gut metagenome; human gut
3859
3947
+
Ser
TGA
[ENA]
¡û
>WENV183633398
OOIG01000483
[OOIG] human gut metagenome; human gut
174
86
-
Ser
TGA
[ENA]
¡û
>WENV183643747
OQVP01000057
[OQVP] human gut metagenome; human gut
31839
31751
-
Ser
TGA
[ENA]
¡û
>WENV183645030
OQVQ01000611
[OQVQ] human gut metagenome; human gut
13983
14071
+
Ser
TGA
[ENA]
¡û
>WENV183654597
OQWD01000038
[OQWD] human gut metagenome; human gut
28940
28852
-
Ser
TGA
[ENA]
¡û
>WENV183656587
OQWE01056415
[OQWE] human gut metagenome; human gut
440
528
+
Ser
TGA
[ENA]
¡û
>WENV183775887
PPYF01073342
[PPYF] human gut metagenome; stool from patient with Crohn's disease
354
266
-
Ser
TGA
[ENA]
¡û
>WENV183786053
PPYF01303548
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5316
5404
+
Ser
TGA
[ENA]
¡û
>W2110247786
JACRSR010000004
Bacillota
Christensenellaceae bacterium NSJ-53 [JACRSR]
172272
172184
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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