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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47202 (23 seq.)
>W131001369
AGYD01000005
Campylobacterota
Campylobacter ureolyticus ACS-301-V-Sch3b [AGYD]
103387
103474
+
Ser
TGA
[ENA]
¡û
>W131171364
ARGD01000036
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
313152
313065
-
Ser
TGA
[ENA]
¡û
>W1711326840
MBGA01000028
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus [MBGA]
7593
7506
-
Ser
TGA
[ENA]
¡û
>W1711350410
MCRK01000003
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRK]
7558
7471
-
Ser
TGA
[ENA]
¡û
>W1711350468
MCRL01000021
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRL]
77694
77607
-
Ser
TGA
[ENA]
¡û
>W1711351859
MDCT01000013
Campylobacterota
Campylobacter pinnipediorum RM18812 [MDCT]
7431
7344
-
Ser
TGA
[ENA]
¡û
>W1711351891
MDCU01000016
Campylobacterota
Campylobacter pinnipediorum RM18813 [MDCU]
32817
32904
+
Ser
TGA
[ENA]
¡û
>W1711351918
MDCV01000003
Campylobacterota
Campylobacter pinnipediorum RM18906 [MDCV]
78033
77946
-
Ser
TGA
[ENA]
¡û
>C171017222
CP012546
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17260 [CP012546]
340784
340871
+
Ser
TGA
-
¡û
>C171017266
CP012547
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17261 [CP012547]
310633
310720
+
Ser
TGA
-
¡û
>C171017310
CP012548
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17262 [CP012548]
305495
305582
+
Ser
TGA
-
¡û
>C171055128
CP017018
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M302/10/6 [CP017018]
395917
396004
+
Ser
TGA
-
¡û
>WENV181000367
ODVU01016296
[ODVU] human metagenome; G_DNA_Anterior nares
80
167
+
Ser
TGA
[ENA]
¢þ
>WENV181717043
OGPS01094430
[OGPS] human gut metagenome; faeces
362
449
+
Ser
TGA
[ENA]
¢þ
>WENV181804523
OGSF01002051
[OGSF] human gut metagenome; fecal sample 3 from infant 5
142
55
-
Ser
TGA
[ENA]
¢þ
>WENV181806469
OGSK01010360
[OGSK] human gut metagenome; fecal sample 2 from infant 5
257
170
-
Ser
TGA
[ENA]
¢þ
>WENV181807225
OGSN01013918
[OGSN] human gut metagenome; fecal sample 7 from infant 8
436
523
+
Ser
TGA
[ENA]
¢þ
>WENV181811243
OGSY01000351
[OGSY] human gut metagenome; fecal sample 5 from infant 8
7448
7535
+
Ser
TGA
[ENA]
¢þ
>WENV181821451
OGUE01004218
[OGUE] human gut metagenome; fecal sample 1 from infant 5
335
422
+
Ser
TGA
[ENA]
¢þ
>W141463429
JFJK01000012
Campylobacterota
Campylobacter ureolyticus [JFJK]
32437
32350
-
Ser
TGA
[ENA]
¡û
>W1910756194
MLAQ01000003
Campylobacterota
Helicobacter sp. 12S02232-10 [MLAQ]
84446
84533
+
Ser
TGA
[ENA]
¡û
>W1810187705
PKHU01000003
Campylobacterota
Campylobacter ureolyticus UMB0112 [PKHU]
209209
209122
-
Ser
TGA
[ENA]
¡û
>C151092523
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
1419884
1419797
-
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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