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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.472124 (111 seq.)
>W1711117686
LUDJ01000010
Bacteroidota
Riemerella anatipestifer [LUDJ]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711117728
LUDK01000008
Bacteroidota
Riemerella anatipestifer [LUDK]
41023
41096
+
Cys
GCA
[ENA]
¡û
>W1711117763
LUDL01000010
Bacteroidota
Riemerella anatipestifer [LUDL]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711117811
LUDM01000012
Bacteroidota
Riemerella anatipestifer [LUDM]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711117847
LUDN01000017
Bacteroidota
Riemerella anatipestifer [LUDN]
3002
3075
+
Cys
GCA
[ENA]
¡û
>W1711117918
LUDP01000012
Bacteroidota
Riemerella anatipestifer [LUDP]
41021
41094
+
Cys
GCA
[ENA]
¡û
>W1711117955
LUDQ01000010
Bacteroidota
Riemerella anatipestifer [LUDQ]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1711118027
LUDS01000011
Bacteroidota
Riemerella anatipestifer [LUDS]
39825
39898
+
Cys
GCA
[ENA]
¡û
>W1711118099
LUDU01000010
Bacteroidota
Riemerella anatipestifer [LUDU]
6457
6384
-
Cys
GCA
[ENA]
¡û
>W131169917
ARFD01000007
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
42975
42904
-
Cys
GCA
[ENA]
¡û
>W131180722
ARNI01000012
Bacteroidota
Dyadobacter beijingensis DSM 21582 [ARNI]
354609
354682
+
Cys
GCA
[ENA]
¡û
>W1711385141
MEDT01000132
Bacteroidota
Cytophagaceae bacterium SCN 52-12 [MEDT]
12197
12126
-
Cys
GCA
[ENA]
¡û
>W1711503987
MKUD01000002
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
201654
201583
-
Cys
GCA
[ENA]
¡û
>C171015073
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
722632
722561
-
Cys
GCA
-
¡û
>C171104431
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
1649617
1649688
+
Cys
GCA
-
¡û
>WENV180296272
OBJA01000162
[OBJA] soil metagenome; sediment, water from around vicinity
19744
19815
+
Cys
GCA
[ENA]
¡û
>WENV183707721
PDWI01010177
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3809
3880
+
Cys
GCA
[ENA]
¡û
>WENV170371472
CETS01013376
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4835
4764
-
Cys
GCA
[ENA]
¡û
>WENV170389261
CETZ01264372
[CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5086
5157
+
Cys
GCA
[ENA]
¡û
>WENV170432345
CEUS01083845
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
253
324
+
Cys
GCA
[ENA]
¡û
>WENV170443654
CEUW01252292
[CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1347
1274
-
Cys
GCA
[ENA]
¡û
>WENV170840212
MDSZ01199516
[MDSZ] marine metagenome; seawater
5733
5806
+
Cys
GCA
[ENA]
¡û
>WENV170984673
MWVV01388075
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
315
242
-
Cys
GCA
[ENA]
¡û
>WENV170995977
MWWF01107758
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
366
437
+
Cys
GCA
[ENA]
¡û
>C181226370
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
902471
902400
-
Cys
GCA
-
¡û
>C191062428
CP028923
Bacteroidota
Mangrovivirga cuniculi R1DC9 [CP028923]
1682660
1682589
-
Cys
GCA
-
¡û
>C191185735
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
1013474
1013403
-
Cys
GCA
-
¡û
>W09108938
ABTS01000001
Bacteroidota
Dyadobacter fermentans DSM 18053 [ABTS]
321933
322006
+
Cys
GCA
[ENA]
¡û
>W141731393
JNJB01000008
Bacteroidota
Dyadobacter crusticola DSM 16708 [JNJB]
215520
215449
-
Cys
GCA
[ENA]
¡û
>W1911615653
PPEC01000012
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
6483
6412
-
Cys
GCA
[ENA]
¡û
>W1911701523
QNUL01000013
Bacteroidota
Dyadobacter sp. RS19 [QNUL]
125174
125103
-
Cys
GCA
[ENA]
¡û
>W1911766797
QXED01000001
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
1116498
1116427
-
Cys
GCA
[ENA]
¡û
>W1810191553
PKKR01000004
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
252244
252315
+
Cys
GCA
[ENA]
¡û
>W1810392821
PYAS01000005
Bacteroidota
Dyadobacter jiangsuensis DSM 29057 [PYAS]
182797
182726
-
Cys
GCA
[ENA]
¡û
>W1810583128
QEWX01000063
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
5237
5166
-
Cys
GCA
[ENA]
¡û
>W1810695403
QLNL01000007
Bacteroidota
Chitinophaga ginsengisegetis 28_1 [QLNL]
100764
100835
+
Cys
GCA
[ENA]
¡û
>W1810721960
QNTR01000007
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
100764
100835
+
Cys
GCA
[ENA]
¡û
>C151018461
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
1687142
1687215
+
Cys
GCA
-
¡û
>C151025749
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
887828
887755
-
Cys
GCA
[Ensembl]
¡û
>C151068622
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
6336530
6336456
-
Cys
GCA
[Ensembl]
¡û
>W2010169509
CABFVU010000006
Bacteroidota
Chitinophaga polysaccharea CSUR P9684 [CABFVU]
117512
117583
+
Cys
GCA
[ENA]
¡û
>W2010213326
CABHMS010000002
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
804179
804250
+
Cys
GCA
[ENA]
¡û
>W2010213385
CABHMT010000004
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
397081
397152
+
Cys
GCA
[ENA]
¡û
>W2010770598
LEKU01000025
Bacteroidota
Riemerella anatipestifer NJ-1 [LEKU]
6186
6115
-
Cys
GCA
[ENA]
¡û
>W2011208594
PPEC01000012
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
6483
6412
-
Cys
GCA
[ENA]
¡û
>W2011278063
QNUL01000013
Bacteroidota
Dyadobacter sp. RS19 [QNUL]
125174
125103
-
Cys
GCA
[ENA]
¡û
>W2011325670
QXFP01000002
Bacteroidota
Riemerella anatipestifer RCAD0416 [QXFP]
500500
500571
+
Cys
GCA
[ENA]
¡û
>W2011326481
QXHO01000018
Bacteroidota
Riemerella anatipestifer CCUG25001 [QXHO]
22261
22332
+
Cys
GCA
[ENA]
¡û
>W2011326625
QXHS01000017
Bacteroidota
Riemerella anatipestifer CCUG25008 [QXHS]
22261
22332
+
Cys
GCA
[ENA]
¡û
>W2011329706
QXQH01000006
Bacteroidota
Riemerella anatipestifer RCAD0427 [QXQH]
6288
6217
-
Cys
GCA
[ENA]
¡û
>W2011329748
QXQI01000003
Bacteroidota
Riemerella anatipestifer RCAD0422 [QXQI]
239023
239094
+
Cys
GCA
[ENA]
¡û
>W2011329860
QXQL01000012
Bacteroidota
Riemerella anatipestifer RCAD0282 [QXQL]
6339
6268
-
Cys
GCA
[ENA]
¡û
>W2011495138
RWKT01000024
Bacteroidota
Riemerella anatipestifer RCAD0388 [RWKT]
828
899
+
Cys
GCA
[ENA]
¡û
>W2011532768
SBLB01000007
Bacteroidota
Spirosoma sp. TY50 [SBLB]
343436
343507
+
Cys
GCA
[ENA]
¡û
>W2011635121
SMJU01000009
Bacteroidota
Cytophaga sp. DMA-K-7a DMA-k-7a [SMJU]
94521
94450
-
Cys
GCA
[ENA]
¡û
>W2011703725
SWFP01000008
Bacteroidota
Dyadobacter sp. QTA69 [SWFP]
81750
81679
-
Cys
GCA
[ENA]
¡û
>W2012079792
VLIM01000012
Bacteroidota
Riemerella anatipestifer RCAD0146 [VLIM]
6473
6402
-
Cys
GCA
[ENA]
¡û
>W2012141133
VTOL01000005
Bacteroidota
Dyadobacter sp. 3J3 [VTOL]
102999
103070
+
Cys
GCA
[ENA]
¡û
>W2012412137
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
5777673
5777744
+
Cys
GCA
[ENA]
¡û
>W2012412190
WPIN01000010
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
129517
129588
+
Cys
GCA
[ENA]
¡û
>W2110023652
BMGE01000006
Bacteroidota
Dyadobacter sediminis CGMCC 1.12895 [BMGE]
277364
277435
+
Cys
GCA
[ENA]
¡û
>W2110025993
BMIA01000005
Bacteroidota
Dyadobacter endophyticus CGMCC 1.15288 [BMIA]
181812
181740
-
Cys
GCA
[ENA]
¡û
>W2110269407
JACVFB010000001
Bacteroidota
Chitinophaga varians KACC 19415 [JACVFB]
206970
207041
+
Cys
GCA
[ENA]
¡û
>W2110282928
JACWZY010000002
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
251279
251352
+
Cys
GCA
[ENA]
¡û
>W2110283031
JACXAA010000006
Bacteroidota
Spirosoma validum BT704 [JACXAA]
169793
169722
-
Cys
GCA
[ENA]
¡û
>W2110324606
JADICS010000006
Bacteroidota
Riemerella anatipestifer 1879 [JADICS]
65992
65921
-
Cys
GCA
[ENA]
¡û
>W2110535118
JAGFUB010000011
Bacteroidota
Riemerella anatipestifer 20190301Y1-H2 [JAGFUB]
40968
41039
+
Cys
GCA
[ENA]
¡û
>W2110535154
JAGFUC010000011
Bacteroidota
Riemerella anatipestifer 20190213Y2-2 [JAGFUC]
6348
6277
-
Cys
GCA
[ENA]
¡û
>W2110535262
JAGFUF010000012
Bacteroidota
Riemerella anatipestifer 20190401E1-1 [JAGFUF]
6127
6056
-
Cys
GCA
[ENA]
¡û
>W2110535372
JAGFUI010000013
Bacteroidota
Riemerella anatipestifer 20190308E3-1 [JAGFUI]
41731
41802
+
Cys
GCA
[ENA]
¡û
>W2110535406
JAGFUJ010000016
Bacteroidota
Riemerella anatipestifer 20190305E1-H1 [JAGFUJ]
4990
4919
-
Cys
GCA
[ENA]
¡û
>W2110535432
JAGFUK010000006
Bacteroidota
Riemerella anatipestifer 20170614E1-3 [JAGFUK]
124129
124200
+
Cys
GCA
[ENA]
¡û
>W2110535517
JAGFUM010000035
Bacteroidota
Riemerella anatipestifer 20190103J1-S1 [JAGFUM]
777
848
+
Cys
GCA
[ENA]
¡û
>W2110535624
JAGFUP010000012
Bacteroidota
Riemerella anatipestifer 20160923HP [JAGFUP]
6348
6277
-
Cys
GCA
[ENA]
¡û
>C201120992
CP043006
Bacteroidota
Chitinophaga sp. XS-30 [CP043006]
3663066
3663137
+
Cys
GCA
-
¡û
>C201162049
CP045564
Bacteroidota
Riemerella anatipestifer RA-LZ01 [CP045564]
898658
898587
-
Cys
GCA
-
¡û
>C211039309
CP031845
Bacteroidota
Riemerella anatipestifer RCAD0392 [CP031845]
1782157
1782086
-
Cys
GCA
-
¡û
>C211112041
CP056775
Bacteroidota
Dyadobacter sp. Q3-56 [CP056775]
4999341
4999412
+
Cys
GCA
-
¡û
>C211303107
CP072185
Bacteroidota
Riemerella anatipestifer 20190109E1-1 [CP072185]
882538
882467
-
Cys
GCA
-
¡û
>C211303147
CP072186
Bacteroidota
Riemerella anatipestifer 20190403E1-1 [CP072186]
890971
890900
-
Cys
GCA
-
¡û
>C211303235
CP072190
Bacteroidota
Riemerella anatipestifer 20190305E2-2 [CP072190]
931878
931807
-
Cys
GCA
-
¡û
>C211303267
CP072196
Bacteroidota
Riemerella anatipestifer 20190604J2-1 [CP072196]
1042313
1042242
-
Cys
GCA
-
¡û
>W2110734774
JAJDFB010000065
Bacteroidota
Riemerella anatipestifer xi1 [JAJDFB]
6372
6301
-
Cys
GCA
[ENA]
¡û
>C211390673
CP081924
Bacteroidota
Riemerella anatipestifer 20190212E1-4 [CP081924]
864867
864796
-
Cys
GCA
-
¡û
>C211390753
CP081927
Bacteroidota
Riemerella anatipestifer 20160930R-3 [CP081927]
852733
852662
-
Cys
GCA
-
¡û
>C231130675
CP073239
Bacteroidota
Riemerella anatipestifer RCAD0416 [CP073239]
1365460
1365531
+
Cys
GCA
-
¡û
>C231172656
CP081929
Bacteroidota
Riemerella anatipestifer 20190213Y1-1 [CP081929]
890243
890172
-
Cys
GCA
-
¡û
>C231172742
CP081934
Bacteroidota
Riemerella anatipestifer 20190507E1-1 [CP081934]
1074719
1074648
-
Cys
GCA
-
¡û
>C231172763
CP081937
Bacteroidota
Riemerella anatipestifer 20190609E1-1 [CP081937]
1567205
1567276
+
Cys
GCA
-
¡û
>C231249071
CP088073
Bacteroidota
Riemerella anatipestifer RCAD0122 [CP088073]
903516
903445
-
Cys
GCA
-
¡û
>C231484539
CP104076
Bacteroidota
Riemerella anatipestifer SCVM0004 [CP104076]
952458
952387
-
Cys
GCA
-
¡û
>C231638320
CP121209
Bacteroidota
Riemerella anatipestifer RCAD0125 [CP121209]
888972
888901
-
Cys
GCA
-
¡û
>C241156315
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
5294480
5294409
-
Cys
GCA
-
¡û
>C241171864
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
496454
496383
-
Cys
GCA
-
¡û
>C241187939
CP094374
Bacteroidota
Riemerella anatipestifer RCAD0509 [CP094374]
1090130
1090059
-
Cys
GCA
-
¡û
>C241188606
CP095465
Bacteroidota
Riemerella anatipestifer RCAD0510 [CP095465]
1090120
1090049
-
Cys
GCA
-
¡û
>C241369514
CP142016
Bacteroidota
Riemerella anatipestifer 59RAST107 [CP142016]
1122459
1122388
-
Cys
GCA
-
¡û
>C11118485
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
1409273
1409346
+
Cys
GCA
[Ensembl]
¡û
>C131006670
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
1123365
1123436
+
Cys
GCA
[Ensembl]
¡û
>W1610929045
LUDJ01000010
Bacteroidota
Riemerella anatipestifer [LUDJ]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929087
LUDK01000008
Bacteroidota
Riemerella anatipestifer [LUDK]
41023
41096
+
Cys
GCA
[ENA]
¡û
>W1610929122
LUDL01000010
Bacteroidota
Riemerella anatipestifer [LUDL]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929170
LUDM01000012
Bacteroidota
Riemerella anatipestifer [LUDM]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929206
LUDN01000017
Bacteroidota
Riemerella anatipestifer [LUDN]
3002
3075
+
Cys
GCA
[ENA]
¡û
>W1610929277
LUDP01000012
Bacteroidota
Riemerella anatipestifer [LUDP]
41021
41094
+
Cys
GCA
[ENA]
¡û
>W1610929314
LUDQ01000010
Bacteroidota
Riemerella anatipestifer [LUDQ]
41016
41089
+
Cys
GCA
[ENA]
¡û
>W1610929386
LUDS01000011
Bacteroidota
Riemerella anatipestifer [LUDS]
39825
39898
+
Cys
GCA
[ENA]
¡û
>W1610929458
LUDU01000010
Bacteroidota
Riemerella anatipestifer [LUDU]
6457
6384
-
Cys
GCA
[ENA]
¡û
>W1710514146
FNAS01000006
Bacteroidota
Riemerella columbipharyngis [FNAS]
17227
17300
+
Cys
GCA
[ENA]
¡û
>W1710541608
FNYL01000010
Bacteroidota
Dyadobacter sp. SG02 [FNYL]
264630
264557
-
Cys
GCA
[ENA]
¡û
>W1710603401
FUZA01000006
Bacteroidota
Dyadobacter psychrophilus [FUZA]
148511
148438
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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