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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.472469 (147 seq.)
>W1712039231
NFJN01000011
Actinomycetota
Gordonibacter urolithinfaciens [NFJN]
76025
76100
+
Phe
GAA
[ENA]
¡û
>C171131207
LT821227
Actinomycetota
Phoenicibacter congonensis Marseille-P3241 [LT821227]
1409422
1409497
+
Phe
GAA
-
¡û
>C171131371
LT827128
Actinomycetota
Gordonibacter massiliensis [LT827128]
2665783
2665858
+
Phe
GAA
-
¡û
>WENV180188374
OAWW01061221
[OAWW] human gut metagenome; faeces
122
47
-
Phe
GAA
[ENA]
¢þ
>WENV180238842
OBDA01048083
[OBDA] human gut metagenome; human gut
334
259
-
Phe
GAA
[ENA]
¢þ
>WENV180526909
OCHI01104797
[OCHI] human gut metagenome; human gut
294
369
+
Phe
GAA
[ENA]
¢þ
>WENV180529036
OCHJ01067271
[OCHJ] human gut metagenome; human gut
410
485
+
Phe
GAA
[ENA]
¢þ
>WENV180533081
OCHL01014563
[OCHL] human gut metagenome; human gut
1514
1589
+
Phe
GAA
[ENA]
¢þ
>WENV181116522
OEFA01013016
[OEFA] human gut metagenome; human gut
593
518
-
Phe
GAA
[ENA]
¢þ
>WENV181420289
OGCN01001709
[OGCN] human gut metagenome; human gut
16248
16173
-
Phe
GAA
[ENA]
¢þ
>WENV181439987
OGDN01000416
[OGDN] human gut metagenome; human gut
13813
13888
+
Phe
GAA
[ENA]
¢þ
>WENV181509465
OGGQ01005370
[OGGQ] metagenome; Human gut stool
5569
5494
-
Phe
GAA
[ENA]
¢þ
>WENV181662972
OGOH01003077
[OGOH] human gut metagenome; faeces
7394
7469
+
Phe
GAA
[ENA]
¢þ
>WENV181666384
OGOJ01058581
[OGOJ] human gut metagenome; faeces
419
494
+
Phe
GAA
[ENA]
¢þ
>WENV181669340
OGOL01022590
[OGOL] human gut metagenome; faeces
1140
1215
+
Phe
GAA
[ENA]
¢þ
>WENV181673032
OGOO01000782
[OGOO] human gut metagenome; faeces
7388
7463
+
Phe
GAA
[ENA]
¢þ
>WENV181678954
OGOR01014867
[OGOR] human gut metagenome; faeces
487
412
-
Phe
GAA
[ENA]
¢þ
>WENV181690071
OGOY01014646
[OGOY] human gut metagenome; faeces
528
603
+
Phe
GAA
[ENA]
¢þ
>WENV181693255
OGPA01005114
[OGPA] human gut metagenome; faeces
3394
3319
-
Phe
GAA
[ENA]
¢þ
>WENV181694847
OGPB01050831
[OGPB] human gut metagenome; faeces
147
222
+
Phe
GAA
[ENA]
¢þ
>WENV181695529
OGPC01002125
[OGPC] human gut metagenome; faeces
6122
6047
-
Phe
GAA
[ENA]
¢þ
>WENV181696874
OGPD01007027
[OGPD] human gut metagenome; faeces
689
614
-
Phe
GAA
[ENA]
¢þ
>WENV181705587
OGPK01013102
[OGPK] human gut metagenome; faeces
37
112
+
Phe
GAA
[ENA]
¢þ
>WENV181710167
OGPN01026313
[OGPN] human gut metagenome; faeces
843
918
+
Phe
GAA
[ENA]
¢þ
>WENV181714605
OGPR01003220
[OGPR] human gut metagenome; faeces
2511
2436
-
Phe
GAA
[ENA]
¢þ
>WENV181720263
OGPU01007477
[OGPU] human gut metagenome; faeces
4124
4049
-
Phe
GAA
[ENA]
¢þ
>WENV181722133
OGPV01025984
[OGPV] human gut metagenome; faeces
889
964
+
Phe
GAA
[ENA]
¢þ
>WENV181722850
OGPW01000428
[OGPW] human gut metagenome; faeces
3696
3771
+
Phe
GAA
[ENA]
¢þ
>WENV181729769
OGQB01021110
[OGQB] human gut metagenome; faeces
535
460
-
Phe
GAA
[ENA]
¢þ
>WENV181733979
OGQE01042192
[OGQE] human gut metagenome; faeces
325
250
-
Phe
GAA
[ENA]
¢þ
>WENV181740404
OGQJ01006739
[OGQJ] human gut metagenome; faeces
2232
2157
-
Phe
GAA
[ENA]
¢þ
>WENV181742452
OGQK01059790
[OGQK] human gut metagenome; faeces
144
69
-
Phe
GAA
[ENA]
¢þ
>WENV181742995
OGQL01001808
[OGQL] human gut metagenome; faeces
597
672
+
Phe
GAA
[ENA]
¢þ
>WENV181746808
OGQN01004592
[OGQN] human gut metagenome; faeces
5659
5734
+
Phe
GAA
[ENA]
¢þ
>WENV181752283
OGQQ01002858
[OGQQ] human gut metagenome; faeces
3664
3589
-
Phe
GAA
[ENA]
¢þ
>WENV181756912
OGQT01004942
[OGQT] human gut metagenome; faeces
612
687
+
Phe
GAA
[ENA]
¢þ
>WENV181758499
OGQU01001442
[OGQU] human gut metagenome; faeces
14212
14137
-
Phe
GAA
[ENA]
¢þ
>WENV181779517
OGRI01008138
[OGRI] human gut metagenome; faeces
654
729
+
Phe
GAA
[ENA]
¢þ
>WENV181780607
OGRJ01001661
[OGRJ] human gut metagenome; faeces
3694
3769
+
Phe
GAA
[ENA]
¢þ
>WENV181788533
OGRO01001695
[OGRO] human gut metagenome; faeces
6447
6522
+
Phe
GAA
[ENA]
¢þ
>WENV181803521
OGSD01019906
[OGSD] human gut metagenome; faeces
389
314
-
Phe
GAA
[ENA]
¢þ
>WENV181817001
OGTL01039392
[OGTL] human gut metagenome; faeces
465
390
-
Phe
GAA
[ENA]
¢þ
>WENV181832790
OGUP01081695
[OGUP] human gut metagenome; faeces
253
328
+
Phe
GAA
[ENA]
¢þ
>WENV181883956
OGXI01023386
[OGXI] human gut metagenome; faeces
1097
1172
+
Phe
GAA
[ENA]
¢þ
>WENV181890509
OGXN01051678
[OGXN] human gut metagenome; faeces
118
43
-
Phe
GAA
[ENA]
¢þ
>WENV181918340
OGYH01002853
[OGYH] human gut metagenome; faeces
9719
9644
-
Phe
GAA
[ENA]
¢þ
>WENV181919898
OGYI01004944
[OGYI] human gut metagenome; faeces
4013
4088
+
Phe
GAA
[ENA]
¢þ
>WENV181941790
OGYY01009709
[OGYY] human gut metagenome; faeces
3478
3403
-
Phe
GAA
[ENA]
¢þ
>WENV182017346
OHBV01029873
[OHBV] human gut metagenome; feces
50
125
+
Phe
GAA
[ENA]
¢þ
>WENV182027940
OHCN01042576
[OHCN] human gut metagenome; feces
527
452
-
Phe
GAA
[ENA]
¢þ
>WENV182271959
OHUG01001634
[OHUG] human gut metagenome; feces
4088
4163
+
Phe
GAA
[ENA]
¢þ
>WENV182278500
OHUT01000428
[OHUT] human gut metagenome; feces
3325
3400
+
Phe
GAA
[ENA]
¢þ
>WENV182355320
OIBP01000966
[OIBP] human gut metagenome; feces
8351
8276
-
Phe
GAA
[ENA]
¢þ
>WENV182519139
OIWP01004854
[OIWP] human gut metagenome; faeces
6415
6490
+
Phe
GAA
[ENA]
¢þ
>WENV182539030
OIXV01001022
[OIXV] human gut metagenome; faeces
13262
13187
-
Phe
GAA
[ENA]
¢þ
>WENV182682766
OJNW01009140
[OJNW] human gut metagenome; human gut
414
339
-
Phe
GAA
[ENA]
¢þ
>WENV182691095
OJOE01041953
[OJOE] human gut metagenome; stool sample
87
12
-
Phe
GAA
[ENA]
¢þ
>WENV182890149
OKSF01007611
[OKSF] human gut metagenome; faeces
1296
1221
-
Phe
GAA
[ENA]
¢þ
>WENV183047846
OLGF01019074
[OLGF] human gut metagenome; faeces
2212
2287
+
Phe
GAA
[ENA]
¢þ
>WENV183086931
OLJF01105980
[OLJF] metagenome; faeces
278
203
-
Phe
GAA
[ENA]
¢þ
>WENV183095588
OLND01003025
[OLND] human gut metagenome; faeces
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV183101152
OLNG01004728
[OLNG] human gut metagenome; faeces
2758
2833
+
Phe
GAA
[ENA]
¢þ
>WENV183102552
OLNI01001103
[OLNI] human gut metagenome; faeces
387
312
-
Phe
GAA
[ENA]
¢þ
>WENV183109724
OLNN01018026
[OLNN] human gut metagenome; faeces
277
202
-
Phe
GAA
[ENA]
¢þ
>WENV183111470
OLNO01023192
[OLNO] human gut metagenome; faeces
677
752
+
Phe
GAA
[ENA]
¢þ
>WENV183113128
OLNP01006163
[OLNP] human gut metagenome; faeces
2492
2417
-
Phe
GAA
[ENA]
¢þ
>WENV183116575
OLNR01000216
[OLNR] human gut metagenome; faeces
13914
13989
+
Phe
GAA
[ENA]
¢þ
>WENV183118658
OLNT01000077
[OLNT] human gut metagenome; faeces
9236
9161
-
Phe
GAA
[ENA]
¢þ
>WENV183120517
OLNU01002415
[OLNU] human gut metagenome; faeces
6863
6938
+
Phe
GAA
[ENA]
¢þ
>WENV183131011
OLOA01010129
[OLOA] human gut metagenome; faeces
1690
1765
+
Phe
GAA
[ENA]
¢þ
>WENV183133679
OLOC01000406
[OLOC] human gut metagenome; faeces
13816
13891
+
Phe
GAA
[ENA]
¢þ
>WENV183136822
OLOG01000243
[OLOG] human gut metagenome; faeces
40379
40454
+
Phe
GAA
[ENA]
¢þ
>WENV183139494
OLOI01000742
[OLOI] human gut metagenome; faeces
17554
17479
-
Phe
GAA
[ENA]
¢þ
>WENV183143557
OLOK01070077
[OLOK] human gut metagenome; faeces
334
259
-
Phe
GAA
[ENA]
¢þ
>WENV183147453
OLON01000253
[OLON] human gut metagenome; faeces
14248
14173
-
Phe
GAA
[ENA]
¢þ
>WENV183147968
OLON01006155
[OLON] human gut metagenome; faeces
708
633
-
Phe
GAA
[ENA]
¢þ
>WENV183150871
OLOP01010569
[OLOP] human gut metagenome; faeces
577
652
+
Phe
GAA
[ENA]
¢þ
>WENV183157806
OLOT01005131
[OLOT] human gut metagenome; faeces
1395
1470
+
Phe
GAA
[ENA]
¢þ
>WENV183160051
OLOU01041124
[OLOU] human gut metagenome; faeces
101
26
-
Phe
GAA
[ENA]
¢þ
>WENV183166134
OLOX01044133
[OLOX] human gut metagenome; faeces
683
608
-
Phe
GAA
[ENA]
¢þ
>WENV183167451
OLOZ01000214
[OLOZ] human gut metagenome; faeces
6619
6544
-
Phe
GAA
[ENA]
¢þ
>WENV183169065
OLPA01000917
[OLPA] human gut metagenome; faeces
11458
11383
-
Phe
GAA
[ENA]
¢þ
>WENV183170949
OLPB01004129
[OLPB] human gut metagenome; faeces
10
85
+
Phe
GAA
[ENA]
¢þ
>WENV183173390
OLPD01003274
[OLPD] human gut metagenome; faeces
4005
3930
-
Phe
GAA
[ENA]
¢þ
>WENV183174558
OLPE01002303
[OLPE] human gut metagenome; faeces
4648
4573
-
Phe
GAA
[ENA]
¢þ
>WENV183188539
OLPP01002159
[OLPP] human gut metagenome; faeces
1896
1971
+
Phe
GAA
[ENA]
¢þ
>WENV183189213
OLPQ01000865
[OLPQ] human gut metagenome; faeces
4241
4316
+
Phe
GAA
[ENA]
¢þ
>WENV183189330
OLPQ01001476
[OLPQ] human gut metagenome; faeces
3923
3848
-
Phe
GAA
[ENA]
¢þ
>WENV183194316
OLPS01058164
[OLPS] human gut metagenome; faeces
592
517
-
Phe
GAA
[ENA]
¢þ
>WENV183196600
OLPU01001843
[OLPU] human gut metagenome; faeces
15060
14985
-
Phe
GAA
[ENA]
¢þ
>WENV183200449
OLPW01002033
[OLPW] human gut metagenome; faeces
4881
4956
+
Phe
GAA
[ENA]
¢þ
>WENV183202312
OLPX01001915
[OLPX] human gut metagenome; faeces
5055
4980
-
Phe
GAA
[ENA]
¢þ
>WENV183202514
OLPX01005904
[OLPX] human gut metagenome; faeces
4002
4077
+
Phe
GAA
[ENA]
¢þ
>WENV183204926
OLPZ01001149
[OLPZ] human gut metagenome; faeces
1062
1137
+
Phe
GAA
[ENA]
¢þ
>WENV183205414
OLPZ01008865
[OLPZ] human gut metagenome; faeces
2145
2220
+
Phe
GAA
[ENA]
¢þ
>WENV183212621
OLQD01005227
[OLQD] human gut metagenome; faeces
6547
6472
-
Phe
GAA
[ENA]
¢þ
>WENV183213925
OLQE01000509
[OLQE] human gut metagenome; faeces
3811
3886
+
Phe
GAA
[ENA]
¢þ
>WENV183216348
OLQH01001037
[OLQH] human gut metagenome; faeces
9466
9391
-
Phe
GAA
[ENA]
¢þ
>WENV183216641
OLQH01004057
[OLQH] human gut metagenome; faeces
900
825
-
Phe
GAA
[ENA]
¢þ
>WENV183217563
OLQI01000690
[OLQI] human gut metagenome; faeces
2553
2478
-
Phe
GAA
[ENA]
¢þ
>WENV183217914
OLQI01003737
[OLQI] human gut metagenome; faeces
3996
4071
+
Phe
GAA
[ENA]
¢þ
>WENV183220871
OLQL01000746
[OLQL] human gut metagenome; faeces
14004
14079
+
Phe
GAA
[ENA]
¢þ
>WENV183225298
OLQN01053378
[OLQN] human gut metagenome; faeces
652
577
-
Phe
GAA
[ENA]
¢þ
>WENV183226685
OLQO01010883
[OLQO] human gut metagenome; faeces
268
343
+
Phe
GAA
[ENA]
¢þ
>WENV183228856
OLQR01006229
[OLQR] human gut metagenome; faeces
46
121
+
Phe
GAA
[ENA]
¢þ
>WENV183231612
OLQU01000269
[OLQU] human gut metagenome; faeces
36035
35960
-
Phe
GAA
[ENA]
¢þ
>WENV183236315
OLQX01002314
[OLQX] human gut metagenome; faeces
9195
9120
-
Phe
GAA
[ENA]
¢þ
>WENV183242908
OLRC01002430
[OLRC] human gut metagenome; faeces
10008
10083
+
Phe
GAA
[ENA]
¢þ
>WENV183246803
OLRF01000658
[OLRF] human gut metagenome; faeces
14856
14781
-
Phe
GAA
[ENA]
¢þ
>WENV183255245
OLRK01000089
[OLRK] human gut metagenome; faeces
93101
93026
-
Phe
GAA
[ENA]
¢þ
>WENV183262520
OLRQ01002692
[OLRQ] human gut metagenome; faeces
3125
3050
-
Phe
GAA
[ENA]
¢þ
>WENV183264268
OLRR01010567
[OLRR] human gut metagenome; faeces
2335
2260
-
Phe
GAA
[ENA]
¢þ
>WENV183265631
OLRS01043827
[OLRS] human gut metagenome; faeces
591
516
-
Phe
GAA
[ENA]
¢þ
>WENV183267208
OLRU01000003
[OLRU] human gut metagenome; faeces
296396
296321
-
Phe
GAA
[ENA]
¢þ
>WENV183272083
OLRW01003896
[OLRW] human gut metagenome; faeces
6382
6307
-
Phe
GAA
[ENA]
¢þ
>WENV183273282
OLRX01004468
[OLRX] human gut metagenome; faeces
4033
4108
+
Phe
GAA
[ENA]
¢þ
>WENV183274850
OLRY01002569
[OLRY] human gut metagenome; faeces
9412
9487
+
Phe
GAA
[ENA]
¢þ
>WENV183277752
OLSA01002709
[OLSA] human gut metagenome; faeces
3723
3798
+
Phe
GAA
[ENA]
¢þ
>WENV183280437
OLSB01004537
[OLSB] human gut metagenome; faeces
2547
2472
-
Phe
GAA
[ENA]
¢þ
>WENV183281795
OLSC01000250
[OLSC] human gut metagenome; faeces
42616
42691
+
Phe
GAA
[ENA]
¢þ
>WENV183285610
OLSE01000621
[OLSE] human gut metagenome; faeces
9027
9102
+
Phe
GAA
[ENA]
¢þ
>WENV183285956
OLSE01001865
[OLSE] human gut metagenome; faeces
11107
11182
+
Phe
GAA
[ENA]
¢þ
>WENV183291675
OLSI01006705
[OLSI] human gut metagenome; faeces
6
81
+
Phe
GAA
[ENA]
¢þ
>WENV183292143
OLSJ01000188
[OLSJ] human gut metagenome; faeces
59243
59168
-
Phe
GAA
[ENA]
¢þ
>WENV183295816
OLSL01003974
[OLSL] human gut metagenome; faeces
7522
7597
+
Phe
GAA
[ENA]
¢þ
>WENV183296916
OLSM01000450
[OLSM] human gut metagenome; faeces
8437
8512
+
Phe
GAA
[ENA]
¢þ
>WENV183297399
OLSM01002700
[OLSM] human gut metagenome; faeces
7867
7942
+
Phe
GAA
[ENA]
¢þ
>WENV183298807
OLSN01000978
[OLSN] human gut metagenome; faeces
1689
1764
+
Phe
GAA
[ENA]
¢þ
>WENV183300895
OLSO01003565
[OLSO] human gut metagenome; faeces
3083
3008
-
Phe
GAA
[ENA]
¢þ
>WENV183312873
OLVP01001297
[OLVP] human gut metagenome; faeces
13199
13274
+
Phe
GAA
[ENA]
¢þ
>WENV183321442
OLVW01026236
[OLVW] human gut metagenome; faeces
999
1074
+
Phe
GAA
[ENA]
¢þ
>WENV183345303
OLWR01000357
[OLWR] human gut metagenome; feces
13795
13870
+
Phe
GAA
[ENA]
¢þ
>WENV183350737
OLWX01008443
[OLWX] human gut metagenome; feces
319
244
-
Phe
GAA
[ENA]
¢þ
>WENV170096440
CEAK01016495
[CEAK] gut metagenome; human stools
173
248
+
Phe
GAA
[ENA]
¢þ
>C181221173
LT900217
Actinomycetota
Gordonibacter urolithinfaciens DSM 27213T [LT900217]
1583771
1583696
-
Phe
GAA
-
¡û
>W1910550429
FZQX01000008
Actinomycetota
Raoultibacter massiliensis Marseille-P2849 [FZQX]
145224
145299
+
Phe
GAA
[ENA]
¡û
>W1911502533
OEPT01000064
Actinomycetota
Raoultibacter timonensis Marseille-P3277 [OEPT]
82890
82815
-
Phe
GAA
[ENA]
¡û
>W1911679832
QIBV01000001
Actinomycetota
Gordonibacter urolithinfaciens JCM 16058 [QIBV]
375153
375078
-
Phe
GAA
[ENA]
¡û
>W1911679872
QIBW01000001
Actinomycetota
Gordonibacter urolithinfaciens DSM 27213 [QIBW]
147089
147164
+
Phe
GAA
[ENA]
¡û
>W1911679980
QIBY01000006
Actinomycetota
Parvibacter caecicola DSM 22242 [QIBY]
52469
52394
-
Phe
GAA
[ENA]
¡û
>W1911680241
QICD01000004
Actinomycetota
Paraeggerthella hongkongensis DSM 16106 [QICD]
10233
10158
-
Phe
GAA
[ENA]
¡û
>W1810240743
PPTQ01000004
Actinomycetota
Paraeggerthella hongkongensis RC2/2 A [PPTQ]
20462
20387
-
Phe
GAA
[ENA]
¡û
>W1810240826
PPTS01000001
Actinomycetota
Gordonibacter pamelaeae 3C [PPTS]
54665
54740
+
Phe
GAA
[ENA]
¡û
>W1810242187
PPUU01000022
Actinomycetota
Adlercreutzia equolifaciens AP38TSA [PPUU]
13836
13911
+
Phe
GAA
[ENA]
¡û
>C151048607
CP009302
Actinomycetota
Berryella intestinalis 68-1-3 [CP009302]
41345
41420
+
Phe
GAA
[Ensembl]
¡û
>C11108699
AP012211
Actinomycetota
Eggerthella sp. YY7918 [AP012211]
133709
133784
+
Phe
GAA
[Ensembl]
¡û
>C161103633
FP929047
Actinomycetota
Gordonibacter pamelaeae 7-10-1-b 7-10-1-bT [FP929047]
1227769
1227694
-
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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