This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.474979 (129 seq.)
>W1711581257
MNTW01000006
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
120290
120215
-
Gly
TCC
[ENA]
¡û
>C171129796
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
1166463
1166538
+
Gly
TCC
-
¡û
>W131106838
APFI01000075
Thermodesulfobacteriota
Desulfovibrio sp. Dsv1 [APFI]
16380
16305
-
Gly
TCC
[ENA]
¡û
>W131215410
ATUZ01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
149193
149118
-
Gly
TCC
[ENA]
¡û
>WENV180205726
OBAH01082535
[OBAH] human gut metagenome; human gut
267
192
-
Gly
TCC
[ENA]
¢þ
>WENV180220998
OBAX01002562
[OBAX] human gut metagenome; human gut
1643
1568
-
Gly
TCC
[ENA]
¢þ
>WENV180221676
OBBA01007687
[OBBA] human gut metagenome; human gut
545
470
-
Gly
TCC
[ENA]
¢þ
>WENV180223312
OBBG01001600
[OBBG] human gut metagenome; human gut
346
421
+
Gly
TCC
[ENA]
¢þ
>WENV180223677
OBBH01003628
[OBBH] human gut metagenome; human gut
356
431
+
Gly
TCC
[ENA]
¢þ
>WENV180240314
OBDC01010766
[OBDC] human gut metagenome; human gut
190
265
+
Gly
TCC
[ENA]
¢þ
>WENV180246607
OBDP01011239
[OBDP] human gut metagenome; human gut
554
479
-
Gly
TCC
[ENA]
¢þ
>WENV180274671
OBHE01006625
[OBHE] human gut metagenome; human gut
956
881
-
Gly
TCC
[ENA]
¢þ
>WENV180337881
OBLG01172028
[OBLG] human gut metagenome; human gut
249
174
-
Gly
TCC
[ENA]
¢þ
>WENV180539371
OCHP01006023
[OCHP] human gut metagenome; human gut
326
401
+
Gly
TCC
[ENA]
¢þ
>WENV180544057
OCIP01000524
[OCIP] human gut metagenome; human gut
1519
1594
+
Gly
TCC
[ENA]
¢þ
>WENV180544416
OCIQ01003736
[OCIQ] human gut metagenome; human gut
249
324
+
Gly
TCC
[ENA]
¢þ
>WENV180544848
OCIR01052389
[OCIR] human gut metagenome; human gut
125
50
-
Gly
TCC
[ENA]
¢þ
>WENV180545374
OCIT01003887
[OCIT] human gut metagenome; human gut
1639
1564
-
Gly
TCC
[ENA]
¢þ
>WENV180627974
OCQO01008103
[OCQO] human gut metagenome; human gut
1610
1535
-
Gly
TCC
[ENA]
¢þ
>WENV180962701
ODUN01022408
[ODUN] human metagenome; G_DNA_Stool
1644
1569
-
Gly
TCC
[ENA]
¢þ
>WENV181116496
OEFA01009561
[OEFA] human gut metagenome; human gut
653
728
+
Gly
TCC
[ENA]
¢þ
>WENV181332811
OFMA01007327
[OFMA] human gut metagenome; human gut
3576
3651
+
Gly
TCC
[ENA]
¢þ
>WENV181451213
OGDY01003342
[OGDY] metagenome; Human gut stool
1656
1581
-
Gly
TCC
[ENA]
¢þ
>WENV181505458
OGGK01020384
[OGGK] metagenome; Human gut stool
1358
1283
-
Gly
TCC
[ENA]
¢þ
>WENV181525087
OGHJ01000008
[OGHJ] metagenome; Human gut stool
159712
159787
+
Gly
TCC
[ENA]
¢þ
>WENV181578128
OGJY01000406
[OGJY] metagenome; Human gut stool
47352
47427
+
Gly
TCC
[ENA]
¢þ
>WENV181621531
OGMF01007778
[OGMF] metagenome; Human gut stool
1102
1177
+
Gly
TCC
[ENA]
¢þ
>WENV181637068
OGNB01000954
[OGNB] metagenome; Human gut stool
8491
8416
-
Gly
TCC
[ENA]
¢þ
>WENV181641457
OGNF01004367
[OGNF] metagenome; Human gut stool
7960
8035
+
Gly
TCC
[ENA]
¢þ
>WENV181676109
OGOP01033806
[OGOP] human gut metagenome; faeces
397
322
-
Gly
TCC
[ENA]
¢þ
>WENV181677930
OGOQ01024312
[OGOQ] human gut metagenome; faeces
1366
1291
-
Gly
TCC
[ENA]
¢þ
>WENV181688379
OGOX01039385
[OGOX] human gut metagenome; faeces
447
372
-
Gly
TCC
[ENA]
¢þ
>WENV181710327
OGPN01059098
[OGPN] human gut metagenome; faeces
320
245
-
Gly
TCC
[ENA]
¢þ
>WENV181718830
OGPT01058686
[OGPT] human gut metagenome; faeces
462
387
-
Gly
TCC
[ENA]
¢þ
>WENV181728150
OGQA01021022
[OGQA] human gut metagenome; faeces
395
470
+
Gly
TCC
[ENA]
¢þ
>WENV181739245
OGQI01096394
[OGQI] human gut metagenome; faeces
235
160
-
Gly
TCC
[ENA]
¢þ
>WENV181753144
OGQQ01087803
[OGQQ] human gut metagenome; faeces
222
297
+
Gly
TCC
[ENA]
¢þ
>WENV181865571
OGWU01042370
[OGWU] human gut metagenome; faeces
646
721
+
Gly
TCC
[ENA]
¢þ
>WENV181874541
OGXA01032902
[OGXA] human gut metagenome; faeces
582
507
-
Gly
TCC
[ENA]
¢þ
>WENV181877439
OGXD01008686
[OGXD] human gut metagenome; faeces
318
393
+
Gly
TCC
[ENA]
¢þ
>WENV181883829
OGXI01014985
[OGXI] human gut metagenome; faeces
734
659
-
Gly
TCC
[ENA]
¢þ
>WENV181898245
OGXT01003115
[OGXT] human gut metagenome; faeces
2545
2620
+
Gly
TCC
[ENA]
¢þ
>WENV181902685
OGXW01069384
[OGXW] human gut metagenome; faeces
258
333
+
Gly
TCC
[ENA]
¢þ
>WENV181902901
OGXX01000083
[OGXX] human gut metagenome; faeces
66762
66837
+
Gly
TCC
[ENA]
¢þ
>WENV181907013
OGXZ01018649
[OGXZ] human gut metagenome; faeces
1372
1297
-
Gly
TCC
[ENA]
¢þ
>WENV181913222
OGYE01004303
[OGYE] human gut metagenome; faeces
1501
1426
-
Gly
TCC
[ENA]
¢þ
>WENV181929168
OGYO01012492
[OGYO] human gut metagenome; faeces
73
148
+
Gly
TCC
[ENA]
¢þ
>WENV181942605
OGYZ01000542
[OGYZ] human gut metagenome; faeces
526
451
-
Gly
TCC
[ENA]
¢þ
>WENV181953715
OGZI01020344
[OGZI] human gut metagenome; faeces
625
550
-
Gly
TCC
[ENA]
¢þ
>WENV181955458
OGZK01003447
[OGZK] human gut metagenome; faeces
1693
1618
-
Gly
TCC
[ENA]
¢þ
>WENV181960395
OGZO01000030
[OGZO] human gut metagenome; faeces
40441
40516
+
Gly
TCC
[ENA]
¢þ
>WENV181973253
OHAA01020570
[OHAA] human gut metagenome; faeces
459
384
-
Gly
TCC
[ENA]
¢þ
>WENV181980544
OHAF01051252
[OHAF] human gut metagenome; faeces
604
529
-
Gly
TCC
[ENA]
¢þ
>WENV181984709
OHAI01042015
[OHAI] human gut metagenome; faeces
740
815
+
Gly
TCC
[ENA]
¢þ
>WENV181985100
OHAJ01000701
[OHAJ] human gut metagenome; faeces
24503
24578
+
Gly
TCC
[ENA]
¢þ
>WENV181991497
OHAQ01002904
[OHAQ] human gut metagenome; faeces
1136
1211
+
Gly
TCC
[ENA]
¢þ
>WENV181995618
OHAT01005188
[OHAT] human gut metagenome; faeces
5436
5511
+
Gly
TCC
[ENA]
¢þ
>WENV182009616
OHBJ01025887
[OHBJ] human gut metagenome; faeces
1221
1146
-
Gly
TCC
[ENA]
¢þ
>WENV182011536
OHBM01001564
[OHBM] human gut metagenome; faeces
10116
10041
-
Gly
TCC
[ENA]
¢þ
>WENV182166547
OHMP01024762
[OHMP] human gut metagenome; feces
757
832
+
Gly
TCC
[ENA]
¢þ
>WENV182199967
OHPK01016578
[OHPK] human gut metagenome; feces
383
308
-
Gly
TCC
[ENA]
¢þ
>WENV182208504
OHPX01019053
[OHPX] human gut metagenome; feces
712
787
+
Gly
TCC
[ENA]
¢þ
>WENV182392603
OIEG01060112
[OIEG] human gut metagenome; human gut
52
127
+
Gly
TCC
[ENA]
¢þ
>WENV182510071
OIWK01000590
[OIWK] human gut metagenome; faeces
32294
32219
-
Gly
TCC
[ENA]
¢þ
>WENV182537531
OIXH01009622
[OIXH] human gut metagenome; faeces
828
903
+
Gly
TCC
[ENA]
¢þ
>WENV182596042
OJIY01000442
[OJIY] metagenome; faeces
11429
11354
-
Gly
TCC
[ENA]
¢þ
>WENV182655318
OJMI01028560
[OJMI] human gut metagenome; feces
796
871
+
Gly
TCC
[ENA]
¢þ
>WENV182684220
OJNX01056634
[OJNX] human gut metagenome; human gut
390
465
+
Gly
TCC
[ENA]
¢þ
>WENV182699594
OJON01067813
[OJON] human gut metagenome; human gut
345
270
-
Gly
TCC
[ENA]
¢þ
>WENV182700419
OJOO01042691
[OJOO] human gut metagenome; human gut
212
287
+
Gly
TCC
[ENA]
¢þ
>WENV182720239
OJPN01005607
[OJPN] human gut metagenome; stool sample
237
312
+
Gly
TCC
[ENA]
¢þ
>WENV182727686
OJPW01000086
[OJPW] human gut metagenome; stool sample
4921
4846
-
Gly
TCC
[ENA]
¢þ
>WENV182732062
OJQA01028535
[OJQA] human gut metagenome; stool sample
624
549
-
Gly
TCC
[ENA]
¢þ
>WENV182881022
OKSA01002890
[OKSA] human gut metagenome; faeces
12792
12867
+
Gly
TCC
[ENA]
¢þ
>WENV182882563
OKSB01000766
[OKSB] human gut metagenome; faeces
23431
23506
+
Gly
TCC
[ENA]
¢þ
>WENV182888968
OKSE01015027
[OKSE] human gut metagenome; faeces
1151
1226
+
Gly
TCC
[ENA]
¢þ
>WENV182891878
OKSH01006340
[OKSH] human gut metagenome; faeces
346
421
+
Gly
TCC
[ENA]
¢þ
>WENV182893061
OKSI01038551
[OKSI] human gut metagenome; feces
374
449
+
Gly
TCC
[ENA]
¢þ
>WENV183028813
OLFV01008911
[OLFV] human gut metagenome; faeces
2576
2651
+
Gly
TCC
[ENA]
¢þ
>WENV183029646
OLFW01001012
[OLFW] human gut metagenome; faeces
17156
17231
+
Gly
TCC
[ENA]
¢þ
>WENV183032642
OLFY01000389
[OLFY] human gut metagenome; faeces
63323
63398
+
Gly
TCC
[ENA]
¢þ
>WENV183075105
OLIV01009941
[OLIV] human gut metagenome; stool sample
2166
2241
+
Gly
TCC
[ENA]
¢þ
>WENV183156704
OLOS01022342
[OLOS] human gut metagenome; faeces
233
308
+
Gly
TCC
[ENA]
¢þ
>WENV183258508
OLRN01007445
[OLRN] human gut metagenome; faeces
2600
2525
-
Gly
TCC
[ENA]
¢þ
>WENV183269878
OLRV01001855
[OLRV] human gut metagenome; faeces
3677
3602
-
Gly
TCC
[ENA]
¢þ
>WENV183324817
OLVY01061377
[OLVY] human gut metagenome; feces
649
574
-
Gly
TCC
[ENA]
¢þ
>WENV183339034
OLWK01009058
[OLWK] human gut metagenome; feces
370
445
+
Gly
TCC
[ENA]
¢þ
>WENV183488504
OMFY01056260
[OMFY] human gut metagenome; feces
303
378
+
Gly
TCC
[ENA]
¢þ
>WENV183493085
OMGI01006154
[OMGI] human gut metagenome; human gut
3586
3661
+
Gly
TCC
[ENA]
¢þ
>WENV183501343
OMGS01000078
[OMGS] human gut metagenome; human gut
14455
14380
-
Gly
TCC
[ENA]
¢þ
>WENV183505401
OMGX01002276
[OMGX] human gut metagenome; human gut
6079
6154
+
Gly
TCC
[ENA]
¢þ
>WENV183532839
OOAD01015198
[OOAD] human gut metagenome; human gut
1353
1278
-
Gly
TCC
[ENA]
¢þ
>WENV183540266
OOAJ01007125
[OOAJ] human gut metagenome; human gut
433
508
+
Gly
TCC
[ENA]
¢þ
>WENV183545646
OOAQ01012580
[OOAQ] human gut metagenome; human gut
299
224
-
Gly
TCC
[ENA]
¢þ
>WENV183575180
OOCI01000588
[OOCI] human gut metagenome; human gut
958
883
-
Gly
TCC
[ENA]
¢þ
>WENV183597743
OODF01003633
[OODF] human gut metagenome; human gut
3095
3170
+
Gly
TCC
[ENA]
¢þ
>WENV183601092
OODJ01000234
[OODJ] human gut metagenome; human gut
4760
4685
-
Gly
TCC
[ENA]
¢þ
>WENV183603833
OODL01000304
[OODL] human gut metagenome; human gut
5200
5125
-
Gly
TCC
[ENA]
¢þ
>WENV183632892
OOIF01033176
[OOIF] human gut metagenome; human gut
532
457
-
Gly
TCC
[ENA]
¢þ
>WENV183634013
OOIG01006174
[OOIG] human gut metagenome; human gut
4736
4661
-
Gly
TCC
[ENA]
¢þ
>WENV183639712
OQVI01044120
[OQVI] human gut metagenome; human gut
817
892
+
Gly
TCC
[ENA]
¢þ
>WENV183747724
PPCM01022255
[PPCM] marine sediment metagenome; marine sediment
679
604
-
Gly
TCC
[ENA]
¢þ
>WENV183776152
PPYF01083712
[PPYF] human gut metagenome; stool from patient with Crohn's disease
291
216
-
Gly
TCC
[ENA]
¢þ
>WENV183786974
PPYF01309611
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4926
4851
-
Gly
TCC
[ENA]
¢þ
>WENV183788961
PPYF01372018
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3787
3862
+
Gly
TCC
[ENA]
¢þ
>WENV170057522
CDZG01041007
[CDZG] gut metagenome; human stools
327
252
-
Gly
TCC
[ENA]
¢þ
>WENV170061386
CDZI01046545
[CDZI] gut metagenome; human stools
320
245
-
Gly
TCC
[ENA]
¢þ
>WENV170077040
CDZU01019608
[CDZU] gut metagenome; human stools
614
539
-
Gly
TCC
[ENA]
¢þ
>WENV170078476
CDZV01026721
[CDZV] gut metagenome; human stools
482
557
+
Gly
TCC
[ENA]
¢þ
>WENV170091111
CEAF01071302
[CEAF] gut metagenome; human stools
938
863
-
Gly
TCC
[ENA]
¢þ
>WENV170111046
CECF01057056
[CECF] gut metagenome; human stools
385
310
-
Gly
TCC
[ENA]
¢þ
>WENV170645410
JMSV01003254
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
475
400
-
Gly
TCC
[ENA]
¢þ
>WENV170785701
MDSP01288623
[MDSP] gut metagenome; Stomach gut content
143
218
+
Gly
TCC
[ENA]
¢þ
>WENV170786079
MDSQ01187042
[MDSQ] gut metagenome; Hindgut content
1168
1093
-
Gly
TCC
[ENA]
¢þ
>C181001571
AP017368
Thermodesulfobacteriota
Candidatus Desulfovibrio trichonymphae Rs-N31 [AP017368]
383747
383672
-
Gly
TCC
-
¡û
>C181081080
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
1056104
1056029
-
Gly
TCC
-
¡û
>C191149689
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
2180742
2180817
+
Gly
TCC
-
¡û
>W09112336
ABXU01000003
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
23104
23029
-
Gly
TCC
[ENA]
¡û
>W09117964
ACCN01000001
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
119446
119521
+
Gly
TCC
[ENA]
¡û
>W09118228
ACCT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
82815
82740
-
Gly
TCC
[ENA]
¡û
>C09103839
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
1955565
1955640
+
Gly
TCC
[Ensembl]
¡û
>C09104197
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
1302840
1302915
+
Gly
TCC
[Ensembl]
¡û
>W1810792950
QRJJ01000019
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
14807
14732
-
Gly
TCC
[ENA]
¡û
>W10111708
ADDR01000130
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
34645
34720
+
Gly
TCC
[ENA]
¡û
>W11106998
ACWM01000018
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
47883
47958
+
Gly
TCC
[ENA]
¡û
>W11114635
ADDR01000130
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
34645
34720
+
Gly
TCC
[ENA]
¡û
>C161069007
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
867538
867463
-
Gly
TCC
[Ensembl]
¡û
>W1710515579
FNBX01000001
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
243816
243741
-
Gly
TCC
[ENA]
¡û
>W1710579859
FPIW01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
5678
5603
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK