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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.475646 (20 seq.)
>W131237271
AUNU01000044
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-N14 [AUNU]
774
847
+
Gly
CCC
[ENA]
¡û
>C171081225
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
1254805
1254732
-
Gly
CCC
-
¡û
>WENV180368418
OBOF01082053
[OBOF] marine metagenome; ENVO:00002010
396
469
+
Gly
CCC
[ENA]
¡û
>WENV180593777
OCOX01192364
[OCOX] marine metagenome; ENVO:00002010
245
172
-
Gly
CCC
[ENA]
¡û
>WENV181155675
OEID01335859
[OEID] soil metagenome; soil
176
103
-
Gly
CCC
[ENA]
¡û
>WENV183748142
PPFU01014891
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2576
2649
+
Gly
CCC
[ENA]
¡û
>WENV170176682
CEOS01111155
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
509
582
+
Gly
CCC
[ENA]
¡û
>WENV170993738
MWWB01430557
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
9
82
+
Gly
CCC
[ENA]
¡û
>WENV170993739
MWWB01430557
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
147
220
+
Gly
CCC
[ENA]
¡û
>C191171253
CP039704
Alphaproteobacteria
Hankyongella ginsenosidimutans W1-2-3 [CP039704]
161249
161176
-
Gly
CCC
-
¡û
>W1810365579
PVUG01000008
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
184447
184374
-
Gly
CCC
[ENA]
¡û
>W1810543592
QDKM01000002
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
635032
634959
-
Gly
CCC
[ENA]
¡û
>W2011627752
SMAR01000003
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
89975
90048
+
Gly
CCC
[ENA]
¡û
>W2012354002
WJSQ01000035
Alphaproteobacteria
Sphingomonas sp. YJ09 [WJSQ]
10080
10007
-
Gly
CCC
[ENA]
¡û
>C211138727
CP060780
Alphaproteobacteria
Sphingomonas daechungensis KACC 18115 [CP060780]
2296602
2296529
-
Gly
CCC
-
¡û
>C211232427
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
3838668
3838595
-
Gly
CCC
-
¡û
>C161070377
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
3454314
3454241
-
Gly
CCC
[Ensembl]
¡û
>W1610597427
LFEU01000066
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha9 [LFEU]
239
166
-
Gly
CCC
[ENA]
¡û
>W1611032191
LZFQ01000004
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
100171
100098
-
Gly
CCC
[ENA]
¡û
>W1710718751
LFEU01000066
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha9 [LFEU]
239
166
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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