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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.477874 (37 seq.)
>W1710862005
LMEB01000009
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
6432
6507
+
Trp
CCA
[ENA]
¡û
>W1710873846
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
149308
149383
+
Trp
CCA
[ENA]
¡û
>W1710876087
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
600966
601041
+
Trp
CCA
[ENA]
¡û
>W1711407980
MGLM01000449
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
217
142
-
Trp
CCA
[ENA]
¡û
>W1711407995
MGLN01000046
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
14461
14386
-
Trp
CCA
[ENA]
¡û
>W131052442
AMYY01000042
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
8722
8797
+
Trp
CCA
[ENA]
¡û
>WENV180878741
ODLX01028216
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
207
132
-
Trp
CCA
[ENA]
¢þ
>WENV181223105
OFDC01001996
[OFDC] hot springs metagenome; Water
7247
7322
+
Trp
CCA
[ENA]
¢þ
>WENV181227264
OFDN01004508
[OFDN] hot springs metagenome; Water
4564
4639
+
Trp
CCA
[ENA]
¢þ
>WENV181371044
OFQU01011277
[OFQU] wastewater metagenome; Exp Tend CN 90WW
838
763
-
Trp
CCA
[ENA]
¢þ
>WENV181380394
OFRD01074669
[OFRD] wastewater metagenome; Exp Tend CN 100WW
111
36
-
Trp
CCA
[ENA]
¢þ
>WENV181384380
OFRI01000480
[OFRI] wastewater metagenome; Exp Tend VB 90WW
7736
7661
-
Trp
CCA
[ENA]
¢þ
>WENV181400601
OFSF01012861
[OFSF] wastewater metagenome; Exp Tend VB 100WW
966
1041
+
Trp
CCA
[ENA]
¢þ
>W08010827
ABRU01000034
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
14026
14101
+
Trp
CCA
[ENA]
¡û
>WENV170011940
APMI01104880
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1346
1421
+
Trp
CCA
[ENA]
¢þ
>WENV170193563
CEPH01136133
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
331
406
+
Trp
CCA
[ENA]
¢þ
>WENV170594874
FUFK011512798
[FUFK] metagenome; unknown
220
295
+
Trp
CCA
[ENA]
¢þ
>WENV170658926
JUGB01000105
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
925
850
-
Trp
CCA
[ENA]
¢þ
>WENV170838386
MDSZ01166767
[MDSZ] marine metagenome; seawater
24404
24329
-
Trp
CCA
[ENA]
¢þ
>C181056237
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2869087
2869162
+
Trp
CCA
-
¡û
>C191166101
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1602522
1602597
+
Trp
CCA
-
¡û
>C191189135
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2235580
2235505
-
Trp
CCA
-
¡û
>W141712442
JMQR01000040
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
12783
12708
-
Trp
CCA
[ENA]
¡û
>W1910725233
MGLJ01000541
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
5262
5187
-
Trp
CCA
[ENA]
¡û
>W1910725281
MGLL01000038
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
6592
6517
-
Trp
CCA
[ENA]
¡û
>W1511489453
JWSY01000002
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
2433
2358
-
Trp
CCA
[ENA]
¡û
>W1511547869
JZRG01000007
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
2440
2365
-
Trp
CCA
[ENA]
¡û
>C161047060
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2623110
2623035
-
Trp
CCA
[Ensembl]
¡û
>C161089123
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1641073
1640998
-
Trp
CCA
[Ensembl]
¡û
>W1610074205
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
119682
119607
-
Trp
CCA
[ENA]
¡û
>W1610724351
LMEB01000009
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
6432
6507
+
Trp
CCA
[ENA]
¡û
>W1610736192
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
149308
149383
+
Trp
CCA
[ENA]
¡û
>W1610738433
LMOY01000001
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
600966
601041
+
Trp
CCA
[ENA]
¡û
>W1710071323
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
119682
119607
-
Trp
CCA
[ENA]
¡û
>W1710084613
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
591509
591434
-
Trp
CCA
[ENA]
¡û
>W1710527028
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
899913
899838
-
Trp
CCA
[ENA]
¡û
>W1710576194
FOZV01000006
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
4142
4217
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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