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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.478395 (79 seq.)
>W1710822430
LKUW01000049
Betaproteobacteria
Paracidovorax citrulli [LKUW]
191648
191721
+
Cys
GCA
[ENA]
¡û
>W1710860000
LMCN01000011
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
140486
140559
+
Cys
GCA
[ENA]
¡û
>W1710892660
LNDZ01000013
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
213583
213656
+
Cys
GCA
[ENA]
¡û
>W131237369
AUOF01000077
Betaproteobacteria
Burkholderiales bacterium JGI 0001003-J08 [AUOF]
25218
25291
+
Cys
GCA
[ENA]
¡û
>W1711394914
MESO01000007
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
46190
46117
-
Cys
GCA
[ENA]
¡û
>C007487
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
2190806
2190879
+
Cys
GCA
[Ensembl]
¡û
>WENV180099665
NMRC01022254
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
322
395
+
Cys
GCA
[ENA]
¡û
>WENV180099726
NMRC01024796
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
140
213
+
Cys
GCA
[ENA]
¡û
>WENV180391330
OBPM01090593
[OBPM] marine metagenome; ENVO:00002010
198
125
-
Cys
GCA
[ENA]
¡û
>WENV181227532
OFDN01014775
[OFDN] hot springs metagenome; Water
143
216
+
Cys
GCA
[ENA]
¡û
>WENV181364995
OFPH01000077
[OFPH] sediment metagenome; Lake sediment
3224
3297
+
Cys
GCA
[ENA]
¡û
>WENV181365117
OFPK01000001
[OFPK] sediment metagenome; Lake sediment
99113
99040
-
Cys
GCA
[ENA]
¡û
>WENV181365176
OFPL01000010
[OFPL] sediment metagenome; Lake sediment
17296
17223
-
Cys
GCA
[ENA]
¡û
>WENV181367662
OFQC01000525
[OFQC] freshwater metagenome; Freshwater Lake
1061
1134
+
Cys
GCA
[ENA]
¡û
>WENV181368773
OFQN01000381
[OFQN] freshwater metagenome; Freshwater Lake
238
165
-
Cys
GCA
[ENA]
¡û
>WENV181395651
OFSB01000126
[OFSB] freshwater metagenome; Freshwater Lake
9181
9254
+
Cys
GCA
[ENA]
¡û
>WENV181414713
OGCL01001129
[OGCL] hot springs metagenome; Hot spring water
1565
1492
-
Cys
GCA
[ENA]
¡û
>WENV181416238
OGCL01064222
[OGCL] hot springs metagenome; Hot spring water
799
872
+
Cys
GCA
[ENA]
¡û
>W141234430
BAWN01000044
Betaproteobacteria
Serpentinimonas barnesii H1 [BAWN]
20771
20844
+
Cys
GCA
[ENA]
¡û
>WENV183712587
PDWI01106046
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1745
1818
+
Cys
GCA
[ENA]
¡û
>WENV170019815
BBPE01000728
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
8945
9018
+
Cys
GCA
[ENA]
¡û
>WENV170019906
BBPE01001340
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2931
2858
-
Cys
GCA
[ENA]
¡û
>WENV170559855
CXWL01162099
[CXWL] groundwater metagenome; biofilm material
223
296
+
Cys
GCA
[ENA]
¡û
>WENV170961389
MLJW01000021
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
27580
27507
-
Cys
GCA
[ENA]
¡û
>C191007521
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
1553027
1553100
+
Cys
GCA
-
¡û
>W141701636
JMKU01000016
Betaproteobacteria
Paracidovorax oryzae ATCC 19882 [JMKU]
120448
120521
+
Cys
GCA
[ENA]
¡û
>W09100862
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
597691
597764
+
Cys
GCA
[ENA]
¡û
>W1910888647
NERZ01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
559147
559074
-
Cys
GCA
[ENA]
¡û
>W1910888789
NESC01000008
Betaproteobacteria
Limnohabitans sp. Jir72 [NESC]
43533
43606
+
Cys
GCA
[ENA]
¡û
>W1910889226
NESN01000001
Betaproteobacteria
Limnohabitans parvus II-B4 [NESN]
278795
278722
-
Cys
GCA
[ENA]
¡û
>W1911390929
NWBQ01000053
Betaproteobacteria
Macromonas bipunctata DSM 12705 [NWBQ]
51489
51562
+
Cys
GCA
[ENA]
¡û
>SRA1003641
SRR002327.86842
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
191
264
+
Cys
GCA
[SRA]
>W1810355009
PVLQ01000061
Betaproteobacteria
Malikia granosa P1 [PVLQ]
6477
6550
+
Cys
GCA
[ENA]
¡û
>W1810573154
QEKN01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5684 [QEKN]
3937774
3937701
-
Cys
GCA
[ENA]
¡û
>W1810696130
QLTA01000006
Betaproteobacteria
Paracidovorax anthurii CFPB 3232 [QLTA]
55346
55273
-
Cys
GCA
[ENA]
¡û
>W2010673292
JACCDB010000005
Betaproteobacteria
Tepidicella baoligensis B18-50 [JACCDB]
139865
139938
+
Cys
GCA
[ENA]
¡û
>W2010673297
JACCDB010000005
Betaproteobacteria
Tepidicella baoligensis B18-50 [JACCDB]
140274
140201
-
Cys
GCA
[ENA]
¡û
>W2010673299
JACCDB010000005
Betaproteobacteria
Tepidicella baoligensis B18-50 [JACCDB]
139772
139699
-
Cys
GCA
[ENA]
¡û
>W2010673300
JACCDB010000005
Betaproteobacteria
Tepidicella baoligensis B18-50 [JACCDB]
139621
139548
-
Cys
GCA
[ENA]
¡û
>W2010953505
NERZ01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
559147
559074
-
Cys
GCA
[ENA]
¡û
>W2010953647
NESC01000008
Betaproteobacteria
Limnohabitans sp. Jir72 [NESC]
43533
43606
+
Cys
GCA
[ENA]
¡û
>W2010954084
NESN01000001
Betaproteobacteria
Limnohabitans parvus II-B4 [NESN]
278795
278722
-
Cys
GCA
[ENA]
¡û
>W2011133467
NWBQ01000053
Betaproteobacteria
Macromonas bipunctata DSM 12705 [NWBQ]
51489
51562
+
Cys
GCA
[ENA]
¡û
>W2011392751
RCCQ01000001
Betaproteobacteria
Acidovorax citrulli AAC00-1 #5593 [RCCQ]
2949267
2949340
+
Cys
GCA
[ENA]
¡û
>W2011397758
RCHJ01000013
Betaproteobacteria
Piscinibacter defluvii SH-1 [RCHJ]
265151
265224
+
Cys
GCA
[ENA]
¡û
>W2011537832
SCMN01000036
Betaproteobacteria
Comamonadaceae bacterium 2FD [SCMN]
11594
11521
-
Cys
GCA
[ENA]
¡û
>W2011538000
SCMQ01000045
Betaproteobacteria
Comamonadaceae bacterium 2FH [SCMQ]
20292
20365
+
Cys
GCA
[ENA]
¡û
>W2011627275
SMAH01000003
Betaproteobacteria
Tepidimonas ignava DSM 12034 [SMAH]
125915
125842
-
Cys
GCA
[ENA]
¡û
>W2011693814
SSXW01000001
Betaproteobacteria
Dechloromonas sp. Dech2017 [SSXW]
331008
330935
-
Cys
GCA
[ENA]
¡û
>W2012062767
VJOL01000031
Betaproteobacteria
Tepidimonas thermarum AA-1 [VJOL]
347
274
-
Cys
GCA
[ENA]
¡û
>W2012062841
VJON01000002
Betaproteobacteria
Tepidimonas sp. SPSP-6 [VJON]
29116
29043
-
Cys
GCA
[ENA]
¡û
>W2012081963
VLKV01000004
Betaproteobacteria
Extensimonas vulgaris CGMCC 1.10977 [VLKV]
149794
149867
+
Cys
GCA
[ENA]
¡û
>W2012094195
VMYE01000010
Betaproteobacteria
Extensimonas sp. HX2-24 [VMYE]
98274
98347
+
Cys
GCA
[ENA]
¡û
>W2012208891
VYSB01000019
Betaproteobacteria
Malikia spinosa AB6 [VYSB]
30731
30658
-
Cys
GCA
[ENA]
¡û
>W2012426635
WSBA01000011
Betaproteobacteria
Acidovorax citrulli T1 [WSBA]
270834
270907
+
Cys
GCA
[ENA]
¡û
>W2110111879
CAJHOB010000009
Betaproteobacteria
Azonexus hydrophilus [CAJHOB]
70422
70495
+
Cys
GCA
[ENA]
¡û
>W2110280889
JACWIJ010000002
Betaproteobacteria
Melaminivora jejuensis KCTC 32230 [JACWIJ]
658671
658744
+
Cys
GCA
[ENA]
¡û
>W2110710091
JAIZDC010000004
Betaproteobacteria
Aquitalea sp. MWU13-2470 MWU14-2470 [JAIZDC]
326463
326536
+
Cys
GCA
[ENA]
¡û
>C211405990
CP083911
Betaproteobacteria
Tepidimonas taiwanensis LMG 22826 [CP083911]
1485404
1485331
-
Cys
GCA
-
¡û
>W10110536
ADCB01000002
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
21155
21082
-
Cys
GCA
[ENA]
¡û
>C231047686
CP042302
Betaproteobacteria
Acidovorax citrulli NWB SC074 [CP042302]
2893915
2893988
+
Cys
GCA
-
¡û
>C231047771
CP042303
Betaproteobacteria
Acidovorax citrulli NWB SC107 [CP042303]
1220062
1219989
-
Cys
GCA
-
¡û
>C231047813
CP042323
Betaproteobacteria
Acidovorax citrulli NWB SC196 [CP042323]
2510467
2510394
-
Cys
GCA
-
¡û
>C231140206
CP075192
Betaproteobacteria
Ferribacterium limneticum 132 [CP075192]
1961761
1961834
+
Cys
GCA
-
¡û
>C231220592
CP086060
Betaproteobacteria
Acidovorax citrulli HPP21-9-4B [CP086060]
2273404
2273331
-
Cys
GCA
-
¡û
>C11100173
CP002521
Betaproteobacteria
Paracidovorax avenae ATCC 19860 [CP002521]
1660794
1660721
-
Cys
GCA
[Ensembl]
¡û
>W11112973
ADCB01000002
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
21155
21082
-
Cys
GCA
[ENA]
¡û
>W1510720050
CXOM01000001
Betaproteobacteria
Limnohabitans sp. Rim11 [CXOM]
339430
339503
+
Cys
GCA
[ENA]
¡û
>W1510720156
CXOO01000034
Betaproteobacteria
Limnohabitans sp. DM1 [CXOO]
32554
32627
+
Cys
GCA
[ENA]
¡û
>W1511433130
JUGZ01000003
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
440826
440899
+
Cys
GCA
[ENA]
¡û
>W1511527452
JYHM01000024
Betaproteobacteria
Paracidovorax citrulli pslbtw65 [JYHM]
440351
440278
-
Cys
GCA
[ENA]
¡û
>C161037584
CP011834
Betaproteobacteria
Limnohabitans sp. 103DPR2 [CP011834]
2247818
2247745
-
Cys
GCA
[Ensembl]
¡û
>W1610074362
BCWP01000025
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
13029
13102
+
Cys
GCA
[ENA]
¡û
>W1610686295
LKUW01000049
Betaproteobacteria
Paracidovorax citrulli [LKUW]
191648
191721
+
Cys
GCA
[ENA]
¡û
>W1610722346
LMCN01000011
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
140486
140559
+
Cys
GCA
[ENA]
¡û
>W1610752926
LNDZ01000013
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
213583
213656
+
Cys
GCA
[ENA]
¡û
>W1710071480
BCWP01000025
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
13029
13102
+
Cys
GCA
[ENA]
¡û
>W1710087928
BDST01000052
Betaproteobacteria
Aquitalea magnusonii [BDST]
120048
119975
-
Cys
GCA
[ENA]
¡û
>W1710559452
FOMQ01000011
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
141754
141827
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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