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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480282 (32 seq.)
>W1711584875
MNYZ01000099
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
35587
35516
-
Lys
TTT
[ENA]
¡û
>W141067398
ASAK01000005
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
2175271
2175342
+
Lys
TTT
[ENA]
¡û
>W141096714
AVFS01000101
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
37520
37449
-
Lys
TTT
[ENA]
¡û
>W141096757
AVFT01000080
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
19741
19670
-
Lys
TTT
[ENA]
¡û
>W141096766
AVFU01000003
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
3354
3425
+
Lys
TTT
[ENA]
¡û
>W141096806
AVFV01000028
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
1300
1371
+
Lys
TTT
[ENA]
¡û
>W141096874
AVFX01000002
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
41408
41479
+
Lys
TTT
[ENA]
¡û
>W141096920
AVFY01000028
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
125047
124976
-
Lys
TTT
[ENA]
¡û
>W141096975
AVFZ01000168
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
4698
4627
-
Lys
TTT
[ENA]
¡û
>C191000788
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
1320680
1320751
+
Lys
TTT
-
¡û
>W1910175461
BJCD01000017
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A NIES-905 [BJCD]
3479
3550
+
Lys
TTT
[ENA]
¡û
>W1910194215
CZCT02000130
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
263631
263560
-
Lys
TTT
[ENA]
¡û
>W1910613519
LGSU01000758
Cyanobacteriota
Hydrocoleum sp. CS-953 [LGSU]
2184
2256
+
Lys
TTT
[ENA]
¡û
>W1911638273
PVWJ01000012
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
57138
57209
+
Lys
TTT
[ENA]
¡û
>SRA1005333
SRR006907.184196
metagenomic water samples (SRP000427)
90
19
-
Lys
TTT
[SRA]
>W2010088685
BJCD01000017
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A NIES-905 [BJCD]
3479
3550
+
Lys
TTT
[ENA]
¡û
>W2010372539
CZCS02000011
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
44099
44170
+
Lys
TTT
[ENA]
¡û
>W2010372612
CZCT02000130
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
263631
263560
-
Lys
TTT
[ENA]
¡û
>W2010773121
LGSU01000758
Cyanobacteriota
Hydrocoleum sp. CS-953 [LGSU]
2184
2256
+
Lys
TTT
[ENA]
¡û
>W2011229999
PVWJ01000012
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
57138
57209
+
Lys
TTT
[ENA]
¡û
>W2110736373
JAJDMN010000001
Cyanobacteriota
Planktothrix agardhii 1813 [JAJDMN]
391286
391215
-
Lys
TTT
[ENA]
¡û
>W2110736407
JAJDMO010000001
Cyanobacteriota
Planktothrix agardhii 1810 [JAJDMO]
411102
411031
-
Lys
TTT
[ENA]
¡û
>W2110736431
JAJDMP010000001
Cyanobacteriota
Planktothrix agardhii 1809 [JAJDMP]
4356404
4356475
+
Lys
TTT
[ENA]
¡û
>W2110736468
JAJDMQ010000001
Cyanobacteriota
Planktothrix agardhii 1808 [JAJDMQ]
4285557
4285628
+
Lys
TTT
[ENA]
¡û
>W2110736507
JAJDMR010000001
Cyanobacteriota
Planktothrix agardhii 1031 [JAJDMR]
4292777
4292848
+
Lys
TTT
[ENA]
¡û
>W2110736538
JAJDMS010000001
Cyanobacteriota
Planktothrix agardhii 1025 [JAJDMS]
3892292
3892363
+
Lys
TTT
[ENA]
¡û
>C231651692
LR882934
Cyanobacteriota
Planktothrix agardhii NIVA-CYA126/8 [LR882934]
66255
66326
+
Lys
TTT
-
¡û
>C231651735
LR882938
Cyanobacteriota
Planktothrix agardhii No.2A [LR882938]
1470238
1470309
+
Lys
TTT
-
¡û
>C231651799
LR882944
Cyanobacteriota
Planktothrix agardhii No.365 [LR882944]
3121354
3121283
-
Lys
TTT
-
¡û
>C231651841
LR882950
Cyanobacteriota
Planktothrix agardhii PCC7805 [LR882950]
2697802
2697731
-
Lys
TTT
-
¡û
>C231651872
LR882952
Cyanobacteriota
Planktothrix agardhii No.976 [LR882952]
4538546
4538617
+
Lys
TTT
-
¡û
>C231651934
LR882963
Cyanobacteriota
Planktothrix agardhii No.66 [LR882963]
721928
721999
+
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK