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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480373 (22 seq.)
>W1710822166
LKUQ01000019
Actinomycetota
Bifidobacterium longum [LKUQ]
601
528
-
Trp
CCA
[ENA]
¡û
>WENV181216998
OFCH01000019
[OFCH] metagenome; Human gut stool
53694
53623
-
Trp
CCA
[ENA]
¢þ
>WENV181220080
OFCQ01000055
[OFCQ] metagenome; Human gut stool
84915
84844
-
Trp
CCA
[ENA]
¢þ
>WENV181225718
OFDJ01000053
[OFDJ] metagenome; Human gut stool
62653
62582
-
Trp
CCA
[ENA]
¢þ
>C191208466
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1463622
1463693
+
Trp
CCA
-
¡û
>W1910343128
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
38597
38668
+
Trp
CCA
[ENA]
¡û
>W1910343217
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
19362
19291
-
Trp
CCA
[ENA]
¡û
>W1910343431
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
21794
21723
-
Trp
CCA
[ENA]
¡û
>C09102377
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1463827
1463900
+
Trp
CCA
-
¡û
>W1510059594
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
3673
3746
+
Trp
CCA
[ENA]
¡û
>W1510059660
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
3802
3875
+
Trp
CCA
[ENA]
¡û
>W1510059727
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
3124
3197
+
Trp
CCA
[ENA]
¡û
>W1510059794
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
3801
3874
+
Trp
CCA
[ENA]
¡û
>W1510059860
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
38549
38622
+
Trp
CCA
[ENA]
¡û
>W1510059927
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
38577
38650
+
Trp
CCA
[ENA]
¡û
>W1510059994
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
38573
38646
+
Trp
CCA
[ENA]
¡û
>W1510060061
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
38545
38618
+
Trp
CCA
[ENA]
¡û
>C11103156
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1463618
1463691
+
Trp
CCA
-
¡û
>C11103223
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1463618
1463691
+
Trp
CCA
-
¡û
>C161038260
CP011965
Actinomycetota
Bifidobacterium longum subsp. longum CCUG30698 [CP011965]
1191507
1191434
-
Trp
CCA
[Ensembl]
¡û
>W1610518903
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
47556
47483
-
Trp
CCA
[ENA]
¡û
>W1610686225
LKUQ01000019
Actinomycetota
Bifidobacterium longum [LKUQ]
601
528
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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