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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480469 (69 seq.)
>W1710923799
LOCK01000016
Bacillota
Desulfitobacterium hafniense [LOCK]
19777
19850
+
Cys
GCA
[ENA]
¡û
>W131052762
AMZI01000042
Bacillota
Pelosinus sp. HCF1 [AMZI]
16371
16298
-
Cys
GCA
[ENA]
¡û
>W131162751
AQZD01000021
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
63506
63433
-
Cys
GCA
[ENA]
¡û
>W131162811
AQZF01000003
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
19702
19775
+
Cys
GCA
[ENA]
¡û
>W131163742
AQZZ01000003
Bacillota
Succinispira mobilis DSM 6222 [AQZZ]
208648
208575
-
Cys
GCA
[ENA]
¡û
>W131164689
ARAZ01000026
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
60535
60462
-
Cys
GCA
[ENA]
¡û
>W131171181
ARGA01000058
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
45996
45923
-
Cys
GCA
[ENA]
¡û
>W131236395
AUMI01000015
Bacillota
Anaeroarcus burkinensis DSM 6283 [AUMI]
165727
165654
-
Cys
GCA
[ENA]
¡û
>W131251478
CAVN010000055
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
1914
1987
+
Cys
GCA
[ENA]
¡û
>W1711510582
MLBF01000054
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
2538
2611
+
Cys
GCA
[ENA]
¡û
>W1711926242
NADJ01000002
Bacillota
Desulfosporosinus sp. FKB [NADJ]
4863
4936
+
Cys
GCA
[ENA]
¡û
>W1711932727
NAHZ01000006
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
24968
24895
-
Cys
GCA
[ENA]
¡û
>C007776
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
261997
262070
+
Cys
GCA
[Ensembl]
¡û
>w017014
AAQV01000016
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
45237
45167
-
Cys
GCA
[ENA]
¡û
>w002166
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
381725
381655
-
Cys
GCA
[ENA]
¡û
>W141229321
BAMO01000043
Bacillota
Caldalkalibacillus mannanilyticus JCM 10596 [BAMO]
41370
41443
+
Cys
GCA
[ENA]
¡û
>C08000778
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2125280
2125210
-
Cys
GCA
[Ensembl]
¡û
>W141265096
CCEZ01000043
Bacillota
Anaerosalibacter massiliensis ND1 [CCEZ]
526523
526450
-
Cys
GCA
[ENA]
¡û
>W141265104
CCEZ01000074
Bacillota
Anaerosalibacter massiliensis ND1 [CCEZ]
147439
147512
+
Cys
GCA
[ENA]
¡û
>WENV183705248
PDWI01001267
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
37931
37858
-
Cys
GCA
[ENA]
¢þ
>WENV183705850
PDWI01002414
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25
98
+
Cys
GCA
[ENA]
¢þ
>WENV183706099
PDWI01003093
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
23963
23890
-
Cys
GCA
[ENA]
¢þ
>WENV183706847
PDWI01005719
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3386
3459
+
Cys
GCA
[ENA]
¢þ
>WENV183706848
PDWI01005727
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
23
96
+
Cys
GCA
[ENA]
¢þ
>WENV183707762
PDWI01010491
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6702
6629
-
Cys
GCA
[ENA]
¢þ
>WENV183707970
PDWI01011888
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12
85
+
Cys
GCA
[ENA]
¢þ
>WENV183711770
PDWI01079863
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2407
2334
-
Cys
GCA
[ENA]
¢þ
>WENV183711918
PDWI01083801
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
23
96
+
Cys
GCA
[ENA]
¢þ
>WENV183712125
PDWI01089939
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2297
2224
-
Cys
GCA
[ENA]
¢þ
>WENV183712333
PDWI01096278
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2184
2111
-
Cys
GCA
[ENA]
¢þ
>WENV183713203
PDWI01128955
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1694
1621
-
Cys
GCA
[ENA]
¢þ
>WENV183713287
PDWI01132555
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1738
1665
-
Cys
GCA
[ENA]
¢þ
>WENV183713504
PDWI01141139
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1156
1083
-
Cys
GCA
[ENA]
¢þ
>WENV183714954
PDWI01213422
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1254
1181
-
Cys
GCA
[ENA]
¢þ
>WENV183717890
PDWJ01001878
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
45561
45488
-
Cys
GCA
[ENA]
¢þ
>WENV183719659
PDWJ01018014
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4450
4377
-
Cys
GCA
[ENA]
¢þ
>WENV183720793
PDWJ01045491
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
25
98
+
Cys
GCA
[ENA]
¢þ
>WENV183720972
PDWJ01050979
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2049
2122
+
Cys
GCA
[ENA]
¢þ
>WENV183721020
PDWJ01052485
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
563
490
-
Cys
GCA
[ENA]
¢þ
>C191138229
CP035282
Bacillota
Acidilutibacter cellobiosedens JN-28 [CP035282]
1496081
1496154
+
Cys
GCA
-
¡û
>W1910211741
FMIF01000039
Bacillota
Sporanaerobacter sp. PP17-6a [FMIF]
639
712
+
Cys
GCA
[ENA]
¡û
>C09103972
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
196927
197000
+
Cys
GCA
[Ensembl]
¡û
>W1910373608
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
162697
162770
+
Cys
GCA
[ENA]
¡û
>W1910373621
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
1489
1562
+
Cys
GCA
[ENA]
¡û
>W1910496830
FXVB02000047
Bacillota
Bacillota bacterium HV4-6-A5C [FXVB]
10820
10747
-
Cys
GCA
[ENA]
¡û
>C151016305
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
103668
103741
+
Cys
GCA
[Ensembl]
¡û
>C151038537
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1820936
1821009
+
Cys
GCA
[Ensembl]
¡û
>C151074889
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
3068245
3068172
-
Cys
GCA
[Ensembl]
¡û
>C10113562
CP002131
Bacillota
Thermosediminibacter oceani DSM 16646 [CP002131]
1381997
1381924
-
Cys
GCA
[Ensembl]
¡û
>W1511646032
LDZY01000021
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
3830
3903
+
Cys
GCA
[ENA]
¡û
>W11181420
AGJB01000026
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
754
681
-
Cys
GCA
[ENA]
¡û
>C121011412
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
161489
161562
+
Cys
GCA
[Ensembl]
¡û
>C121014862
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
114307
114380
+
Cys
GCA
[Ensembl]
¡û
>W121007257
AFZX01000006
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
4411
4484
+
Cys
GCA
[ENA]
¡û
>W121010361
AGJE01000013
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
83058
82985
-
Cys
GCA
[ENA]
¡û
>W121010478
AGJG01000031
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
42318
42245
-
Cys
GCA
[ENA]
¡û
>W121010532
AGJH01000017
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
58487
58414
-
Cys
GCA
[ENA]
¡û
>W121101526
AKVJ01000029
Bacillota
Pelosinus fermentans B4 [AKVJ]
262939
262866
-
Cys
GCA
[ENA]
¡û
>W121101575
AKVK01000635
Bacillota
Pelosinus fermentans B3 [AKVK]
892
819
-
Cys
GCA
[ENA]
¡û
>W121101646
AKVM01000070
Bacillota
Pelosinus fermentans A11 [AKVM]
262940
262867
-
Cys
GCA
[ENA]
¡û
>W121101714
AKVN01000028
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
172146
172073
-
Cys
GCA
[ENA]
¡û
>W121101776
AKVO01000035
Bacillota
Pelosinus fermentans JBW45 [AKVO]
139521
139448
-
Cys
GCA
[ENA]
¡û
>C131003221
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
113941
114014
+
Cys
GCA
[Ensembl]
¡û
>W1610781400
LOCK01000016
Bacillota
Desulfitobacterium hafniense [LOCK]
19777
19850
+
Cys
GCA
[ENA]
¡û
>W1710506667
FMUS01000003
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
854
927
+
Cys
GCA
[ENA]
¡û
>W1710526321
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
3002906
3002833
-
Cys
GCA
[ENA]
¡û
>W1710568588
FOTS01000025
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
56904
56831
-
Cys
GCA
[ENA]
¡û
>W1710587049
FQXR01000005
Bacillota
Sporanaerobacter acetigenes DSM 13106 [FQXR]
289167
289240
+
Cys
GCA
[ENA]
¡û
>W1710593538
FRDN01000020
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
6411
6484
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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