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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.48052 (107 seq.)
>W1710944173
LOQF01000011
Fusobacteriota
Sneathia sanguinegens [LOQF]
16118
16031
-
Leu
TAA
[ENA]
¡û
>WENV180551471
OCJF01062835
[OCJF] human oral metagenome; human oral
210
123
-
Leu
TAA
[ENA]
¢þ
>WENV180705849
ODEJ01033238
[ODEJ] human metagenome; G_DNA_Tongue dorsum
26
113
+
Leu
TAA
[ENA]
¢þ
>WENV180708258
ODFJ01000715
[ODFJ] human metagenome; G_DNA_Tongue dorsum
4971
4884
-
Leu
TAA
[ENA]
¢þ
>WENV180712396
ODFT01000347
[ODFT] human metagenome; G_DNA_Posterior fornix
5614
5701
+
Leu
TAA
[ENA]
¢þ
>WENV180719558
ODGJ01002674
[ODGJ] human metagenome; G_DNA_Tongue dorsum
5492
5405
-
Leu
TAA
[ENA]
¢þ
>WENV180720457
ODGJ01047883
[ODGJ] human metagenome; G_DNA_Tongue dorsum
264
177
-
Leu
TAA
[ENA]
¢þ
>WENV180724061
ODGR01000046
[ODGR] human metagenome; G_DNA_Tongue dorsum
90246
90333
+
Leu
TAA
[ENA]
¢þ
>WENV180729087
ODGU01189860
[ODGU] human metagenome; G_DNA_Supragingival plaque
202
289
+
Leu
TAA
[ENA]
¢þ
>WENV180739147
ODHD01009157
[ODHD] human metagenome; G_DNA_Supragingival plaque
492
405
-
Leu
TAA
[ENA]
¢þ
>WENV180750586
ODHS01003952
[ODHS] human metagenome; G_DNA_Supragingival plaque
1764
1851
+
Leu
TAA
[ENA]
¢þ
>WENV180757719
ODHW01001455
[ODHW] human metagenome; G_DNA_Tongue dorsum
13251
13338
+
Leu
TAA
[ENA]
¢þ
>WENV180762981
ODIA01000019
[ODIA] human metagenome; G_DNA_Tongue dorsum
107661
107574
-
Leu
TAA
[ENA]
¢þ
>WENV180769458
ODIG01075572
[ODIG] human metagenome; G_DNA_Tongue dorsum
233
146
-
Leu
TAA
[ENA]
¢þ
>WENV180769462
ODIG01076642
[ODIG] human metagenome; G_DNA_Tongue dorsum
233
146
-
Leu
TAA
[ENA]
¢þ
>WENV180769922
ODIG01236529
[ODIG] human metagenome; G_DNA_Tongue dorsum
46
133
+
Leu
TAA
[ENA]
¢þ
>WENV180775703
ODIK01002900
[ODIK] human metagenome; G_DNA_Tongue dorsum
5115
5028
-
Leu
TAA
[ENA]
¢þ
>WENV180778907
ODIN01000016
[ODIN] human metagenome; G_DNA_Throat
89430
89517
+
Leu
TAA
[ENA]
¢þ
>WENV180787409
ODIS01005230
[ODIS] human metagenome; G_DNA_Supragingival plaque
4950
4863
-
Leu
TAA
[ENA]
¢þ
>WENV180790151
ODIT01004357
[ODIT] human metagenome; G_DNA_Tongue dorsum
840
753
-
Leu
TAA
[ENA]
¢þ
>WENV180792482
ODIW01000585
[ODIW] human metagenome; G_DNA_Tongue dorsum
23524
23611
+
Leu
TAA
[ENA]
¢þ
>WENV180804846
ODJG01017420
[ODJG] human metagenome; G_DNA_Supragingival plaque
1467
1554
+
Leu
TAA
[ENA]
¢þ
>WENV180806597
ODJH01082261
[ODJH] human metagenome; G_DNA_Tongue dorsum
75
162
+
Leu
TAA
[ENA]
¢þ
>WENV180806956
ODJI01000196
[ODJI] human metagenome; G_DNA_Tongue dorsum
4974
4887
-
Leu
TAA
[ENA]
¢þ
>WENV180813948
ODJO01004120
[ODJO] human metagenome; G_DNA_Supragingival plaque
2368
2455
+
Leu
TAA
[ENA]
¢þ
>WENV180814051
ODJO01006130
[ODJO] human metagenome; G_DNA_Supragingival plaque
2994
2907
-
Leu
TAA
[ENA]
¢þ
>WENV180832640
ODKC01002867
[ODKC] human metagenome; G_DNA_Supragingival plaque
4526
4613
+
Leu
TAA
[ENA]
¢þ
>WENV180836164
ODKE01053159
[ODKE] human metagenome; G_DNA_Supragingival plaque
321
408
+
Leu
TAA
[ENA]
¢þ
>WENV180844184
ODKN01045896
[ODKN] human metagenome; G_DNA_Supragingival plaque
247
160
-
Leu
TAA
[ENA]
¢þ
>WENV180846407
ODKT01010578
[ODKT] human metagenome; G_DNA_Supragingival plaque
8
95
+
Leu
TAA
[ENA]
¢þ
>WENV180859619
ODLD01001975
[ODLD] human metagenome; G_DNA_Supragingival plaque
4424
4511
+
Leu
TAA
[ENA]
¢þ
>WENV180861523
ODLE01005315
[ODLE] human metagenome; G_DNA_Tongue dorsum
802
715
-
Leu
TAA
[ENA]
¢þ
>WENV180864263
ODLH01020409
[ODLH] human metagenome; G_DNA_Tongue dorsum
558
645
+
Leu
TAA
[ENA]
¢þ
>WENV180866324
ODLJ01012578
[ODLJ] human metagenome; G_DNA_Tongue dorsum
71
158
+
Leu
TAA
[ENA]
¢þ
>WENV180873295
ODLP01003053
[ODLP] human metagenome; G_DNA_Tongue dorsum
4538
4625
+
Leu
TAA
[ENA]
¢þ
>WENV180883161
ODMC01002101
[ODMC] human metagenome; G_DNA_Tongue dorsum
6838
6925
+
Leu
TAA
[ENA]
¢þ
>WENV180888945
ODMN01006971
[ODMN] human metagenome; G_DNA_Supragingival plaque
1995
2082
+
Leu
TAA
[ENA]
¢þ
>WENV180900406
ODOJ01001676
[ODOJ] human metagenome; G_DNA_Tongue dorsum
6363
6450
+
Leu
TAA
[ENA]
¢þ
>WENV180917058
ODTD01003940
[ODTD] human metagenome; G_DNA_Tongue dorsum
681
594
-
Leu
TAA
[ENA]
¢þ
>WENV180919878
ODTH01000369
[ODTH] human metagenome; G_DNA_Tongue dorsum
23104
23191
+
Leu
TAA
[ENA]
¢þ
>WENV180921976
ODTJ01000912
[ODTJ] human metagenome; G_DNA_Supragingival plaque
17758
17845
+
Leu
TAA
[ENA]
¢þ
>WENV180923767
ODTK01000157
[ODTK] human metagenome; G_DNA_Supragingival plaque
51968
52055
+
Leu
TAA
[ENA]
¢þ
>WENV180931512
ODTP01005211
[ODTP] human metagenome; G_DNA_Tongue dorsum
1842
1929
+
Leu
TAA
[ENA]
¢þ
>WENV180939036
ODTX01013283
[ODTX] human metagenome; G_DNA_Supragingival plaque
198
111
-
Leu
TAA
[ENA]
¢þ
>WENV180942836
ODUA01000041
[ODUA] human metagenome; G_DNA_Posterior fornix
14791
14878
+
Leu
TAA
[ENA]
¢þ
>WENV180944387
ODUC01015947
[ODUC] human metagenome; G_DNA_Supragingival plaque
1982
2069
+
Leu
TAA
[ENA]
¢þ
>WENV180949317
ODUG01013451
[ODUG] human metagenome; G_DNA_Tongue dorsum
1869
1956
+
Leu
TAA
[ENA]
¢þ
>WENV180949940
ODUG01056745
[ODUG] human metagenome; G_DNA_Tongue dorsum
152
65
-
Leu
TAA
[ENA]
¢þ
>WENV180955038
ODUJ01026082
[ODUJ] human metagenome; G_DNA_Tongue dorsum
175
88
-
Leu
TAA
[ENA]
¢þ
>WENV180959518
ODUM01001019
[ODUM] human metagenome; G_DNA_Tongue dorsum
11948
12035
+
Leu
TAA
[ENA]
¢þ
>WENV180968703
ODUT01061518
[ODUT] human metagenome; G_DNA_Tongue dorsum
252
165
-
Leu
TAA
[ENA]
¢þ
>WENV180968801
ODUT01080920
[ODUT] human metagenome; G_DNA_Tongue dorsum
180
93
-
Leu
TAA
[ENA]
¢þ
>WENV180976118
ODUY01047681
[ODUY] human metagenome; G_DNA_Supragingival plaque
378
291
-
Leu
TAA
[ENA]
¢þ
>WENV180977742
ODUZ01004110
[ODUZ] human metagenome; G_DNA_Tongue dorsum
812
725
-
Leu
TAA
[ENA]
¢þ
>WENV180981393
ODVE01020085
[ODVE] human metagenome; G_DNA_Supragingival plaque
505
592
+
Leu
TAA
[ENA]
¢þ
>WENV180983556
ODVF01019184
[ODVF] human metagenome; G_DNA_Supragingival plaque
1709
1796
+
Leu
TAA
[ENA]
¢þ
>WENV180985444
ODVJ01005074
[ODVJ] human metagenome; G_DNA_Tongue dorsum
732
645
-
Leu
TAA
[ENA]
¢þ
>WENV180990020
ODVN01000284
[ODVN] human metagenome; G_DNA_Tongue dorsum
4971
4884
-
Leu
TAA
[ENA]
¢þ
>WENV180998785
ODVT01001960
[ODVT] human metagenome; G_DNA_Buccal mucosa
3923
4010
+
Leu
TAA
[ENA]
¢þ
>WENV181003536
ODVX01016881
[ODVX] human metagenome; G_DNA_Supragingival plaque
291
204
-
Leu
TAA
[ENA]
¢þ
>WENV181007782
ODWE01000672
[ODWE] human metagenome; G_DNA_Supragingival plaque
25649
25736
+
Leu
TAA
[ENA]
¢þ
>WENV181010577
ODWH01073126
[ODWH] human metagenome; G_DNA_Buccal mucosa
108
21
-
Leu
TAA
[ENA]
¢þ
>WENV181011516
ODWI01041798
[ODWI] human metagenome; G_DNA_Tongue dorsum
145
232
+
Leu
TAA
[ENA]
¢þ
>WENV181019687
ODWU01009884
[ODWU] human metagenome; G_DNA_Supragingival plaque
169
82
-
Leu
TAA
[ENA]
¢þ
>WENV181030277
ODXF01120132
[ODXF] human metagenome; G_DNA_Supragingival plaque
90
3
-
Leu
TAA
[ENA]
¢þ
>WENV181032412
ODXN01000013
[ODXN] human metagenome; G_DNA_Tongue dorsum
127330
127417
+
Leu
TAA
[ENA]
¢þ
>WENV181038356
ODXQ01001123
[ODXQ] human metagenome; G_DNA_Tongue dorsum
724
811
+
Leu
TAA
[ENA]
¢þ
>WENV181038917
ODXQ01006344
[ODXQ] human metagenome; G_DNA_Tongue dorsum
526
613
+
Leu
TAA
[ENA]
¢þ
>WENV181039845
ODXQ01058184
[ODXQ] human metagenome; G_DNA_Tongue dorsum
260
173
-
Leu
TAA
[ENA]
¢þ
>WENV181040714
ODXS01000563
[ODXS] human metagenome; G_DNA_Tongue dorsum
16145
16232
+
Leu
TAA
[ENA]
¢þ
>WENV181043041
ODXU01032293
[ODXU] human metagenome; G_DNA_Buccal mucosa
396
309
-
Leu
TAA
[ENA]
¢þ
>WENV181044376
ODXV01007701
[ODXV] human metagenome; G_DNA_Tongue dorsum
46
133
+
Leu
TAA
[ENA]
¢þ
>WENV181051997
ODYE01011489
[ODYE] human metagenome; G_DNA_Tongue dorsum
660
747
+
Leu
TAA
[ENA]
¢þ
>WENV181052882
ODYG01067075
[ODYG] human metagenome; G_DNA_Tongue dorsum
116
29
-
Leu
TAA
[ENA]
¢þ
>WENV181057623
ODYL01000520
[ODYL] human metagenome; G_DNA_Tongue dorsum
21704
21791
+
Leu
TAA
[ENA]
¢þ
>WENV181059526
ODYM01002104
[ODYM] human metagenome; G_DNA_Tongue dorsum
4976
4889
-
Leu
TAA
[ENA]
¢þ
>WENV181063980
ODYP01007035
[ODYP] human metagenome; G_DNA_Supragingival plaque
2415
2328
-
Leu
TAA
[ENA]
¢þ
>WENV181066753
ODZI01001459
[ODZI] human metagenome; G_DNA_Supragingival plaque
181
94
-
Leu
TAA
[ENA]
¢þ
>WENV181069039
ODZZ01009111
[ODZZ] human metagenome; G_DNA_Tongue dorsum
1820
1907
+
Leu
TAA
[ENA]
¢þ
>WENV181070814
OEAE01011596
[OEAE] human metagenome; G_DNA_Supragingival plaque
1486
1399
-
Leu
TAA
[ENA]
¢þ
>WENV181076765
OEAP01013284
[OEAP] human metagenome; G_DNA_Supragingival plaque
534
621
+
Leu
TAA
[ENA]
¢þ
>WENV181081674
OEAS01321876
[OEAS] human metagenome; G_DNA_Supragingival plaque
8
95
+
Leu
TAA
[ENA]
¢þ
>WENV181083280
OEAV01004332
[OEAV] human metagenome; G_DNA_Supragingival plaque
1331
1244
-
Leu
TAA
[ENA]
¢þ
>WENV181087170
OEAY01016244
[OEAY] human metagenome; G_DNA_Tongue dorsum
679
592
-
Leu
TAA
[ENA]
¢þ
>WENV181091065
OEBC01010875
[OEBC] human metagenome; G_DNA_Supragingival plaque
2735
2822
+
Leu
TAA
[ENA]
¢þ
>WENV181096842
OECA01000533
[OECA] human metagenome; G_DNA_Tongue dorsum
5089
5002
-
Leu
TAA
[ENA]
¢þ
>WENV181102147
OECT01001042
[OECT] human metagenome; G_DNA_Tongue dorsum
4972
4885
-
Leu
TAA
[ENA]
¢þ
>WENV181107501
OEEI01009677
[OEEI] human metagenome; G_DNA_Supragingival plaque
1805
1718
-
Leu
TAA
[ENA]
¢þ
>WENV181114557
OEEO01001565
[OEEO] human metagenome; G_DNA_Supragingival plaque
4946
5033
+
Leu
TAA
[ENA]
¢þ
>WENV181121593
OEFL01009665
[OEFL] human metagenome; G_DNA_Supragingival plaque
119
32
-
Leu
TAA
[ENA]
¢þ
>WENV181124290
OEFQ01054199
[OEFQ] human metagenome; G_DNA_Supragingival plaque
47
134
+
Leu
TAA
[ENA]
¢þ
>WENV181138894
OEGN01001355
[OEGN] human metagenome; G_DNA_Tongue dorsum
110
23
-
Leu
TAA
[ENA]
¢þ
>WENV181139477
OEGN01011005
[OEGN] human metagenome; G_DNA_Tongue dorsum
2682
2595
-
Leu
TAA
[ENA]
¢þ
>WENV181140057
OEGN01053344
[OEGN] human metagenome; G_DNA_Tongue dorsum
152
65
-
Leu
TAA
[ENA]
¢þ
>WENV181141259
OEGT01002347
[OEGT] human metagenome; G_DNA_Throat
5459
5546
+
Leu
TAA
[ENA]
¢þ
>WENV181145773
OEHQ01000060
[OEHQ] human metagenome; G_DNA_Supragingival plaque
73287
73374
+
Leu
TAA
[ENA]
¢þ
>WENV181150471
OEHW01002911
[OEHW] human metagenome; G_DNA_Tongue dorsum
3946
4033
+
Leu
TAA
[ENA]
¢þ
>WENV181179948
OEJT01034506
[OEJT] human metagenome; G_DNA_Supragingival plaque
121
34
-
Leu
TAA
[ENA]
¢þ
>WENV181182439
OEJV01010146
[OEJV] human metagenome; G_DNA_Supragingival plaque
666
579
-
Leu
TAA
[ENA]
¢þ
>W141146559
AWVR01000058
Fusobacteriota
Leptotrichia sp. oral taxon 215 oral taxon 215 str. W9775 [AWVR]
4845
4758
-
Leu
TAA
[ENA]
¡û
>WENV183720438
PDWJ01034420
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1843
1930
+
Leu
TAA
[ENA]
¢þ
>C181020479
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
713789
713876
+
Leu
TAA
-
¡û
>C181020495
CP016753
Fusobacteriota
Leptotrichia sp. oral taxon 498 F0590 [CP016753]
902796
902883
+
Leu
TAA
-
¡û
>C151079068
CP011280
Fusobacteriota
Sneathia vaginalis SN35 [CP011280]
7105
7192
+
Leu
TAA
[Ensembl]
¡û
>C151094803
CP012410
Fusobacteriota
Leptotrichia sp. oral taxon 212 W10393 [CP012410]
2000596
2000509
-
Leu
TAA
-
¡û
>C161069103
CP014231
Fusobacteriota
Leptotrichia sp. oral taxon 847 F0260 [CP014231]
929518
929431
-
Leu
TAA
[Ensembl]
¡û
>W1610800473
LOQF01000011
Fusobacteriota
Sneathia sanguinegens [LOQF]
16118
16031
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK