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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480622 (46 seq.)
>W1711377918
MDZH01000396
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
278
206
-
Met
CAT
[ENA]
¡û
>W1711603022
MOLN01000022
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
402
330
-
Met
CAT
[ENA]
¡û
>W1711772040
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
815578
815650
+
Met
CAT
[ENA]
¡û
>W131063365
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1012802
1012730
-
Met
CAT
[ENA]
¡û
>W131087157
AOCI01000004
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
89064
88992
-
Met
CAT
[ENA]
¡û
>W131203773
ASZQ01000239
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
31177
31249
+
Met
CAT
[ENA]
¡û
>C171112053
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
756144
756216
+
Met
CAT
-
¡û
>WENV180110679
OAPN01003466
[OAPN] marine metagenome; 2011
179
107
-
Ile2
CAT
[ENA]
¢þ
>WENV180275098
OBHS01006037
[OBHS] metagenome; freshwater sediment
176
248
+
Ile2
CAT
[ENA]
¢þ
>W141065561
AQPY01000370
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
4229
4301
+
Met
CAT
[ENA]
¡û
>W08008946
ABLR01000011
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
197789
197717
-
Met
CAT
[ENA]
¡û
>W08011506
ABVI01000010
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
202386
202314
-
Met
CAT
[ENA]
¡û
>W141242359
CAIH01000043
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
322
250
-
Met
CAT
[ENA]
¡û
>W141242414
CAII01000431
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
4250
4322
+
Met
CAT
[ENA]
¡û
>W141242453
CAIJ01000314
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
532
604
+
Met
CAT
[ENA]
¡û
>W141242478
CAIK01000060
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
4226
4298
+
Met
CAT
[ENA]
¡û
>W141242521
CAIL01000065
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
6418
6490
+
Met
CAT
[ENA]
¡û
>W141242571
CAIM01000450
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
2437
2365
-
Met
CAT
[ENA]
¡û
>W141242591
CAIN01000059
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
291
219
-
Met
CAT
[ENA]
¡û
>W141242656
CAIO01000422
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
4972
4900
-
Met
CAT
[ENA]
¡û
>W141242691
CAIP01000227
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
4325
4397
+
Met
CAT
[ENA]
¡û
>W141242718
CAIQ01000166
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
15778
15850
+
Met
CAT
[ENA]
¡û
>C08006380
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
1346305
1346233
-
Met
CAT
[Ensembl]
¡û
>WENV170680642
LFEF01006723
[LFEF] freshwater metagenome; waterbloom
5458
5530
+
Met
CAT
[ENA]
¢þ
>C181046170
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
3373271
3373343
+
Met
CAT
-
¡û
>C191007267
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
5175939
5175867
-
Met
CAT
-
¡û
>W1910020355
BDSG01000053
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
16477
16549
+
Met
CAT
[ENA]
¡û
>W1910020393
BDSM01000024
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
96805
96733
-
Met
CAT
[ENA]
¡û
>W1910038678
BEIU01000030
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
8196
8124
-
Met
CAT
[ENA]
¡û
>W1910038708
BEIV01000050
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
29123
29051
-
Met
CAT
[ENA]
¡û
>W1910067346
BEYQ01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
234682
234610
-
Met
CAT
[ENA]
¡û
>W1910067398
BFAC01000004
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
276885
276813
-
Met
CAT
[ENA]
¡û
>W1910142350
BIFY01000173
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
5402
5474
+
Met
CAT
[ENA]
¡û
>W1910665584
MCIH01000205
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
603
531
-
Met
CAT
[ENA]
¡û
>W1910768675
MOLZ01000077
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
6090
6018
-
Met
CAT
[ENA]
¡û
>C09103647
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
1274576
1274504
-
Met
CAT
[Ensembl]
¡û
>C151080696
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
3506586
3506658
+
Met
CAT
-
¡û
>W1510013642
BBPA01000070
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
189279
189351
+
Met
CAT
[ENA]
¡û
>C10104739
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
1275438
1275366
-
Met
CAT
[Ensembl]
¡û
>C131010316
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
6095794
6095722
-
Met
CAT
[Ensembl]
¡û
>W1610550815
JXYX01000002
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
365998
365926
-
Met
CAT
[ENA]
¡û
>W1710004726
AJHB01000421
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
118
46
-
Met
CAT
[ENA]
¡û
>W1710005074
AJUS01000461
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
118
46
-
Met
CAT
[ENA]
¡û
>W1710005110
AJUT01000425
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
118
46
-
Met
CAT
[ENA]
¡û
>W1710005147
AJUU01000425
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
120
48
-
Met
CAT
[ENA]
¡û
>W1710660692
JXYX01000002
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
365998
365926
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK