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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480754 (51 seq.)
>W1710879723
LMRV01000078
Bacillota
Paenibacillus sp. Soil522 [LMRV]
3087
3160
+
Gly
TCC
[ENA]
¡û
>W1711220506
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
5190682
5190609
-
Gly
TCC
[ENA]
¡û
>W1711220514
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
4038242
4038172
-
Gly
TCC
[ENA]
¡û
>W1711220547
LXQN01000021
Bacillota
Paenibacillus sp. AD87 [LXQN]
75139
75212
+
Gly
TCC
[ENA]
¡û
>W1711220564
LXQN01000022
Bacillota
Paenibacillus sp. AD87 [LXQN]
654132
654062
-
Gly
TCC
[ENA]
¡û
>W1711220581
LXQN01000022
Bacillota
Paenibacillus sp. AD87 [LXQN]
613695
613622
-
Gly
TCC
[ENA]
¡û
>W131227924
AUFO01000008
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
117658
117588
-
Gly
TCC
[ENA]
¡û
>W131234911
AULE01000001
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
124056
123983
-
Gly
TCC
[ENA]
¡û
>W131235732
AULU01000030
Bacillota
Paenibacillus assamensis DSM 18201 [AULU]
25479
25406
-
Gly
TCC
[ENA]
¡û
>W131235736
AULU01000030
Bacillota
Paenibacillus assamensis DSM 18201 [AULU]
25116
25043
-
Gly
TCC
[ENA]
¡û
>W131235898
AULX01000006
Bacillota
Paenibacillus pinihumi DSM 23905 [AULX]
535680
535607
-
Gly
TCC
[ENA]
¡û
>W141072460
ASPU01000012
Bacillota
Paenibacillus sp. FSL H7-689 [ASPU]
29804
29734
-
Gly
TCC
[ENA]
¡û
>W141072466
ASPU01000015
Bacillota
Paenibacillus sp. FSL H7-689 [ASPU]
519396
519326
-
Gly
TCC
[ENA]
¡û
>W141072484
ASPU01000034
Bacillota
Paenibacillus sp. FSL H7-689 [ASPU]
28412
28342
-
Gly
TCC
[ENA]
¡û
>W141072523
ASPU01000065
Bacillota
Paenibacillus sp. FSL H7-689 [ASPU]
880
950
+
Gly
TCC
[ENA]
¡û
>W141145230
AWUK01000001
Bacillota
Paenibacillus sp. MAEPY2 [AWUK]
197410
197480
+
Gly
TCC
[ENA]
¡û
>W141145249
AWUK01000021
Bacillota
Paenibacillus sp. MAEPY2 [AWUK]
221341
221268
-
Gly
TCC
[ENA]
¡û
>W141145266
AWUK01000030
Bacillota
Paenibacillus sp. MAEPY2 [AWUK]
320695
320625
-
Gly
TCC
[ENA]
¡û
>W141145279
AWUK01000046
Bacillota
Paenibacillus sp. MAEPY2 [AWUK]
200
270
+
Gly
TCC
[ENA]
¡û
>WENV183734892
PJUA01000100
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
279
352
+
Gly
TCC
[ENA]
¢þ
>C181021405
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
2799083
2799153
+
Gly
TCC
-
¡û
>C191125266
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
198147
198074
-
Gly
TCC
-
¡û
>W1910154670
BILY01000006
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
6
79
+
Gly
TCC
[ENA]
¡û
>W1910755724
MKZL01000014
Bacillota
Paenibacillus sp. GM1FR GM1FR [MKZL]
1740
1810
+
Gly
TCC
[ENA]
¡û
>W1910755736
MKZL01000030
Bacillota
Paenibacillus sp. GM1FR GM1FR [MKZL]
32712
32642
-
Gly
TCC
[ENA]
¡û
>W1910755754
MKZL01000059
Bacillota
Paenibacillus sp. GM1FR GM1FR [MKZL]
190765
190695
-
Gly
TCC
[ENA]
¡û
>W1910755782
MKZL01000066
Bacillota
Paenibacillus sp. GM1FR GM1FR [MKZL]
271855
271785
-
Gly
TCC
[ENA]
¡û
>W1911779765
QXQB01000003
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
862717
862644
-
Gly
TCC
[ENA]
¡û
>W1810628968
QICW01000001
Bacillota
Paenibacillus taichungensis DB-4 [QICW]
993792
993862
+
Gly
TCC
[ENA]
¡û
>W1810628992
QICW01000005
Bacillota
Paenibacillus taichungensis DB-4 [QICW]
474054
473984
-
Gly
TCC
[ENA]
¡û
>W1810629005
QICW01000012
Bacillota
Paenibacillus taichungensis DB-4 [QICW]
1141
1211
+
Gly
TCC
[ENA]
¡û
>W1810629042
QICW01000023
Bacillota
Paenibacillus taichungensis DB-4 [QICW]
539
609
+
Gly
TCC
[ENA]
¡û
>W1810759043
QPJD01000006
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
3945
4018
+
Gly
TCC
[ENA]
¡û
>C151047795
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
819128
819201
+
Gly
TCC
[Ensembl]
¡û
>C151047801
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
1446959
1447029
+
Gly
TCC
[Ensembl]
¡û
>C151047822
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
6575035
6574962
-
Gly
TCC
[Ensembl]
¡û
>SRA1034595
SRR035089.131086
454 Sequencing (SRP001810)
207
134
-
Gly
TCC
[SRA]
>W1511577205
LAQO01000030
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
99197
99127
-
Gly
TCC
[ENA]
¡û
>W1610062351
BCNM01000002
Bacillota
Paenibacillus pabuli NBRC 13638 [BCNM]
152281
152211
-
Gly
TCC
[ENA]
¡û
>W1610742069
LMRV01000078
Bacillota
Paenibacillus sp. Soil522 [LMRV]
3087
3160
+
Gly
TCC
[ENA]
¡û
>W1611005024
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
5190682
5190609
-
Gly
TCC
[ENA]
¡û
>W1611005032
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
4038242
4038172
-
Gly
TCC
[ENA]
¡û
>W1611005065
LXQN01000021
Bacillota
Paenibacillus sp. AD87 [LXQN]
75139
75212
+
Gly
TCC
[ENA]
¡û
>W1611005082
LXQN01000022
Bacillota
Paenibacillus sp. AD87 [LXQN]
654132
654062
-
Gly
TCC
[ENA]
¡û
>W1611005099
LXQN01000022
Bacillota
Paenibacillus sp. AD87 [LXQN]
613695
613622
-
Gly
TCC
[ENA]
¡û
>W1710059892
BCNM01000002
Bacillota
Paenibacillus pabuli NBRC 13638 [BCNM]
152281
152211
-
Gly
TCC
[ENA]
¡û
>W1710544925
FOBD01000011
Bacillota
Paenibacillus sp. OK003 [FOBD]
220734
220661
-
Gly
TCC
[ENA]
¡û
>W1710544929
FOBD01000015
Bacillota
Paenibacillus sp. OK003 [FOBD]
107349
107279
-
Gly
TCC
[ENA]
¡û
>W1710544948
FOBD01000023
Bacillota
Paenibacillus sp. OK003 [FOBD]
1544
1617
+
Gly
TCC
[ENA]
¡û
>W1710544985
FOBD01000034
Bacillota
Paenibacillus sp. OK003 [FOBD]
32713
32643
-
Gly
TCC
[ENA]
¡û
>W1710560635
FONN01000019
Bacillota
Paenibacillus algorifonticola [FONN]
5961
6031
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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