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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480878 (121 seq.)
>W131164910
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
92763
92690
-
Cys
GCA
[ENA]
¡û
>W1711129173
LUTU01000004
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
299698
299771
+
Cys
GCA
[ENA]
¡û
>W1711143203
LVHE01000007
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
46196
46123
-
Cys
GCA
[ENA]
¡û
>W131176048
ARJS01000046
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
38807
38734
-
Cys
GCA
[ENA]
¡û
>W131240789
BAON01000003
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
158878
158805
-
Cys
GCA
[ENA]
¡û
>W131241380
BARL01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
855075
855002
-
Cys
GCA
[ENA]
¡û
>W1711503698
MKTV01000056
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
102391
102318
-
Cys
GCA
[ENA]
¡û
>C171032905
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
1575277
1575204
-
Cys
GCA
-
¡û
>C171032929
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
1126453
1126526
+
Cys
GCA
-
¡û
>C171032973
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
428711
428784
+
Cys
GCA
-
¡û
>C171033068
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
1543875
1543802
-
Cys
GCA
-
¡û
>C171033129
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
471532
471459
-
Cys
GCA
-
¡û
>C171033136
CP014692
Alphaproteobacteria
Acetobacter aceti TMW2.1153 [CP014692]
1456368
1456441
+
Cys
GCA
-
¡û
>C010058
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
2683429
2683356
-
Cys
GCA
[Ensembl]
¡û
>W141195273
AYTY01000147
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
216888
216961
+
Cys
GCA
[ENA]
¡û
>W141224546
BAIN01000001
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
152073
152146
+
Cys
GCA
[ENA]
¡û
>W141226057
BAJT01000003
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
103340
103267
-
Cys
GCA
[ENA]
¡û
>W141226095
BAJU01000001
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
244886
244959
+
Cys
GCA
[ENA]
¡û
>W141226168
BAJV01000011
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
11672
11599
-
Cys
GCA
[ENA]
¡û
>W141226201
BAJW01000022
Alphaproteobacteria
Acetobacter persici JCM 25330 [BAJW]
15988
15915
-
Cys
GCA
[ENA]
¡û
>W141227246
BAKW01000003
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
76054
76127
+
Cys
GCA
[ENA]
¡û
>W141229576
BAND01000038
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
87985
88058
+
Cys
GCA
[ENA]
¡û
>W141229919
BASM01000001
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
13575
13502
-
Cys
GCA
[ENA]
¡û
>WENV170669651
LAHS01001075
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
1252
1325
+
Cys
GCA
[ENA]
¢þ
>C181221206
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
2685881
2685808
-
Cys
GCA
-
¡û
>C191002671
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
301775
301848
+
Cys
GCA
-
¡û
>W141561205
JHYG01000007
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
2641
2568
-
Cys
GCA
[ENA]
¡û
>W141726097
JNAB01000023
Alphaproteobacteria
Kozakia baliensis [JNAB]
186045
186118
+
Cys
GCA
[ENA]
¡û
>W1910006554
BAGS01000062
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
19959
19886
-
Cys
GCA
[ENA]
¡û
>W1910181392
BJLY01000002
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
459086
459013
-
Cys
GCA
[ENA]
¡û
>W1910181781
BJMI01000008
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
14606
14533
-
Cys
GCA
[ENA]
¡û
>W1910181865
BJMK01000004
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
41065
40992
-
Cys
GCA
[ENA]
¡û
>W1910182309
BJMU01000001
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
51757
51830
+
Cys
GCA
[ENA]
¡û
>W1910182352
BJMV01000001
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
468116
468189
+
Cys
GCA
[ENA]
¡û
>W1910183161
BJNM01000003
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
41549
41476
-
Cys
GCA
[ENA]
¡û
>W1910871840
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
11034
10961
-
Cys
GCA
[ENA]
¡û
>W1910872352
NDFO01000013
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
31991
32064
+
Cys
GCA
[ENA]
¡û
>W1910872397
NDFP01000012
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
31991
32064
+
Cys
GCA
[ENA]
¡û
>W1911138383
NOXG01000002
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
360252
360325
+
Cys
GCA
[ENA]
¡û
>W1911410415
NWTP01000001
Alphaproteobacteria
Acetobacter orleanensis CCM 3610 [NWTP]
52037
52110
+
Cys
GCA
[ENA]
¡û
>W1810000582
BEWK01000060
Alphaproteobacteria
Acetobacter aceti NBRC 3281 [BEWK]
7116
7189
+
Cys
GCA
[ENA]
¡û
>W1810000610
BEWL01000006
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
100
173
+
Cys
GCA
[ENA]
¡û
>W1810000664
BEWM01000003
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
299946
300019
+
Cys
GCA
[ENA]
¡û
>W1810000716
BEWN01000004
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
274343
274416
+
Cys
GCA
[ENA]
¡û
>W1810000766
BEWO01000019
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
36035
35962
-
Cys
GCA
[ENA]
¡û
>W1810000805
BEWP01000005
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
6665
6592
-
Cys
GCA
[ENA]
¡û
>W1810053971
PDEU01000001
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
472225
472298
+
Cys
GCA
[ENA]
¡û
>W1810763159
QQAW01000009
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
14701
14628
-
Cys
GCA
[ENA]
¡û
>C151006196
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
2863641
2863568
-
Cys
GCA
[Ensembl]
¡û
>W1511620460
LCTG01000004
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
569603
569676
+
Cys
GCA
[ENA]
¡û
>W11184444
BABW01000012
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
6341
6414
+
Cys
GCA
[ENA]
¡û
>C161096029
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
2931063
2930990
-
Cys
GCA
-
¡û
>C161105564
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1671947
1672020
+
Cys
GCA
[Ensembl]
¡û
>W121016325
AGQV01000002
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
189385
189312
-
Cys
GCA
[ENA]
¡û
>W121034277
AHKI01000052
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
75848
75921
+
Cys
GCA
[ENA]
¡û
>W121123407
BADZ01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
151918
151991
+
Cys
GCA
[ENA]
¡û
>W1610040654
BALE01000009
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
230871
230798
-
Cys
GCA
[ENA]
¡û
>W1610040688
BAMU01000002
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
267329
267402
+
Cys
GCA
[ENA]
¡û
>W1610040764
BAMV01000018
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
21815
21742
-
Cys
GCA
[ENA]
¡û
>W1610040803
BAMW01000045
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
203210
203283
+
Cys
GCA
[ENA]
¡û
>W1610040832
BAMX01000012
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
5879
5952
+
Cys
GCA
[ENA]
¡û
>W1610040881
BAMY01000021
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
164902
164829
-
Cys
GCA
[ENA]
¡û
>W1610040921
BAMZ01000016
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
51552
51479
-
Cys
GCA
[ENA]
¡û
>W1610041163
BANG01000004
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
35393
35466
+
Cys
GCA
[ENA]
¡û
>W1610041236
BANH01000069
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
13531
13458
-
Cys
GCA
[ENA]
¡û
>C131009961
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
2552844
2552917
+
Cys
GCA
[Ensembl]
¡û
>W1610624051
LHZB01000121
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
195512
195439
-
Cys
GCA
[ENA]
¡û
>W1610624133
LHZD01000017
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
150238
150311
+
Cys
GCA
[ENA]
¡û
>W1610624196
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
240733
240806
+
Cys
GCA
[ENA]
¡û
>W1610624287
LHZG01000180
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
16137
16064
-
Cys
GCA
[ENA]
¡û
>W1610624307
LHZH01000116
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
9556
9483
-
Cys
GCA
[ENA]
¡û
>W1610624343
LHZI01001282
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
1202
1275
+
Cys
GCA
[ENA]
¡û
>W1610624421
LHZJ01000084
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
150089
150016
-
Cys
GCA
[ENA]
¡û
>W1610624435
LHZK01000106
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
5687
5760
+
Cys
GCA
[ENA]
¡û
>W1610624503
LHZL01000162
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
19505
19578
+
Cys
GCA
[ENA]
¡û
>W1610624525
LHZM01000073
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
35384
35457
+
Cys
GCA
[ENA]
¡û
>W1610624575
LHZN01000117
Alphaproteobacteria
Gluconobacter albidus [LHZN]
141
214
+
Cys
GCA
[ENA]
¡û
>W1610624655
LHZO01000064
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
96229
96156
-
Cys
GCA
[ENA]
¡û
>W1610624685
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
274373
274446
+
Cys
GCA
[ENA]
¡û
>W1610624783
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
6212
6139
-
Cys
GCA
[ENA]
¡û
>W1610624797
LHZS01000083
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
35414
35487
+
Cys
GCA
[ENA]
¡û
>W1610624949
LHZV01000061
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
74149
74076
-
Cys
GCA
[ENA]
¡û
>W1610624993
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
245315
245388
+
Cys
GCA
[ENA]
¡û
>W1610940246
LUTU01000004
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
299698
299771
+
Cys
GCA
[ENA]
¡û
>W1610954211
LVHE01000007
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
46196
46123
-
Cys
GCA
[ENA]
¡û
>W1710037852
BALE01000009
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
230871
230798
-
Cys
GCA
[ENA]
¡û
>W1710037886
BAMU01000002
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
267329
267402
+
Cys
GCA
[ENA]
¡û
>W1710037962
BAMV01000018
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
21815
21742
-
Cys
GCA
[ENA]
¡û
>W1710038001
BAMW01000045
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
203210
203283
+
Cys
GCA
[ENA]
¡û
>W1710038030
BAMX01000012
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
5879
5952
+
Cys
GCA
[ENA]
¡û
>W1710038079
BAMY01000021
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
164902
164829
-
Cys
GCA
[ENA]
¡û
>W1710038119
BAMZ01000016
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
51552
51479
-
Cys
GCA
[ENA]
¡û
>W1710038361
BANG01000004
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
35393
35466
+
Cys
GCA
[ENA]
¡û
>W1710038434
BANH01000069
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
13531
13458
-
Cys
GCA
[ENA]
¡û
>W1710624333
JOMO01000011
Alphaproteobacteria
Acetobacter orientalis [JOMO]
195346
195419
+
Cys
GCA
[ENA]
¡û
>W1710624389
JOMP01000011
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
579943
580016
+
Cys
GCA
[ENA]
¡û
>W1710624414
JOMQ01000005
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
76170
76243
+
Cys
GCA
[ENA]
¡û
>W1710624453
JOOY01000005
Alphaproteobacteria
Acetobacter orientalis [JOOY]
67165
67238
+
Cys
GCA
[ENA]
¡û
>W1710624555
JOPA01000016
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
23549
23476
-
Cys
GCA
[ENA]
¡û
>W1710624627
JOPC01000016
Alphaproteobacteria
Acetobacter persici [JOPC]
29349
29422
+
Cys
GCA
[ENA]
¡û
>W1710624679
JOPD01000007
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
217581
217654
+
Cys
GCA
[ENA]
¡û
>W1710624719
JOPF01000004
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
168665
168592
-
Cys
GCA
[ENA]
¡û
>W1710624878
JOPJ01000006
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
450254
450327
+
Cys
GCA
[ENA]
¡û
>W1710624908
JOPK01000003
Alphaproteobacteria
Acetobacter orientalis [JOPK]
23766
23693
-
Cys
GCA
[ENA]
¡û
>W1710755169
LHZB01000121
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
195512
195439
-
Cys
GCA
[ENA]
¡û
>W1710755251
LHZD01000017
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
150238
150311
+
Cys
GCA
[ENA]
¡û
>W1710755314
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
240733
240806
+
Cys
GCA
[ENA]
¡û
>W1710755405
LHZG01000180
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
16137
16064
-
Cys
GCA
[ENA]
¡û
>W1710755425
LHZH01000116
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
9556
9483
-
Cys
GCA
[ENA]
¡û
>W1710755461
LHZI01001282
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
1202
1275
+
Cys
GCA
[ENA]
¡û
>W1710755539
LHZJ01000084
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
150089
150016
-
Cys
GCA
[ENA]
¡û
>W1710755553
LHZK01000106
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
5687
5760
+
Cys
GCA
[ENA]
¡û
>W1710755621
LHZL01000162
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
19505
19578
+
Cys
GCA
[ENA]
¡û
>W1710755643
LHZM01000073
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
35384
35457
+
Cys
GCA
[ENA]
¡û
>W1710755693
LHZN01000117
Alphaproteobacteria
Gluconobacter albidus [LHZN]
141
214
+
Cys
GCA
[ENA]
¡û
>W1710755773
LHZO01000064
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
96229
96156
-
Cys
GCA
[ENA]
¡û
>W1710755803
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
274373
274446
+
Cys
GCA
[ENA]
¡û
>W1710755901
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
6212
6139
-
Cys
GCA
[ENA]
¡û
>W1710755915
LHZS01000083
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
35414
35487
+
Cys
GCA
[ENA]
¡û
>W1710756067
LHZV01000061
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
74149
74076
-
Cys
GCA
[ENA]
¡û
>W1710756111
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
245315
245388
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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